Prupe.1G441900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0006082
Physical Location & Seq
Reverse (-)
37505920 .. 37506294
375 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G441900.1

Sequence Viewer

Length: 375 bp
ATGTCAATGCCATTAGATCAGCAACCTCCACCAGACTTTGTGCTGCAGCAAAATGCAAACCCTCACTCACCCCATGGCTCCATTGGAGCAGTGGTTGCTGTTCTTGTTGTGGTCATAATCTTGGGTGTGGTTGCTGTTGTAATTGGGAGGCTCTGCTCTGGTAGGAGCATAATAGGATATGGCCATTATGATTTGGAGAGCTGGGCAGAGACAAAATGCTCATCTTGCATTGATGGAAGAATCAACCCACCACTTTCCAGGCCTAATGTGTCTTGCTCCTCTGTTTCAACTTCAACTCCAGCCCAAACCCATCAAGGATCTGAGCTTCAGCAAGAAGAGCAATCTCCTCAAACCCCACAACCTGCAAATCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.12

Weight (kDa)

5.34

Isoelectric Point (pI)

76.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 370
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 181
AcuI CTGAAG 1 cut(s) 311
AgsI TTSAA 2 cut(s) 288, 294
AjnI CCWGG 1 cut(s) 257
AluBI AGCT 2 cut(s) 201, 325
AluI AGCT 2 cut(s) 201, 325
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 1 cut(s) 325
AoxI GGCC 2 cut(s) 181, 260
ApeKI GCWGC 2 cut(s) 43, 46
AsuHPI GGTGA 1 cut(s) 60
BalI TGGCCA 1 cut(s) 183
BbvI GCAGC 2 cut(s) 30, 58
BccI CCATC 2 cut(s) 227, 318
BciT130I CCWGG 1 cut(s) 259
BcoDI GTCTC 1 cut(s) 203
BfmI CTRYAG 1 cut(s) 44
BfuAI ACCTGC 1 cut(s) 370
BisI GCNGC 2 cut(s) 44, 47
BlsI GCNGC 2 cut(s) 45, 48
Bme1390I CCNGG 1 cut(s) 259
BmiI GGNNCC 1 cut(s) 79
BmrFI CCNGG 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 282
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 4 cut(s) 78, 108, 280, 310
BseBI CCWGG 1 cut(s) 259
BseDI CCNNGG 1 cut(s) 73
BseMII CTCAG 1 cut(s) 312
BseRI GAGGAG 2 cut(s) 268, 336
BseXI GCAGC 2 cut(s) 30, 58
BseYI CCCAGC 1 cut(s) 201
BshFI GGCC 2 cut(s) 183, 262
BsmAI GTCTC 1 cut(s) 203
BsnI GGCC 2 cut(s) 183, 262
Bsp143I GATC 2 cut(s) 16, 317
Bsp19I CCATGG 1 cut(s) 73
BspANI GGCC 2 cut(s) 183, 262
BspCNI CTCAG 1 cut(s) 313
BspLI GGNNCC 1 cut(s) 79
BspMAI CTGCAG 1 cut(s) 48
BspMI ACCTGC 1 cut(s) 370
BspPI GGATC 1 cut(s) 325
BspQI GCTCTTC 1 cut(s) 330
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 2 cut(s) 16, 317
BssT1I CCWWGG 1 cut(s) 73
Bst2UI CCWGG 1 cut(s) 259
Bst6I CTCTTC 1 cut(s) 330
BstAPI GCANNNNNTGC 1 cut(s) 95
BstDEI CTNAG 1 cut(s) 321
BstDSI CCRYGG 1 cut(s) 73
BstKTI GATC 2 cut(s) 19, 320
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 2 cut(s) 16, 317
BstMWI GCNNNNNNNGC 3 cut(s) 95, 225, 337
BstNI CCWGG 1 cut(s) 259
BstSCI CCNGG 1 cut(s) 257
BstSFI CTRYAG 1 cut(s) 44
BstV1I GCAGC 2 cut(s) 30, 58
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
BsuRI GGCC 2 cut(s) 183, 262
BtgI CCRYGG 1 cut(s) 73
BtsI GCAGTG 1 cut(s) 96
BtsIMutI CAGTG 1 cut(s) 96
BveI ACCTGC 1 cut(s) 370
CviAII CATG 1 cut(s) 74
CviJI RGCY 7 cut(s) 78, 151, 183, 201, 262, 302, 325
CviKI_1 RGCY 7 cut(s) 78, 151, 183, 201, 262, 302, 325
DdeI CTNAG 1 cut(s) 321
DpnI GATC 2 cut(s) 18, 319
DpnII GATC 2 cut(s) 16, 317
EaeI YGGCCR 1 cut(s) 181
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
Eco130I CCWWGG 1 cut(s) 73
Eco147I AGGCCT 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 311
EcoRII CCWGG 1 cut(s) 257
EcoT14I CCWWGG 1 cut(s) 73
ErhI CCWWGG 1 cut(s) 73
FaeI CATG 1 cut(s) 77
FaiI YATR 5 cut(s) 75, 116, 170, 180, 189
FatI CATG 1 cut(s) 73
Fnu4HI GCNGC 2 cut(s) 44, 47
Fsp4HI GCNGC 2 cut(s) 44, 47
GluI GCNGC 2 cut(s) 44, 47
GsaI CCCAGC 1 cut(s) 205
GsuI CTGGAG 1 cut(s) 282
HaeIII GGCC 2 cut(s) 183, 262
Hin1II CATG 1 cut(s) 77
HinfI GANTC 1 cut(s) 240
HphI GGTGA 1 cut(s) 60
Hpy188I TCNGA 1 cut(s) 322
HpyCH4V TGCA 4 cut(s) 46, 56, 228, 365
HpyF10VI GCNNNNNNNGC 3 cut(s) 95, 225, 337
HpyF3I CTNAG 1 cut(s) 321
Hsp92II CATG 1 cut(s) 77
Kzo9I GATC 2 cut(s) 16, 317
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 4 cut(s) 83, 86, 165, 281
LpnPI CCDG 6 cut(s) 45, 144, 187, 244, 271, 312
Lsp1109I GCAGC 2 cut(s) 30, 58
MalI GATC 2 cut(s) 18, 319
MboI GATC 2 cut(s) 16, 317
MboII GAAGA 2 cut(s) 249, 347
MflI RGATCY 1 cut(s) 317
MlsI TGGCCA 1 cut(s) 183
MluCI AATT 1 cut(s) 141
MluNI TGGCCA 1 cut(s) 183
MnlI CCTC 5 cut(s) 36, 72, 141, 289, 357
Mox20I TGGCCA 1 cut(s) 183
MscI TGGCCA 1 cut(s) 183
Msp20I TGGCCA 1 cut(s) 183
MspR9I CCNGG 1 cut(s) 259
MvaI CCWGG 1 cut(s) 259
MwoI GCNNNNNNNGC 3 cut(s) 95, 225, 337
NcoI CCATGG 1 cut(s) 73
NdeII GATC 2 cut(s) 16, 317
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 1 cut(s) 79
PceI AGGCCT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 330
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 2 cut(s) 45, 48
Psp6I CCWGG 1 cut(s) 257
PspFI CCCAGC 1 cut(s) 201
PspGI CCWGG 1 cut(s) 257
PspN4I GGNNCC 1 cut(s) 79
PstI CTGCAG 1 cut(s) 48
PsuI RGATCY 1 cut(s) 317
SapI GCTCTTC 1 cut(s) 330
SatI GCNGC 2 cut(s) 44, 47
Sau3AI GATC 2 cut(s) 16, 317
ScrFI CCNGG 1 cut(s) 259
SetI ASST 4 cut(s) 28, 203, 327, 364
SfcI CTRYAG 1 cut(s) 44
Sse9I AATT 1 cut(s) 141
SseBI AGGCCT 1 cut(s) 262
StuI AGGCCT 1 cut(s) 262
StyD4I CCNGG 1 cut(s) 257
StyI CCWWGG 1 cut(s) 73
TasI AATT 1 cut(s) 141
TfiI GAWTC 1 cut(s) 240
TscAI CASTG 1 cut(s) 96
TseI GCWGC 2 cut(s) 43, 46
TspRI CASTG 1 cut(s) 96
XcmI CCANNNNNNNNNTGG 2 cut(s) 80, 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.