Rroxscaffold_7G00161310

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0006082
Physical Location & Seq
Reverse (-)
4091453 .. 4091818
366 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00161310.1

Sequence Viewer

Length: 366 bp
ATGTCTAGGCCATATGCTGAGCAACCTCCACCACCACCACCACCACCACAAGCCTTTGTGCTACAGGGCAGCGACGCCAGCACTTACTCCCCCCACGGCTCTATTGGTGCAGTGGTTGGTGTGCTTGTAATGGTCGTAACCCTCGCCGTAGTTGCTGTCGTAATCGGACGGCTCTGCTCCGGCAAGACTATCATGGGCTACGGCCATTTCGATATGGAGAGCTGGGCCGAGACCAAATGCTCATCTTGCATTGATGGAAGGATCAGTGTCTCACTTCCCAGGCCCAATGTGTCAACAGCAACATCACCAGCCCAACAATCTGAGCAATATGATGCTCAAACATCAGTACCTACTGCAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

121

Amino Acids

12.6

Weight (kDa)

5.47

Isoelectric Point (pI)

59.78

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CR_prot_dom_plant PF22812 8 - 60 5.1e-06 Plant cysteine-rich protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 269
AcoI YGGCCR 1 cut(s) 202
AcyI GRCGYC 1 cut(s) 75
AfaI GTAC 1 cut(s) 348
AjnI CCWGG 1 cut(s) 278
AluBI AGCT 1 cut(s) 222
AluI AGCT 1 cut(s) 222
Alw26I GTCTC 2 cut(s) 224, 274
AlwI GGATC 1 cut(s) 269
AoxI GGCC 4 cut(s) 8, 202, 225, 281
ApeKI GCWGC 1 cut(s) 69
AspS9I GGNCC 2 cut(s) 225, 282
AsuHPI GGTGA 1 cut(s) 297
BaeI ACNNNNGTAYC 2 cut(s) 330, 363
BbvI GCAGC 1 cut(s) 81
BccI CCATC 1 cut(s) 248
BceAI ACGGC 4 cut(s) 112, 131, 185, 217
BciT130I CCWGG 1 cut(s) 280
BcoDI GTCTC 2 cut(s) 224, 274
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 62
BisI GCNGC 1 cut(s) 70
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 71
Bme1390I CCNGG 1 cut(s) 280
BmgT120I GGNCC 2 cut(s) 225, 282
BmrFI CCNGG 1 cut(s) 280
BmsI GCATC 1 cut(s) 322
Bpu1102I GCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 75
BsaI GGTCTC 1 cut(s) 224
BsaJI CCNNGG 2 cut(s) 94, 278
BseBI CCWGG 1 cut(s) 280
BseDI CCNNGG 2 cut(s) 94, 278
BseMII CTCAG 2 cut(s) 9, 312
BseXI GCAGC 1 cut(s) 81
BseYI CCCAGC 1 cut(s) 222
BsgI GTGCAG 1 cut(s) 129
BshFI GGCC 4 cut(s) 10, 204, 227, 283
BsiSI CCGG 1 cut(s) 180
BsmAI GTCTC 2 cut(s) 224, 274
BsnI GGCC 4 cut(s) 10, 204, 227, 283
Bso31I GGTCTC 1 cut(s) 224
Bsp143I GATC 1 cut(s) 261
Bsp1720I GCTNAGC 1 cut(s) 18
BspANI GGCC 4 cut(s) 10, 204, 227, 283
BspCNI CTCAG 2 cut(s) 10, 313
BspPI GGATC 1 cut(s) 269
BspTNI GGTCTC 1 cut(s) 224
BssECI CCNNGG 2 cut(s) 94, 278
BssMI GATC 1 cut(s) 261
BssNI GRCGYC 1 cut(s) 75
Bst2UI CCWGG 1 cut(s) 280
BstACI GRCGYC 1 cut(s) 75
BstC8I GCNNGC 1 cut(s) 79
BstDEI CTNAG 2 cut(s) 18, 321
BstDSI CCRYGG 1 cut(s) 94
BstKTI GATC 1 cut(s) 264
BstMAI GTCTC 2 cut(s) 224, 274
BstMBI GATC 1 cut(s) 261
BstMWI GCNNNNNNNGC 3 cut(s) 78, 152, 246
BstNI CCWGG 1 cut(s) 280
BstSCI CCNGG 1 cut(s) 278
BstSFI CTRYAG 1 cut(s) 62
BstV1I GCAGC 1 cut(s) 81
BsuRI GGCC 4 cut(s) 10, 204, 227, 283
BtgI CCRYGG 1 cut(s) 94
BtsI GCAGTG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 117, 271
Cac8I GCNNGC 1 cut(s) 79
Cfr13I GGNCC 2 cut(s) 225, 282
CseI GACGC 1 cut(s) 83
Csp6I GTAC 1 cut(s) 347
CviAII CATG 1 cut(s) 193
CviQI GTAC 1 cut(s) 347
DdeI CTNAG 2 cut(s) 18, 321
DpnI GATC 1 cut(s) 263
DpnII GATC 1 cut(s) 261
EaeI YGGCCR 1 cut(s) 202
Eco31I GGTCTC 1 cut(s) 224
EcoRII CCWGG 1 cut(s) 278
FaeI CATG 1 cut(s) 196
FaiI YATR 5 cut(s) 13, 15, 194, 215, 330
FatI CATG 1 cut(s) 192
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 70
Fsp4HI GCNGC 1 cut(s) 70
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 70
GsaI CCCAGC 1 cut(s) 226
HaeIII GGCC 4 cut(s) 10, 204, 227, 283
HapII CCGG 1 cut(s) 180
HgaI GACGC 1 cut(s) 83
Hin1I GRCGYC 1 cut(s) 75
Hin1II CATG 1 cut(s) 196
HincII GTYRAC 1 cut(s) 294
HindII GTYRAC 1 cut(s) 294
HpaII CCGG 1 cut(s) 180
HphI GGTGA 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 294
Hpy188I TCNGA 2 cut(s) 167, 322
Hpy8I GTNNAC 1 cut(s) 294
Hpy99I CGWCG 1 cut(s) 77
HpyAV CCTTC 1 cut(s) 252
HpyCH4V TGCA 3 cut(s) 110, 249, 356
HpyF10VI GCNNNNNNNGC 3 cut(s) 78, 152, 246
HpyF3I CTNAG 2 cut(s) 18, 321
Hsp92I GRCGYC 1 cut(s) 75
Hsp92II CATG 1 cut(s) 196
Kzo9I GATC 1 cut(s) 261
LmnI GCTCC 1 cut(s) 182
LpnPI CCDG 7 cut(s) 50, 91, 193, 208, 265, 292, 321
Lsp1109I GCAGC 1 cut(s) 81
LweI GCATC 1 cut(s) 322
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 136
MalI GATC 1 cut(s) 263
MboI GATC 1 cut(s) 261
MnlI CCTC 2 cut(s) 36, 152
MseI TTAA 1 cut(s) 364
MspI CCGG 1 cut(s) 180
MspR9I CCNGG 1 cut(s) 280
MvaI CCWGG 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 78, 152, 246
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 261
NlaIII CATG 1 cut(s) 196
NmeAIII GCCGAG 1 cut(s) 253
PcsI WCGNNNNNNNCGW 1 cut(s) 207
PkrI GCNGC 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 278
PspFI CCCAGC 1 cut(s) 222
PspGI CCWGG 1 cut(s) 278
PspPI GGNCC 2 cut(s) 225, 282
RsaI GTAC 1 cut(s) 348
RsaNI GTAC 1 cut(s) 347
SaqAI TTAA 1 cut(s) 364
SatI GCNGC 1 cut(s) 70
Sau3AI GATC 1 cut(s) 261
Sau96I GGNCC 2 cut(s) 225, 282
ScrFI CCNGG 1 cut(s) 280
SetI ASST 3 cut(s) 28, 224, 352
SfaNI GCATC 1 cut(s) 322
SfcI CTRYAG 1 cut(s) 62
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 278
TaqI TCGA 1 cut(s) 210
Tru1I TTAA 1 cut(s) 364
Tru9I TTAA 1 cut(s) 364
TscAI CASTG 2 cut(s) 117, 271
TseI GCWGC 1 cut(s) 69
TspRI CASTG 2 cut(s) 117, 271
XcmI CCANNNNNNNNNTGG 1 cut(s) 101
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.