Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Reverse (-)

5658107 .. 5659428

Gene Structure 1322 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g06840.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGTCCGCTACACCTATGGAGCAACTGCAGCCACCACCACCACCGGCACCAGTTTATGCGACCCAGCAAGCCTACACGACCCATTCGGGTCACGGGTCGGTCGGCCCCTTGATTGCAGTGCTGGCAGTGATCACCGTCCTCGGAGTCATAGCGGGAATGATCGGCCGGCTCTGCTCCGGTCGTCGGATCATGGGTCATGGACAGCACTACGACTTCGAAGCATGGCTCGAGAAGAAATGCTCGTCTTGCATCGACGGGAGGATCGCCCCTCCGCCTCCGCCGCCCCATATTCCGGCTACCGCCTCCGTCGAGGAGGTTCCGGCGGCCGAGCCGGAGGTTGAGAGCGTGCAAGAGATAAAGGAAGAAGAACGAGTACAGCCTCAGCAGCAAAAACAACGTCATCAAAATCAACAGCAGCAGCACCAACAACAAGAACAGCAGCAGCAGGTGCAACAACAACAACACCACCAGCAACAACAACAACAACACCACCACCACCACCAACAACAACAACAACAACAACAACAACAACAACAGCAGCAGCAGCAGCAGCAAGAACATGAACAGAATTCAGAGGAAAAAGGTGGTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.49

Weight (kDa)

5.88

Isoelectric Point (pI)

94.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	436
Acc36I	ACCTGC	1 cut(s)	436
AccB1I	GGYRCC	1 cut(s)	46
AciI	CCGC	7 cut(s)	6, 152, 272, 278, 281, 300, 323
AclWI	GGATC	2 cut(s)	194, 269
AcoI	YGGCCR	2 cut(s)	163, 324
AcsI	RAATTY	1 cut(s)	568
AfaI	GTAC	1 cut(s)	375
AfiI	CCNNNNNNNGG	2 cut(s)	183, 292
Alw26I	GTCTC	1 cut(s)	584
AlwI	GGATC	2 cut(s)	194, 269
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	3 cut(s)	103, 163, 324
ApoI	RAATTY	1 cut(s)	568
ArsI	GACNNNNNNTTYG	2 cut(s)	382, 414
AspS9I	GGNCC	1 cut(s)	104
AsuHPI	GGTGA	1 cut(s)	124
AsuII	TTCGAA	1 cut(s)	216
AvaI	CYCGRG	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	357, 389
BbvCI	CCTCAGC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	1 cut(s)	584
BfmI	CTRYAG	1 cut(s)	26
BfuAI	ACCTGC	1 cut(s)	436
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	104
BmiI	GGNNCC	3 cut(s)	48, 106, 318
BmsI	GCATC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	381
Bpu14I	TTCGAA	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	139
BsaWI	WCCGGW	1 cut(s)	176
Bsc4I	CCNNNNNNNGG	2 cut(s)	183, 292
Bse118I	RCCGGY	2 cut(s)	43, 165
Bse1I	ACTGG	1 cut(s)	50
BseDI	CCNNGG	1 cut(s)	139
BseLI	CCNNNNNNNGG	2 cut(s)	183, 292
BseMII	CTCAG	1 cut(s)	395
BseNI	ACTGG	1 cut(s)	50
BseRI	GAGGAG	1 cut(s)	326
BseX3I	CGGCCG	2 cut(s)	163, 324
BseYI	CCCAGC	1 cut(s)	63
Bsh1285I	CGRYCG	4 cut(s)	102, 166, 181, 327
BshFI	GGCC	3 cut(s)	105, 165, 326
BshNI	GGYRCC	1 cut(s)	46
BsiEI	CGRYCG	4 cut(s)	102, 166, 181, 327
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	44, 166, 177, 293, 320, 332
BslI	CCNNNNNNNGG	2 cut(s)	183, 292
BsmAI	GTCTC	1 cut(s)	584
BsnI	GGCC	3 cut(s)	105, 165, 326
BsoBI	CYCGRG	1 cut(s)	227
Bsp119I	TTCGAA	1 cut(s)	216
Bsp143I	GATC	4 cut(s)	129, 159, 186, 261
BspACI	CCGC	7 cut(s)	6, 152, 272, 278, 281, 300, 323
BspANI	GGCC	3 cut(s)	105, 165, 326
BspCNI	CTCAG	1 cut(s)	394
BspLI	GGNNCC	3 cut(s)	48, 106, 318
BspMAI	CTGCAG	1 cut(s)	30
BspMI	ACCTGC	1 cut(s)	436
BspPI	GGATC	2 cut(s)	194, 269
BspT104I	TTCGAA	1 cut(s)	216
BspT107I	GGYRCC	1 cut(s)	46
BsrFI	RCCGGY	2 cut(s)	43, 165
BsrI	ACTGG	1 cut(s)	50
BssAI	RCCGGY	2 cut(s)	43, 165
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	4 cut(s)	129, 159, 186, 261
Bst4CI	ACNGT	1 cut(s)	136
BstAPI	GCANNNNNTGC	1 cut(s)	448
BstBI	TTCGAA	1 cut(s)	216
BstC8I	GCNNGC	4 cut(s)	69, 123, 167, 347
BstDEI	CTNAG	1 cut(s)	381
BstKTI	GATC	4 cut(s)	132, 162, 189, 264
BstMAI	GTCTC	1 cut(s)	584
BstMBI	GATC	4 cut(s)	129, 159, 186, 261
BstMCI	CGRYCG	4 cut(s)	102, 166, 181, 327
BstSFI	CTRYAG	1 cut(s)	26
BstZI	CGGCCG	2 cut(s)	163, 324
BsuRI	GGCC	3 cut(s)	105, 165, 326
BtsI	GCAGTG	2 cut(s)	123, 132
BtsIMutI	CAGTG	2 cut(s)	123, 132
BveI	ACCTGC	1 cut(s)	436
Cac8I	GCNNGC	4 cut(s)	69, 123, 167, 347
Cfr10I	RCCGGY	2 cut(s)	43, 165
Cfr13I	GGNCC	1 cut(s)	104
Csp6I	GTAC	1 cut(s)	374
CviAII	CATG	4 cut(s)	190, 197, 222, 560
CviQI	GTAC	1 cut(s)	374
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	4 cut(s)	131, 161, 188, 263
DpnII	GATC	4 cut(s)	129, 159, 186, 261
EaeI	YGGCCR	2 cut(s)	163, 324
EagI	CGGCCG	2 cut(s)	163, 324
EciI	GGCGGA	2 cut(s)	261, 267
EclXI	CGGCCG	2 cut(s)	163, 324
Eco52I	CGGCCG	2 cut(s)	163, 324
Eco88I	CYCGRG	1 cut(s)	227
EcoRI	GAATTC	1 cut(s)	568
FaeI	CATG	4 cut(s)	193, 200, 225, 563
FaiI	YATR	8 cut(s)	17, 57, 149, 191, 198, 223, 288, 561
FatI	CATG	4 cut(s)	189, 196, 221, 559
FauI	CCCGC	1 cut(s)	145
FbaI	TGATCA	1 cut(s)	129
GsaI	CCCAGC	1 cut(s)	67
HaeIII	GGCC	3 cut(s)	105, 165, 326
HapII	CCGG	6 cut(s)	44, 166, 177, 293, 320, 332
Hin1II	CATG	4 cut(s)	193, 200, 225, 563
HinfI	GANTC	1 cut(s)	144
HpaII	CCGG	6 cut(s)	44, 166, 177, 293, 320, 332
HphI	GGTGA	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	143, 186, 574
Hpy188III	TCNNGA	1 cut(s)	229
Hpy99I	CGWCG	3 cut(s)	186, 257, 311
HpyCH4III	ACNGT	1 cut(s)	136
HpyCH4IV	ACGT	1 cut(s)	397
HpyCH4V	TGCA	5 cut(s)	28, 116, 249, 349, 451
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	1 cut(s)	397
Hsp92II	CATG	4 cut(s)	193, 200, 225, 563
KroI	GCCGGC	1 cut(s)	165
KroNI	GCCGGC	1 cut(s)	167
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	4 cut(s)	129, 159, 186, 261
LmnI	GCTCC	2 cut(s)	19, 179
LweI	GCATC	1 cut(s)	258
MaeII	ACGT	1 cut(s)	397
MaeIII	GTNAC	1 cut(s)	89
MalI	GATC	4 cut(s)	131, 161, 188, 263
MboI	GATC	4 cut(s)	129, 159, 186, 261
MboII	GAAGA	3 cut(s)	244, 374, 377
MluCI	AATT	1 cut(s)	568
MlyI	GAGTC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	164
MroNI	GCCGGC	1 cut(s)	165
MspI	CCGG	6 cut(s)	44, 166, 177, 293, 320, 332
NaeI	GCCGGC	1 cut(s)	167
NdeII	GATC	4 cut(s)	129, 159, 186, 261
NgoMIV	GCCGGC	1 cut(s)	165
NlaIII	CATG	4 cut(s)	193, 200, 225, 563
NlaIV	GGNNCC	3 cut(s)	48, 106, 318
NmeAIII	GCCGAG	1 cut(s)	352
NmuCI	GTSAC	1 cut(s)	89
NspV	TTCGAA	1 cut(s)	216
PaeR7I	CTCGAG	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	436
PdiI	GCCGGC	1 cut(s)	167
PleI	GAGTC	1 cut(s)	152
PpsI	GAGTC	1 cut(s)	152
PspFI	CCCAGC	1 cut(s)	63
PspN4I	GGNNCC	3 cut(s)	48, 106, 318
PspPI	GGNCC	1 cut(s)	104
PstI	CTGCAG	1 cut(s)	30
RsaI	GTAC	1 cut(s)	375
RsaNI	GTAC	1 cut(s)	374
Sau3AI	GATC	4 cut(s)	129, 159, 186, 261
Sau96I	GGNCC	1 cut(s)	104
SchI	GAGTC	1 cut(s)	153
SetI	ASST	6 cut(s)	16, 318, 339, 400, 450, 586
SfaNI	GCATC	1 cut(s)	258
SfcI	CTRYAG	1 cut(s)	26
Sfr274I	CTCGAG	1 cut(s)	227
SfuI	TTCGAA	1 cut(s)	216
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	1 cut(s)	568
SsiI	CCGC	7 cut(s)	6, 152, 272, 278, 281, 300, 323
TaaI	ACNGT	1 cut(s)	136
TaiI	ACGT	1 cut(s)	400
TaqI	TCGA	4 cut(s)	216, 228, 252, 309
TaqII	GACCGA	1 cut(s)	88
TasI	AATT	1 cut(s)	568
TatI	WGTACW	1 cut(s)	373
TauI	GCSGC	2 cut(s)	283, 326
TscAI	CASTG	2 cut(s)	123, 132
TseFI	GTSAC	1 cut(s)	89
Tsp45I	GTSAC	1 cut(s)	89
TspDTI	ATGAA	1 cut(s)	576
TspGWI	ACGGA	1 cut(s)	295
TspRI	CASTG	2 cut(s)	123, 132
XapI	RAATTY	1 cut(s)	568
XhoI	CTCGAG	1 cut(s)	227

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.