Rorug02G0123700

Peptidyl-prolyl cis-trans isomerase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0002978
Physical Location & Seq
Reverse (-)
10634969 .. 10641385
6417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0123700.1

Sequence Viewer

Length: 1545 bp
ATGAGGCAAGCTTTACTTGGATTCTCTGTGATTGTGTTTGTTGAACTAAGCTCTGCAACTGTGGTTTACAAACCGTTGTCTATGGCCTTCGCTGACCTTCCTGCCAAGTTTGCTGTTGGTGTTGATAGAGCTGGTGCTTGTGGGGCTTTGGTAAACGCAGACCCTTTGAATGCATGTTCGCCTCTACGGAATGGGCGCCGATCAAATGAAACTGATAGAGCAAGGTTTGCTTTGATAGTTAGAGGGGAATGTGCTTTCAAGGATAAAGTACGGAATGCTCAAAATGCTGGTTTTGGTGCCGCGATTGTTTATGATGATAGAGATGGAGAAGATTTAGTTTACATGATGATAAACCGTGAGAATACTACAATTCATGCCGTGTTTGTTTCAAAAGCAACAGGTGAACTACTGAAGGAGCATGCTCATGATGAAGAAGGGGAATGCTGTATCTTTCCATTTCAAACTGAAACAGCCTGGACTGTGCTAGCTATATCTTTTATCTCATTCATTGTCATATTGGGTATATTATTAATAGCCATATTTGCTCCAAGACACTGGCTGTACTCACAAGGAAGAAATCAACTTCCTAAAAGTGTGGATAGGAAGGTGGTGGAAGCTCTACCTTGCTTCACATTCAGTTCCGCTCGTTTGGGTGAATGCCACAGTGAAGAAACTTGTGCCATCTGCCTTGAGAATTACAAAGATGGGGAAATTCTTAAAGTTCTTCCCTGTCAACACGAATTTCATTCAAGCTGTGTGGACTCATGGCTGACAAAATGGGGGACATGCTGCCCCGTGTGCAAGCATGATATGAGAACAAAATCTGTGAATCCTGAGATCCACATTTTGGACCATTCAACATATAATTGTGGGGTTAAAGAACTTCTGCCTAATATGAGTCTAGTTGCTGCATTGAGTGCGAGAAGACAACGACCAATAAAGAATTTGGTGTGGCAGATATGGTCGATGTCTCGACCTAACTATGGAGTTCCTATGCACATTCGAGGTTTGATTGGCATTTCAAAAAGCAATGGGATATGCTCAATGAGCTCCGGGAATGAGGTTGTGACTATTGATGTTCAAGAAGCTAAGGATCTGATCAAGTCTGGCTATGGCTATATGGATGTTAGGACTGTGGAGGAGTTCAAGAGAGGGTATGTGGATGCAGAGAAGATTTACAATATTCCTTACATGTTCAATACACCTGAAGGTAGAGTGAAAAATCCTGATTTCTTGAAAGAGGTTGCATCTGCTTGCAGCAAAGAAGATCATATTGTTGTGGGTTGTCAAAGTGGGGTTAGATCCCTATATGCAGTTGCTGATCTTCAAAATGTTGGTTACAAGCATCTGAGCAACATGGGAGGAGGTTATTTGGCTTGGACAGAGAAACATTTTCCTGTTGTTAAGCCAGAAGATGTAGATCAGAAAAAGCCAGAAATTGTTGAGCTAAAAAAGCCAGAAGATGATGAGCAGAAAAAGCCAGAACTTGTTGAGCCAAAAAAGCCAGAAGATGTTGAGCAGAAAAAGCCAGAAGCTGAGCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04217 ko04218 map04217 map04218
Pfam Domains
Protein Families
Pro_isomerase TPR_1 TPR_2

Protein Analysis

514

Amino Acids

57.43

Weight (kDa)

6.2

Isoelectric Point (pI)

42.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PA PF02225 48 - 137 7.8e-14 PA domain
zf-RING_2 PF13639 225 - 268 2.7e-11 Ring finger domain
zf-RING_11 PF17123 226 - 253 3.2e-09 RING-like zinc finger
zf-C3HC4 PF00097 226 - 267 1.4e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4_2 PF13923 226 - 267 1.5e-07 Zinc finger, C3HC4 type (RING finger)
Rhodanese PF00581 360 - 462 6.8e-10 Rhodanese-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 195, 296
AccB7I CCANNNNNTGG 1 cut(s) 847
AccBSI CCGCTC 1 cut(s) 644
AccII CGCG 1 cut(s) 302
AciI CCGC 2 cut(s) 300, 642
AclWI GGATC 3 cut(s) 832, 1101, 1296
AcsI RAATTY 3 cut(s) 711, 740, 943
AcuI CTGAAG 2 cut(s) 431, 1227
AcyI GRCGYC 1 cut(s) 196
AfaI GTAC 2 cut(s) 270, 563
AfiI CCNNNNNNNGG 2 cut(s) 847, 983
AflIII ACRYGT 1 cut(s) 1191
AjnI CCWGG 1 cut(s) 473
Alw21I GWGCWC 2 cut(s) 1052, 1542
Alw26I GTCTC 1 cut(s) 975
AlwI GGATC 3 cut(s) 832, 1101, 1296
AlwNI CAGNNNCTG 2 cut(s) 1319, 1535
AoxI GGCC 1 cut(s) 84
ApeKI GCWGC 3 cut(s) 789, 908, 1257
ApoI RAATTY 3 cut(s) 711, 740, 943
AseI ATTAAT 1 cut(s) 530
AspLEI GCGC 1 cut(s) 198
AspS9I GGNCC 1 cut(s) 850
AsuC2I CCSGG 1 cut(s) 1054
AsuHPI GGTGA 2 cut(s) 413, 665
AsuNHI GCTAGC 1 cut(s) 484
AvaII GGWCC 1 cut(s) 850
BanI GGYRCC 2 cut(s) 195, 296
BanII GRGCYC 2 cut(s) 1052, 1542
BbsI GAAGAC 1 cut(s) 931
Bbv12I GWGCWC 2 cut(s) 1052, 1542
BbvI GCAGC 3 cut(s) 776, 895, 1269
BccI CCATC 3 cut(s) 317, 689, 698
BceAI ACGGC 1 cut(s) 362
BciT130I CCWGG 1 cut(s) 475
BclI TGATCA 1 cut(s) 1098
BcnI CCSGG 1 cut(s) 1054
BcoDI GTCTC 1 cut(s) 975
BfaI CTAG 3 cut(s) 485, 902, 1543
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 4 cut(s) 300, 790, 909, 1258
BlpI GCTNAGC 1 cut(s) 1536
BlsI GCNGC 4 cut(s) 301, 791, 910, 1259
Bme1390I CCNGG 2 cut(s) 475, 1054
Bme18I GGWCC 1 cut(s) 850
BmgT120I GGNCC 1 cut(s) 850
BmiI GGNNCC 2 cut(s) 197, 298
BmrFI CCNGG 2 cut(s) 475, 1054
BmsI GCATC 3 cut(s) 1153, 1256, 1354
BmtI GCTAGC 1 cut(s) 488
BpiI GAAGAC 1 cut(s) 931
Bpu10I CCTNAGC 1 cut(s) 1089
Bpu1102I GCTNAGC 1 cut(s) 1536
BpuEI CTTGAG 1 cut(s) 710
BpuMI CCSGG 1 cut(s) 1054
BsaBI GATNNNNATC 1 cut(s) 1419
BsaHI GRCGYC 1 cut(s) 196
Bsc4I CCNNNNNNNGG 2 cut(s) 847, 983
Bse1I ACTGG 1 cut(s) 560
Bse3DI GCAATG 1 cut(s) 1036
Bse8I GATNNNNATC 1 cut(s) 1419
BseBI CCWGG 1 cut(s) 475
BseGI GGATG 2 cut(s) 1129, 1168
BseJI GATNNNNATC 1 cut(s) 1419
BseLI CCNNNNNNNGG 2 cut(s) 847, 983
BseMI GCAATG 1 cut(s) 1036
BseMII CTCAG 3 cut(s) 825, 1340, 1527
BseNI ACTGG 1 cut(s) 560
BseRI GAGGAG 2 cut(s) 1154, 1377
BseXI GCAGC 3 cut(s) 776, 895, 1269
Bsh1236I CGCG 1 cut(s) 302
BshFI GGCC 1 cut(s) 86
BshNI GGYRCC 2 cut(s) 195, 296
BsiHKAI GWGCWC 2 cut(s) 1052, 1542
BsiSI CCGG 1 cut(s) 1053
BslFI GGGAC 1 cut(s) 796
BslI CCNNNNNNNGG 2 cut(s) 847, 983
BsmAI GTCTC 1 cut(s) 975
BsmFI GGGAC 1 cut(s) 796
BsmI GAATGC 4 cut(s) 175, 280, 446, 662
BsnI GGCC 1 cut(s) 86
Bsp1286I GDGCHC 2 cut(s) 1052, 1542
Bsp143I GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
Bsp1720I GCTNAGC 1 cut(s) 1536
BspACI CCGC 2 cut(s) 300, 642
BspANI GGCC 1 cut(s) 86
BspCNI CTCAG 3 cut(s) 826, 1341, 1528
BspFNI CGCG 1 cut(s) 302
BspHI TCATGA 1 cut(s) 424
BspLI GGNNCC 2 cut(s) 197, 298
BspOI GCTAGC 1 cut(s) 488
BspPI GGATC 3 cut(s) 832, 1101, 1296
BspT107I GGYRCC 2 cut(s) 195, 296
BsrBI CCGCTC 1 cut(s) 644
BsrDI GCAATG 1 cut(s) 1036
BsrI ACTGG 1 cut(s) 560
BssMI GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
BssNI GRCGYC 1 cut(s) 196
Bst2UI CCWGG 1 cut(s) 475
Bst4CI ACNGT 6 cut(s) 61, 75, 356, 481, 665, 1135
BstACI GRCGYC 1 cut(s) 196
BstAPI GCANNNNNTGC 2 cut(s) 227, 917
BstC8I GCNNGC 5 cut(s) 9, 420, 486, 803, 1255
BstDEI CTNAG 5 cut(s) 47, 834, 1089, 1349, 1536
BstF5I GGATG 2 cut(s) 1129, 1168
BstFNI CGCG 1 cut(s) 302
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 8 cut(s) 203, 840, 1096, 1101, 1270, 1304, 1324, 1423
BstMAI GTCTC 1 cut(s) 975
BstMBI GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
BstNI CCWGG 1 cut(s) 475
BstNSI RCATGY 4 cut(s) 177, 422, 789, 1195
BstSCI CCNGG 2 cut(s) 473, 1052
BstUI CGCG 1 cut(s) 302
BstV1I GCAGC 3 cut(s) 776, 895, 1269
BstV2I GAAGAC 1 cut(s) 931
BstX2I RGATCY 3 cut(s) 837, 1093, 1301
BstXI CCANNNNNNTGG 1 cut(s) 555
BstYI RGATCY 3 cut(s) 837, 1093, 1301
BsuRI GGCC 1 cut(s) 86
BtsCI GGATG 2 cut(s) 1129, 1168
BtsIMutI CAGTG 2 cut(s) 553, 670
Cac8I GCNNGC 5 cut(s) 9, 420, 486, 803, 1255
CaiI CAGNNNCTG 2 cut(s) 1319, 1535
CciI TCATGA 1 cut(s) 424
CfoI GCGC 1 cut(s) 198
Cfr13I GGNCC 1 cut(s) 850
Csp6I GTAC 2 cut(s) 269, 562
CspCI CAANNNNNGTGG 2 cut(s) 738, 773
CviQI GTAC 2 cut(s) 269, 562
DdeI CTNAG 5 cut(s) 47, 834, 1089, 1349, 1536
DinI GGCGCC 1 cut(s) 197
DpnI GATC 8 cut(s) 202, 839, 1095, 1100, 1269, 1303, 1323, 1422
DpnII GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
Ecl136II GAGCTC 2 cut(s) 1050, 1540
Eco24I GRGCYC 2 cut(s) 1052, 1542
Eco47I GGWCC 1 cut(s) 850
Eco53kI GAGCTC 2 cut(s) 1050, 1540
Eco57I CTGAAG 2 cut(s) 431, 1227
EcoICRI GAGCTC 2 cut(s) 1050, 1540
EcoRII CCWGG 1 cut(s) 473
EcoT22I ATGCAT 1 cut(s) 175
EcoT38I GRGCYC 2 cut(s) 1052, 1542
EgeI GGCGCC 1 cut(s) 197
EheI GGCGCC 1 cut(s) 197
FalI AAGNNNNNCTT 3 cut(s) 32, 214, 246
FaqI GGGAC 1 cut(s) 796
FbaI TGATCA 1 cut(s) 1098
Fnu4HI GCNGC 4 cut(s) 300, 790, 909, 1258
FokI GGATG 2 cut(s) 1136, 1175
FriOI GRGCYC 2 cut(s) 1052, 1542
Fsp4HI GCNGC 4 cut(s) 300, 790, 909, 1258
FspBI CTAG 3 cut(s) 485, 902, 1543
GlaI GCGC 1 cut(s) 197
GluI GCNGC 4 cut(s) 300, 790, 909, 1258
HaeII RGCGCY 1 cut(s) 199
HaeIII GGCC 1 cut(s) 86
HapII CCGG 1 cut(s) 1053
HhaI GCGC 1 cut(s) 198
Hin1I GRCGYC 1 cut(s) 196
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HincII GTYRAC 1 cut(s) 734
HindII GTYRAC 1 cut(s) 734
HindIII AAGCTT 1 cut(s) 9
HinfI GANTC 4 cut(s) 21, 761, 829, 898
HpaII CCGG 1 cut(s) 1053
HphI GGTGA 2 cut(s) 413, 665
Hpy166II GTNNAC 6 cut(s) 67, 154, 340, 404, 734, 760
Hpy188I TCNGA 3 cut(s) 1098, 1350, 1425
Hpy188III TCNNGA 7 cut(s) 425, 833, 972, 1082, 1147, 1226, 1234
Hpy8I GTNNAC 6 cut(s) 67, 154, 340, 404, 734, 760
HpyAV CCTTC 6 cut(s) 97, 107, 406, 428, 598, 1202
HpyCH4III ACNGT 6 cut(s) 61, 75, 356, 481, 665, 1135
HpyCH4V TGCA 9 cut(s) 56, 173, 801, 911, 997, 1166, 1247, 1257, 1313
HpyF3I CTNAG 5 cut(s) 47, 834, 1089, 1349, 1536
Hsp92I GRCGYC 1 cut(s) 196
HspAI GCGC 1 cut(s) 196
KasI GGCGCC 1 cut(s) 195
Ksp22I TGATCA 1 cut(s) 1098
Kzo9I GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
LmnI GCTCC 3 cut(s) 415, 550, 1055
Lsp1109I GCAGC 3 cut(s) 776, 895, 1269
LweI GCATC 3 cut(s) 1153, 1256, 1354
MaeI CTAG 3 cut(s) 485, 902, 1543
MaeIII GTNAC 2 cut(s) 1066, 1337
MalI GATC 8 cut(s) 202, 839, 1095, 1100, 1269, 1303, 1323, 1422
MbiI CCGCTC 1 cut(s) 644
MboI GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
MflI RGATCY 3 cut(s) 837, 1093, 1301
MhlI GDGCHC 2 cut(s) 1052, 1542
MluCI AATT 7 cut(s) 369, 694, 711, 740, 865, 943, 1437
Mly113I GGCGCC 1 cut(s) 196
MlyI GAGTC 2 cut(s) 755, 907
MnlI CCTC 9 cut(s) 192, 236, 998, 1054, 1132, 1145, 1234, 1355, 1358
Mph1103I ATGCAT 1 cut(s) 175
MseI TTAA 4 cut(s) 530, 717, 876, 1404
MslI CAYNNNNRTG 1 cut(s) 423
MspI CCGG 1 cut(s) 1053
MspR9I CCNGG 2 cut(s) 475, 1054
Mva1269I GAATGC 4 cut(s) 175, 280, 446, 662
MvaI CCWGG 1 cut(s) 475
MvnI CGCG 1 cut(s) 302
NarI GGCGCC 1 cut(s) 196
NciI CCSGG 1 cut(s) 1054
NdeII GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
NheI GCTAGC 1 cut(s) 484
NlaIV GGNNCC 2 cut(s) 197, 298
NmuCI GTSAC 1 cut(s) 1066
NsiI ATGCAT 1 cut(s) 175
NspI RCATGY 4 cut(s) 177, 422, 789, 1195
PaeI GCATGC 1 cut(s) 422
PagI TCATGA 1 cut(s) 424
PciI ACATGT 1 cut(s) 1191
PctI GAATGC 4 cut(s) 175, 280, 446, 662
PfeI GAWTC 2 cut(s) 21, 829
PflMI CCANNNNNTGG 1 cut(s) 847
PfoI TCCNGGA 1 cut(s) 1052
PkrI GCNGC 4 cut(s) 301, 791, 910, 1259
PleI GAGTC 2 cut(s) 755, 906
PluTI GGCGCC 1 cut(s) 199
PpsI GAGTC 2 cut(s) 755, 906
PscI ACATGT 1 cut(s) 1191
PshBI ATTAAT 1 cut(s) 530
Psp124BI GAGCTC 2 cut(s) 1052, 1542
Psp6I CCWGG 1 cut(s) 473
PspGI CCWGG 1 cut(s) 473
PspN4I GGNNCC 2 cut(s) 197, 298
PspPI GGNCC 1 cut(s) 850
PstNI CAGNNNCTG 2 cut(s) 1319, 1535
PsuI RGATCY 3 cut(s) 837, 1093, 1301
RsaI GTAC 2 cut(s) 270, 563
RsaNI GTAC 2 cut(s) 269, 562
RseI CAYNNNNRTG 1 cut(s) 423
SacI GAGCTC 2 cut(s) 1052, 1542
SaqAI TTAA 4 cut(s) 530, 717, 876, 1404
SatI GCNGC 4 cut(s) 300, 790, 909, 1258
Sau3AI GATC 8 cut(s) 200, 837, 1093, 1098, 1267, 1301, 1321, 1420
Sau96I GGNCC 1 cut(s) 850
SchI GAGTC 2 cut(s) 755, 907
ScrFI CCNGG 2 cut(s) 475, 1054
SduI GDGCHC 2 cut(s) 1052, 1542
SfaNI GCATC 3 cut(s) 1153, 1256, 1354
SfoI GGCGCC 1 cut(s) 197
SinI GGWCC 1 cut(s) 850
SmiMI CAYNNNNRTG 1 cut(s) 423
SmlI CTYRAG 1 cut(s) 689
SmoI CTYRAG 1 cut(s) 689
SphI GCATGC 1 cut(s) 422
Sse9I AATT 7 cut(s) 369, 694, 711, 740, 865, 943, 1437
SsiI CCGC 2 cut(s) 300, 642
SspDI GGCGCC 1 cut(s) 195
SspI AATATT 1 cut(s) 1183
SspMI CTAG 3 cut(s) 485, 902, 1543
SstI GAGCTC 2 cut(s) 1052, 1542
StyD4I CCNGG 2 cut(s) 473, 1052
TaaI ACNGT 6 cut(s) 61, 75, 356, 481, 665, 1135
TaqI TCGA 3 cut(s) 965, 973, 1003
TasI AATT 7 cut(s) 369, 694, 711, 740, 865, 943, 1437
TatI WGTACW 1 cut(s) 561
TauI GCSGC 1 cut(s) 302
TfiI GAWTC 2 cut(s) 21, 829
Tru1I TTAA 4 cut(s) 530, 717, 876, 1404
Tru9I TTAA 4 cut(s) 530, 717, 876, 1404
TscAI CASTG 2 cut(s) 560, 670
TseFI GTSAC 1 cut(s) 1066
TseI GCWGC 3 cut(s) 789, 908, 1257
Tsp45I GTSAC 1 cut(s) 1066
TspDTI ATGAA 5 cut(s) 222, 362, 444, 496, 734
TspGWI ACGGA 2 cut(s) 202, 286
TspRI CASTG 2 cut(s) 560, 670
Van91I CCANNNNNTGG 1 cut(s) 847
VpaK11BI GGWCC 1 cut(s) 850
VspI ATTAAT 1 cut(s) 530
XapI RAATTY 3 cut(s) 711, 740, 943
XceI RCATGY 4 cut(s) 177, 422, 789, 1195
XspI CTAG 3 cut(s) 485, 902, 1543
Zsp2I ATGCAT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.