RLG00000014559

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0006082
Physical Location & Seq
Forward (+)
54700707 .. 54701195
489 bp
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UTR
Exon/CDS
Intron
RLM00000014559

Sequence Viewer

Length: 489 bp
ATGTCCGCTACACCTATGGACCAGCTGCAACCACCACCACCACCCGTTTATGTGACCCAACAAGCCTACACGACCCATTCGGGTCACGGCTCGGTCGGGCCCTTGATTGCGGTGCTGGCAGTGATCACCATCCTCGGAGTCATAGCGGGAATGATAGGTCGGCTTTGCTCAGGTCGTCGGGTCATGGGTCATGGACAATACTACGACTTTGAAGCATGGCTCGAGAAGAGATGCTCGTCTTGCATTGACGGTAGGATCGAACCTCCGCCGCCCCATATTCCGGCTACCGCCTCCGTCGAGGAGGTTCAGGCGGCCGAGCTGGTGGTTGAGAACCCACAAGAGATGAAGGAAGAAGAACAAGTACAACCTCAGCAGCAGCAAAAACAACGTCAAAATCAACAACAACAGCAGCAGCAGCAGCAGCAACAACAGCAGCAGCAGCGACAACAACAAGAACAGAATTCACAGGAAAGAAGTGGTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

163

Amino Acids

18.21

Weight (kDa)

5.16

Isoelectric Point (pI)

86.22

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 7 cut(s) 6, 110, 146, 266, 269, 288, 311
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 312
AcsI RAATTY 1 cut(s) 460
AfaI GTAC 1 cut(s) 363
AfiI CCNNNNNNNGG 1 cut(s) 280
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 2 cut(s) 25, 319
AluI AGCT 2 cut(s) 25, 319
Alw26I GTCTC 1 cut(s) 476
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 98, 312
ApaI GGGCCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 460
ArsI GACNNNNNNTTYG 2 cut(s) 373, 405
AspS9I GGNCC 3 cut(s) 19, 98, 99
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 345, 377
BbvCI CCTCAGC 1 cut(s) 369
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 103
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 19, 98, 99
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 169, 369
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 280
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 280
BseMII CTCAG 2 cut(s) 183, 383
BseRI GAGGAG 1 cut(s) 314
BseSI GKGCMC 1 cut(s) 102
BseX3I CGGCCG 1 cut(s) 312
Bsh1285I CGRYCG 2 cut(s) 96, 315
BshFI GGCC 2 cut(s) 100, 314
BsiEI CGRYCG 2 cut(s) 96, 315
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 281
BslI CCNNNNNNNGG 1 cut(s) 280
BsmAI GTCTC 1 cut(s) 476
BsnI GGCC 2 cut(s) 100, 314
BsoBI CYCGRG 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 123, 255
BspACI CCGC 7 cut(s) 6, 110, 146, 266, 269, 288, 311
BspANI GGCC 2 cut(s) 100, 314
BspCNI CTCAG 2 cut(s) 182, 382
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 123, 255
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 169, 369
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 126, 258
BstMAI GTCTC 1 cut(s) 476
BstMBI GATC 2 cut(s) 123, 255
BstMCI CGRYCG 2 cut(s) 96, 315
BstMWI GCNNNNNNNGC 7 cut(s) 116, 240, 415, 418, 421, 430, 439
BstSLI GKGCMC 1 cut(s) 102
BstZI CGGCCG 1 cut(s) 312
BsuRI GGCC 2 cut(s) 100, 314
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 19, 98, 99
Csp6I GTAC 1 cut(s) 362
CviAII CATG 3 cut(s) 184, 191, 216
CviJI RGCY 9 cut(s) 25, 65, 90, 100, 163, 220, 284, 314, 319
CviKI_1 RGCY 9 cut(s) 25, 65, 90, 100, 163, 220, 284, 314, 319
CviQI GTAC 1 cut(s) 362
DdeI CTNAG 2 cut(s) 169, 369
DpnI GATC 2 cut(s) 125, 257
DpnII GATC 2 cut(s) 123, 255
EaeI YGGCCR 1 cut(s) 312
EagI CGGCCG 1 cut(s) 312
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 1 cut(s) 255
EclXI CGGCCG 1 cut(s) 312
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 312
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 1 cut(s) 99
EcoRI GAATTC 1 cut(s) 460
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 3 cut(s) 187, 194, 219
FaiI YATR 7 cut(s) 17, 51, 143, 185, 192, 217, 276
FatI CATG 3 cut(s) 183, 190, 215
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 123
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 100, 314
HapII CCGG 1 cut(s) 281
Hin1II CATG 3 cut(s) 187, 194, 219
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 281
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 180, 299
HpyAV CCTTC 1 cut(s) 340
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 388
HpyCH4V TGCA 2 cut(s) 28, 243
HpyF10VI GCNNNNNNNGC 7 cut(s) 116, 240, 415, 418, 421, 430, 439
HpyF3I CTNAG 2 cut(s) 169, 369
HpySE526I ACGT 1 cut(s) 388
Hsp92II CATG 3 cut(s) 187, 194, 219
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 255
LpnPI CCDG 7 cut(s) 35, 101, 156, 293, 294, 305, 452
LweI GCATC 1 cut(s) 221
MaeII ACGT 1 cut(s) 388
MaeIII GTNAC 2 cut(s) 52, 83
MalI GATC 2 cut(s) 125, 257
MboI GATC 2 cut(s) 123, 255
MboII GAAGA 3 cut(s) 238, 362, 365
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 460
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 6 cut(s) 143, 273, 292, 295, 301, 378
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 281
MwoI GCNNNNNNNGC 7 cut(s) 116, 240, 415, 418, 421, 430, 439
NdeII GATC 2 cut(s) 123, 255
NlaIII CATG 3 cut(s) 187, 194, 219
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 340
NmuCI GTSAC 2 cut(s) 52, 83
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 100
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 3 cut(s) 19, 98, 99
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 363
RsaNI GTAC 1 cut(s) 362
Sau3AI GATC 2 cut(s) 123, 255
Sau96I GGNCC 3 cut(s) 19, 98, 99
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 102
SetI ASST 9 cut(s) 16, 27, 160, 175, 265, 306, 321, 370, 391
SfaNI GCATC 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 460
SsiI CCGC 7 cut(s) 6, 110, 146, 266, 269, 288, 311
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 391
TaqI TCGA 3 cut(s) 222, 258, 297
TaqII GACCGA 1 cut(s) 82
TasI AATT 1 cut(s) 460
TatI WGTACW 1 cut(s) 361
TauI GCSGC 2 cut(s) 271, 314
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 2 cut(s) 52, 83
Tsp45I GTSAC 2 cut(s) 52, 83
TspDTI ATGAA 1 cut(s) 359
TspGWI ACGGA 1 cut(s) 283
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 460
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.