Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Forward (+)

8560859 .. 8561428

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g07300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

ATGGAGCAGCTGCAACCACCACCCATGGCAGTGACGCAGCAAGCCTACACTACCCATTCGGGTCACGGGTCGGTGGGACCCGTTATTGCAGTGGTTGCAGTGATCACCATTCTCGGAGTCATTGCGGTCATGATTGGTAGGCTCTGCTCCGGTCATCGGATCATGGGTCATGGGCGACACTACAACTTCGAATCATGGGTGGAGACAAAATGTTCTTCGTGTCTTGACGGCAGAATCGACCCTTCTCCACCGCCTCCACCACCGGTCACTGTCTCCGGCGAGGATGTCGCCCTGGCAGAGAGGGCAGACGCATCGCAAGAAATAAAGGAAGAAGAAGGAGAAAAAGAAGAACCCCAACAACATCAGCAGCAGCAACATCAACAACAACATCCTCCGCAGCAGGAACAACATCCACGACAACATCAGCAGCGGCAACAACATCAACAGCAACATCAACAACAACATCCTCCGCAGCAGGAACAACATCGACGACAACATCAGCAGCGGCAACAACATCAACAGCAACAGCAACAACACAATTCCCAAGCAGCAAGTAGTAGTGAGTCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

190

Amino Acids

21.47

Weight (kDa)

6.25

Isoelectric Point (pI)

83.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	6 cut(s)	125, 251, 395, 430, 470, 505
AclWI	GGATC	1 cut(s)	167
AfiI	CCNNNNNNNGG	1 cut(s)	156
AgeI	ACCGGT	1 cut(s)	262
AjnI	CCWGG	1 cut(s)	291
AluBI	AGCT	1 cut(s)	10
AluI	AGCT	1 cut(s)	10
Alw26I	GTCTC	2 cut(s)	197, 277
AlwI	GGATC	1 cut(s)	167
AsiGI	ACCGGT	1 cut(s)	262
AspS9I	GGNCC	1 cut(s)	77
AsuHPI	GGTGA	1 cut(s)	97
AsuII	TTCGAA	1 cut(s)	189
AvaII	GGWCC	1 cut(s)	77
BbvI	GCAGC	9 cut(s)	19, 49, 379, 382, 409, 439, 484, 514, 560
BceAI	ACGGC	1 cut(s)	244
BcgI	CGANNNNNNTGC	2 cut(s)	294, 328
BciT130I	CCWGG	1 cut(s)	293
BclI	TGATCA	1 cut(s)	102
BcoDI	GTCTC	2 cut(s)	197, 277
Bme1390I	CCNGG	1 cut(s)	293
Bme18I	GGWCC	1 cut(s)	77
BmgT120I	GGNCC	1 cut(s)	77
BmiI	GGNNCC	2 cut(s)	78, 79
BmrFI	CCNGG	1 cut(s)	293
BmsI	GCATC	1 cut(s)	320
Bpu14I	TTCGAA	1 cut(s)	189
BsaJI	CCNNGG	2 cut(s)	24, 291
BsaWI	WCCGGW	2 cut(s)	149, 262
Bsc4I	CCNNNNNNNGG	1 cut(s)	156
Bse118I	RCCGGY	1 cut(s)	262
Bse3DI	GCAATG	1 cut(s)	120
BseBI	CCWGG	1 cut(s)	293
BseDI	CCNNGG	2 cut(s)	24, 291
BseGI	GGATG	4 cut(s)	289, 388, 409, 463
BseLI	CCNNNNNNNGG	1 cut(s)	156
BseMI	GCAATG	1 cut(s)	120
BseXI	GCAGC	9 cut(s)	19, 49, 379, 382, 409, 439, 484, 514, 560
BshTI	ACCGGT	1 cut(s)	262
BsiSI	CCGG	3 cut(s)	150, 263, 276
BslFI	GGGAC	1 cut(s)	90
BslI	CCNNNNNNNGG	1 cut(s)	156
BsmAI	GTCTC	2 cut(s)	197, 277
BsmFI	GGGAC	1 cut(s)	90
Bsp119I	TTCGAA	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	102, 159
Bsp19I	CCATGG	1 cut(s)	24
BspACI	CCGC	6 cut(s)	125, 251, 395, 430, 470, 505
BspHI	TCATGA	1 cut(s)	129
BspLI	GGNNCC	2 cut(s)	78, 79
BspPI	GGATC	1 cut(s)	167
BspT104I	TTCGAA	1 cut(s)	189
BsrDI	GCAATG	1 cut(s)	120
BsrFI	RCCGGY	1 cut(s)	262
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	24, 291
BssMI	GATC	2 cut(s)	102, 159
BssT1I	CCWWGG	1 cut(s)	24
Bst2UI	CCWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	271
BstAPI	GCANNNNNTGC	1 cut(s)	95
BstBI	TTCGAA	1 cut(s)	189
BstC8I	GCNNGC	1 cut(s)	42
BstDSI	CCRYGG	1 cut(s)	24
BstF5I	GGATG	4 cut(s)	289, 388, 409, 463
BstKTI	GATC	2 cut(s)	105, 162
BstMAI	GTCTC	2 cut(s)	197, 277
BstMBI	GATC	2 cut(s)	102, 159
BstMWI	GCNNNNNNNGC	2 cut(s)	95, 302
BstNI	CCWGG	1 cut(s)	293
BstSCI	CCNGG	1 cut(s)	291
BstV1I	GCAGC	9 cut(s)	19, 49, 379, 382, 409, 439, 484, 514, 560
BtgI	CCRYGG	1 cut(s)	24
BtgZI	GCGATG	1 cut(s)	297
BtsCI	GGATG	4 cut(s)	289, 388, 409, 463
BtsI	GCAGTG	3 cut(s)	36, 96, 105
BtsIMutI	CAGTG	4 cut(s)	36, 96, 105, 267
Cac8I	GCNNGC	1 cut(s)	42
CciI	TCATGA	1 cut(s)	129
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	1 cut(s)	77
CseI	GACGC	2 cut(s)	43, 317
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	5 cut(s)	25, 130, 163, 170, 195
CviJI	RGCY	3 cut(s)	10, 44, 142
CviKI_1	RGCY	3 cut(s)	10, 44, 142
DpnI	GATC	2 cut(s)	104, 161
DpnII	GATC	2 cut(s)	102, 159
Eco130I	CCWWGG	1 cut(s)	24
Eco47I	GGWCC	1 cut(s)	77
EcoO109I	RGGNCCY	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	291
EcoT14I	CCWWGG	1 cut(s)	24
ErhI	CCWWGG	1 cut(s)	24
FaeI	CATG	5 cut(s)	28, 133, 166, 173, 198
FaiI	YATR	6 cut(s)	26, 131, 164, 171, 196, 568
FaqI	GGGAC	1 cut(s)	90
FatI	CATG	5 cut(s)	24, 129, 162, 169, 194
FbaI	TGATCA	1 cut(s)	102
FokI	GGATG	4 cut(s)	296, 375, 396, 450
HapII	CCGG	3 cut(s)	150, 263, 276
HgaI	GACGC	2 cut(s)	43, 317
Hin1II	CATG	5 cut(s)	28, 133, 166, 173, 198
HinfI	GANTC	4 cut(s)	117, 191, 234, 563
HpaII	CCGG	3 cut(s)	150, 263, 276
HphI	GGTGA	1 cut(s)	97
Hpy188I	TCNGA	2 cut(s)	116, 159
Hpy188III	TCNNGA	2 cut(s)	130, 224
Hpy99I	CGWCG	1 cut(s)	492
HpyAV	CCTTC	2 cut(s)	252, 329
HpyCH4III	ACNGT	1 cut(s)	271
HpyCH4V	TGCA	3 cut(s)	13, 89, 98
HpyF10VI	GCNNNNNNNGC	2 cut(s)	95, 302
Hsp92II	CATG	5 cut(s)	28, 133, 166, 173, 198
KflI	GGGWCCC	1 cut(s)	77
Ksp22I	TGATCA	1 cut(s)	102
Kzo9I	GATC	2 cut(s)	102, 159
LmnI	GCTCC	2 cut(s)	4, 152
LpnPI	CCDG	7 cut(s)	163, 276, 278, 289, 305, 386, 461
Lsp1109I	GCAGC	9 cut(s)	19, 49, 379, 382, 409, 439, 484, 514, 560
LweI	GCATC	1 cut(s)	320
MaeIII	GTNAC	3 cut(s)	31, 62, 265
MalI	GATC	2 cut(s)	104, 161
MboI	GATC	2 cut(s)	102, 159
MboII	GAAGA	4 cut(s)	207, 341, 344, 359
MluCI	AATT	1 cut(s)	538
MlyI	GAGTC	1 cut(s)	126
MnlI	CCTC	5 cut(s)	264, 274, 294, 402, 477
MslI	CAYNNNNRTG	1 cut(s)	29
MspA1I	CMGCKG	3 cut(s)	10, 430, 505
MspI	CCGG	3 cut(s)	150, 263, 276
MspR9I	CCNGG	1 cut(s)	293
MvaI	CCWGG	1 cut(s)	293
MwoI	GCNNNNNNNGC	2 cut(s)	95, 302
NcoI	CCATGG	1 cut(s)	24
NdeII	GATC	2 cut(s)	102, 159
NlaIII	CATG	5 cut(s)	28, 133, 166, 173, 198
NlaIV	GGNNCC	2 cut(s)	78, 79
NmuCI	GTSAC	3 cut(s)	31, 62, 265
NspV	TTCGAA	1 cut(s)	189
PagI	TCATGA	1 cut(s)	129
PcsI	WCGNNNNNNNCGW	1 cut(s)	234
PfeI	GAWTC	2 cut(s)	191, 234
PinAI	ACCGGT	1 cut(s)	262
PleI	GAGTC	1 cut(s)	125
PpsI	GAGTC	1 cut(s)	125
PpuMI	RGGWCCY	1 cut(s)	77
Psp5II	RGGWCCY	1 cut(s)	77
Psp6I	CCWGG	1 cut(s)	291
PspGI	CCWGG	1 cut(s)	291
PspN4I	GGNNCC	2 cut(s)	78, 79
PspPI	GGNCC	1 cut(s)	77
PspPPI	RGGWCCY	1 cut(s)	77
PvuII	CAGCTG	1 cut(s)	10
RseI	CAYNNNNRTG	1 cut(s)	29
Sau3AI	GATC	2 cut(s)	102, 159
Sau96I	GGNCC	1 cut(s)	77
SchI	GAGTC	1 cut(s)	126
ScrFI	CCNGG	1 cut(s)	293
SetI	ASST	1 cut(s)	12
SfaNI	GCATC	1 cut(s)	320
SfuI	TTCGAA	1 cut(s)	189
SinI	GGWCC	1 cut(s)	77
SmiMI	CAYNNNNRTG	1 cut(s)	29
Sse9I	AATT	1 cut(s)	538
SsiI	CCGC	6 cut(s)	125, 251, 395, 430, 470, 505
StyD4I	CCNGG	1 cut(s)	291
StyI	CCWWGG	1 cut(s)	24
TaaI	ACNGT	1 cut(s)	271
TaqI	TCGA	3 cut(s)	189, 237, 487
TasI	AATT	1 cut(s)	538
TauI	GCSGC	2 cut(s)	433, 508
TfiI	GAWTC	2 cut(s)	191, 234
TscAI	CASTG	4 cut(s)	36, 96, 105, 274
TseFI	GTSAC	3 cut(s)	31, 62, 265
Tsp45I	GTSAC	3 cut(s)	31, 62, 265
TspRI	CASTG	4 cut(s)	36, 96, 105, 274
VpaK11BI	GGWCC	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.