Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Forward (+)

14356465 .. 14357550

Gene Structure 1086 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G116500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGGAGCAGCAGCTGCAGCCACCGCCCATGGCAGTGACCCAGCAAGCCTACACGACCCATTCGGGTCACGGGTCGGTGGGACCCGTGATTGCAGTGGTTGCAGTGATCACCATCCTCGGAGTCATAGCCGGTATGATTGGTAGGCTCTGCTCGGGTCGTCGGATCATGGGTCATGGACGGTACTATGACTTCGAAGCATGGGTCGAGACAAAATGCTCATCGTGTCTAGATGGCAGACTCGACCCTCCTCCGCCGCCTCTGGCTGCAGTCCCCGGTGAGAATGTTCTGGCGGCCGAGGCAGCAGACACATCACCAGAAATAAAGGAAGAAGAAGAGCAACAACAACAGCAGCAGCAACAACAACATCATCAACAACAACAACAACAACAACATCAACATCAACTTCAACATCAGCAACATCAGCAACATCAGCAACAAGAACAACACAATTTACATGCAACAAGTAGTAGTGAGTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.71

Weight (kDa)

5.64

Isoelectric Point (pI)

77.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	23, 251, 254, 290
AclWI	GGATC	1 cut(s)	170
AcoI	YGGCCR	1 cut(s)	291
AfaI	GTAC	1 cut(s)	182
AgsI	TTSAA	1 cut(s)	407
AluBI	AGCT	1 cut(s)	13
AluI	AGCT	1 cut(s)	13
Alw26I	GTCTC	1 cut(s)	200
AlwI	GGATC	1 cut(s)	170
AlwNI	CAGNNNCTG	1 cut(s)	13
Ama87I	CYCGRG	1 cut(s)	151
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	8 cut(s)	7, 10, 13, 16, 263, 299, 349, 352
ArsI	GACNNNNNNTTYG	2 cut(s)	186, 218
AspS9I	GGNCC	1 cut(s)	80
AsuC2I	CCSGG	1 cut(s)	273
AsuHPI	GGTGA	3 cut(s)	100, 287, 303
AsuII	TTCGAA	1 cut(s)	192
AvaI	CYCGRG	1 cut(s)	151
AvaII	GGWCC	1 cut(s)	80
BarI	GAAGNNNNNNTAC	2 cut(s)	173, 205
BbvI	GCAGC	7 cut(s)	19, 22, 28, 250, 311, 361, 364
BccI	CCATC	2 cut(s)	119, 224
BclI	TGATCA	1 cut(s)	105
BcnI	CCSGG	1 cut(s)	273
BcoDI	GTCTC	1 cut(s)	200
BfaI	CTAG	1 cut(s)	227
BfmI	CTRYAG	2 cut(s)	14, 264
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	80
BmeT110I	CYCGRG	1 cut(s)	151
BmgT120I	GGNCC	1 cut(s)	80
BmiI	GGNNCC	2 cut(s)	81, 82
BmrFI	CCNGG	1 cut(s)	273
Bpu14I	TTCGAA	1 cut(s)	192
BpuMI	CCSGG	1 cut(s)	273
BsaBI	GATNNNNATC	1 cut(s)	110
BsaJI	CCNNGG	4 cut(s)	27, 115, 271, 294
Bse118I	RCCGGY	1 cut(s)	128
Bse8I	GATNNNNATC	1 cut(s)	110
BseDI	CCNNGG	4 cut(s)	27, 115, 271, 294
BseGI	GGATG	1 cut(s)	111
BseJI	GATNNNNATC	1 cut(s)	110
BseRI	GAGGAG	1 cut(s)	237
BseX3I	CGGCCG	1 cut(s)	291
BseXI	GCAGC	7 cut(s)	19, 22, 28, 250, 311, 361, 364
BseYI	CCCAGC	1 cut(s)	39
Bsh1285I	CGRYCG	1 cut(s)	294
BshFI	GGCC	1 cut(s)	293
BsiEI	CGRYCG	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	151
BsiSI	CCGG	2 cut(s)	129, 273
BslFI	GGGAC	2 cut(s)	93, 254
BsmAI	GTCTC	1 cut(s)	200
BsmFI	GGGAC	2 cut(s)	93, 254
BsnI	GGCC	1 cut(s)	293
BsoBI	CYCGRG	1 cut(s)	151
Bsp119I	TTCGAA	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	105, 162
Bsp19I	CCATGG	1 cut(s)	27
BspACI	CCGC	4 cut(s)	23, 251, 254, 290
BspANI	GGCC	1 cut(s)	293
BspLI	GGNNCC	2 cut(s)	81, 82
BspMAI	CTGCAG	2 cut(s)	18, 268
BspPI	GGATC	1 cut(s)	170
BspQI	GCTCTTC	1 cut(s)	327
BspT104I	TTCGAA	1 cut(s)	192
BsrFI	RCCGGY	1 cut(s)	128
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	4 cut(s)	27, 115, 271, 294
BssMI	GATC	2 cut(s)	105, 162
BssT1I	CCWWGG	1 cut(s)	27
Bst4CI	ACNGT	1 cut(s)	180
Bst6I	CTCTTC	1 cut(s)	327
BstAPI	GCANNNNNTGC	2 cut(s)	13, 98
BstBI	TTCGAA	1 cut(s)	192
BstC8I	GCNNGC	1 cut(s)	45
BstDSI	CCRYGG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	111
BstKTI	GATC	2 cut(s)	108, 165
BstMAI	GTCTC	1 cut(s)	200
BstMBI	GATC	2 cut(s)	105, 162
BstMCI	CGRYCG	1 cut(s)	294
BstMWI	GCNNNNNNNGC	8 cut(s)	13, 16, 22, 98, 296, 299, 421, 430
BstNSI	RCATGY	1 cut(s)	458
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	2 cut(s)	14, 264
BstV1I	GCAGC	7 cut(s)	19, 22, 28, 250, 311, 361, 364
BstZI	CGGCCG	1 cut(s)	291
BsuRI	GGCC	1 cut(s)	293
BtgI	CCRYGG	1 cut(s)	27
BtsCI	GGATG	1 cut(s)	111
BtsI	GCAGTG	3 cut(s)	39, 99, 108
BtsIMutI	CAGTG	3 cut(s)	39, 99, 108
Cac8I	GCNNGC	1 cut(s)	45
CaiI	CAGNNNCTG	1 cut(s)	13
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	80
Csp6I	GTAC	1 cut(s)	181
CviAII	CATG	5 cut(s)	28, 166, 173, 198, 455
CviJI	RGCY	7 cut(s)	13, 19, 47, 128, 145, 263, 293
CviKI_1	RGCY	7 cut(s)	13, 19, 47, 128, 145, 263, 293
CviQI	GTAC	1 cut(s)	181
DpnI	GATC	2 cut(s)	107, 164
DpnII	GATC	2 cut(s)	105, 162
EaeI	YGGCCR	1 cut(s)	291
EagI	CGGCCG	1 cut(s)	291
Eam1104I	CTCTTC	1 cut(s)	327
EarI	CTCTTC	1 cut(s)	327
EciI	GGCGGA	1 cut(s)	240
EclXI	CGGCCG	1 cut(s)	291
Eco130I	CCWWGG	1 cut(s)	27
Eco47I	GGWCC	1 cut(s)	80
Eco52I	CGGCCG	1 cut(s)	291
Eco88I	CYCGRG	1 cut(s)	151
EcoO109I	RGGNCCY	1 cut(s)	80
EcoT14I	CCWWGG	1 cut(s)	27
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	5 cut(s)	31, 169, 176, 201, 458
FaiI	YATR	8 cut(s)	29, 125, 134, 167, 174, 186, 199, 456
FaqI	GGGAC	2 cut(s)	93, 254
FatI	CATG	5 cut(s)	27, 165, 172, 197, 454
FbaI	TGATCA	1 cut(s)	105
FokI	GGATG	1 cut(s)	98
FspBI	CTAG	1 cut(s)	227
GsaI	CCCAGC	1 cut(s)	43
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	2 cut(s)	129, 273
Hin1II	CATG	5 cut(s)	31, 169, 176, 201, 458
HinfI	GANTC	2 cut(s)	120, 237
HpaII	CCGG	2 cut(s)	129, 273
HphI	GGTGA	3 cut(s)	100, 287, 303
Hpy188I	TCNGA	2 cut(s)	119, 162
Hpy188III	TCNNGA	2 cut(s)	205, 227
Hpy99I	CGWCG	1 cut(s)	162
HpyCH4III	ACNGT	1 cut(s)	180
HpyCH4V	TGCA	5 cut(s)	16, 92, 101, 266, 458
HpyF10VI	GCNNNNNNNGC	8 cut(s)	13, 16, 22, 98, 296, 299, 421, 430
Hsp92II	CATG	5 cut(s)	31, 169, 176, 201, 458
KflI	GGGWCCC	1 cut(s)	80
Ksp22I	TGATCA	1 cut(s)	105
Kzo9I	GATC	2 cut(s)	105, 162
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	53, 142, 245, 272, 286, 327
Lsp1109I	GCAGC	7 cut(s)	19, 22, 28, 250, 311, 361, 364
MaeI	CTAG	1 cut(s)	227
MaeIII	GTNAC	2 cut(s)	34, 65
MalI	GATC	2 cut(s)	107, 164
MboI	GATC	2 cut(s)	105, 162
MboII	GAAGA	3 cut(s)	338, 341, 344
MluCI	AATT	1 cut(s)	448
MlyI	GAGTC	2 cut(s)	129, 231
MmeI	TCCRAC	1 cut(s)	140
MnlI	CCTC	5 cut(s)	125, 255, 258, 267, 289
MseI	TTAA	1 cut(s)	478
MslI	CAYNNNNRTG	1 cut(s)	32
MspA1I	CMGCKG	1 cut(s)	13
MspI	CCGG	2 cut(s)	129, 273
MspR9I	CCNGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	8 cut(s)	13, 16, 22, 98, 296, 299, 421, 430
NciI	CCSGG	1 cut(s)	273
NcoI	CCATGG	1 cut(s)	27
NdeII	GATC	2 cut(s)	105, 162
NlaIII	CATG	5 cut(s)	31, 169, 176, 201, 458
NlaIV	GGNNCC	2 cut(s)	81, 82
NmeAIII	GCCGAG	1 cut(s)	319
NmuCI	GTSAC	2 cut(s)	34, 65
NspI	RCATGY	1 cut(s)	458
NspV	TTCGAA	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	327
PleI	GAGTC	2 cut(s)	128, 231
PpsI	GAGTC	2 cut(s)	128, 231
PpuMI	RGGWCCY	1 cut(s)	80
Psp5II	RGGWCCY	1 cut(s)	80
PspFI	CCCAGC	1 cut(s)	39
PspN4I	GGNNCC	2 cut(s)	81, 82
PspPI	GGNCC	1 cut(s)	80
PspPPI	RGGWCCY	1 cut(s)	80
PstI	CTGCAG	2 cut(s)	18, 268
PstNI	CAGNNNCTG	1 cut(s)	13
PvuII	CAGCTG	1 cut(s)	13
RsaI	GTAC	1 cut(s)	182
RsaNI	GTAC	1 cut(s)	181
RseI	CAYNNNNRTG	1 cut(s)	32
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	1 cut(s)	478
Sau3AI	GATC	2 cut(s)	105, 162
Sau96I	GGNCC	1 cut(s)	80
SchI	GAGTC	2 cut(s)	129, 231
ScrFI	CCNGG	1 cut(s)	273
SetI	ASST	1 cut(s)	15
SfcI	CTRYAG	2 cut(s)	14, 264
SfuI	TTCGAA	1 cut(s)	192
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	448
SsiI	CCGC	4 cut(s)	23, 251, 254, 290
SspMI	CTAG	1 cut(s)	227
StyD4I	CCNGG	1 cut(s)	271
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	180
TaqI	TCGA	3 cut(s)	192, 204, 240
TasI	AATT	1 cut(s)	448
TauI	GCSGC	2 cut(s)	256, 293
Tru1I	TTAA	1 cut(s)	478
Tru9I	TTAA	1 cut(s)	478
TscAI	CASTG	3 cut(s)	39, 99, 108
TseFI	GTSAC	2 cut(s)	34, 65
TseI	GCWGC	8 cut(s)	7, 10, 13, 16, 263, 299, 349, 352
Tsp45I	GTSAC	2 cut(s)	34, 65
TspRI	CASTG	3 cut(s)	39, 99, 108
VpaK11BI	GGWCC	1 cut(s)	80
XbaI	TCTAGA	1 cut(s)	226
XceI	RCATGY	1 cut(s)	458
XspI	CTAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.