Rw6G040640

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006082
Physical Location & Seq
Forward (+)
64420725 .. 64421533
809 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G040640.1

Sequence Viewer

Length: 360 bp
ATGTCTAGGCCATATGCTGAGCAACCTCCACCACCACCACCACAAGCCTTTGTGCTACAGGGCAGCGACGCCAGCACTTACTCCCCCCAAGGCTCGATTGGTGCAGTGGTTGGTGTGCTTGTAATGGTCGTAATCCTCGCCGTAGTTGCTGTTATAATCGGACGGCTCTGCTCCGGCAAGACTATCATGGGTTACGGCCATTTCGATATGGAGAGCTGGGCCGAGACCAAATGCTCATCTTGCATTGATGGAAGGATCAGTGTCTCACTTCCCAGGCCCAATGTGTCAACAGCAACATCACCAGCCCAACAATCTGAGCAATATGATGCTCAAACATCAGCACCTCCTGCAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

119

Amino Acids

12.39

Weight (kDa)

5.08

Isoelectric Point (pI)

65.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 155
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 196
AcyI GRCGYC 1 cut(s) 69
AjnI CCWGG 1 cut(s) 272
AluBI AGCT 1 cut(s) 216
AluI AGCT 1 cut(s) 216
Alw26I GTCTC 2 cut(s) 218, 268
AlwI GGATC 1 cut(s) 263
AoxI GGCC 4 cut(s) 8, 196, 219, 275
ApeKI GCWGC 1 cut(s) 63
AspS9I GGNCC 2 cut(s) 219, 276
AsuHPI GGTGA 1 cut(s) 291
BbvI GCAGC 1 cut(s) 75
BccI CCATC 1 cut(s) 242
BceAI ACGGC 3 cut(s) 125, 179, 211
BciT130I CCWGG 1 cut(s) 274
BcoDI GTCTC 2 cut(s) 218, 268
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 56
BisI GCNGC 1 cut(s) 64
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 65
Bme1390I CCNGG 1 cut(s) 274
BmgT120I GGNCC 2 cut(s) 219, 276
BmrFI CCNGG 1 cut(s) 274
BmsI GCATC 1 cut(s) 316
Bpu1102I GCTNAGC 1 cut(s) 18
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 218
BsaJI CCNNGG 2 cut(s) 88, 272
BseBI CCWGG 1 cut(s) 274
BseDI CCNNGG 2 cut(s) 88, 272
BseMII CTCAG 2 cut(s) 9, 306
BseXI GCAGC 1 cut(s) 75
BseYI CCCAGC 1 cut(s) 216
BsgI GTGCAG 1 cut(s) 123
BshFI GGCC 4 cut(s) 10, 198, 221, 277
BsiSI CCGG 1 cut(s) 174
BsmAI GTCTC 2 cut(s) 218, 268
BsnI GGCC 4 cut(s) 10, 198, 221, 277
Bso31I GGTCTC 1 cut(s) 218
Bsp143I GATC 1 cut(s) 255
Bsp1720I GCTNAGC 1 cut(s) 18
BspANI GGCC 4 cut(s) 10, 198, 221, 277
BspCNI CTCAG 2 cut(s) 10, 307
BspPI GGATC 1 cut(s) 263
BspTNI GGTCTC 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 88, 272
BssMI GATC 1 cut(s) 255
BssNI GRCGYC 1 cut(s) 69
BssT1I CCWWGG 1 cut(s) 88
Bst2UI CCWGG 1 cut(s) 274
BstACI GRCGYC 1 cut(s) 69
BstAPI GCANNNNNTGC 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 73
BstDEI CTNAG 2 cut(s) 18, 315
BstKTI GATC 1 cut(s) 258
BstMAI GTCTC 2 cut(s) 218, 268
BstMBI GATC 1 cut(s) 255
BstMWI GCNNNNNNNGC 4 cut(s) 72, 146, 240, 347
BstNI CCWGG 1 cut(s) 274
BstSCI CCNGG 1 cut(s) 272
BstSFI CTRYAG 1 cut(s) 56
BstV1I GCAGC 1 cut(s) 75
BsuRI GGCC 4 cut(s) 10, 198, 221, 277
BtsI GCAGTG 1 cut(s) 111
BtsIMutI CAGTG 2 cut(s) 111, 265
Cac8I GCNNGC 1 cut(s) 73
Cfr13I GGNCC 2 cut(s) 219, 276
CseI GACGC 1 cut(s) 77
CviAII CATG 1 cut(s) 187
CviJI RGCY 9 cut(s) 10, 47, 93, 166, 198, 216, 221, 277, 305
CviKI_1 RGCY 9 cut(s) 10, 47, 93, 166, 198, 216, 221, 277, 305
DdeI CTNAG 2 cut(s) 18, 315
DpnI GATC 1 cut(s) 257
DpnII GATC 1 cut(s) 255
EaeI YGGCCR 1 cut(s) 196
Eco130I CCWWGG 1 cut(s) 88
Eco31I GGTCTC 1 cut(s) 218
EcoRII CCWGG 1 cut(s) 272
EcoT14I CCWWGG 1 cut(s) 88
ErhI CCWWGG 1 cut(s) 88
FaeI CATG 1 cut(s) 190
FaiI YATR 6 cut(s) 13, 15, 155, 188, 209, 324
FatI CATG 1 cut(s) 186
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 64
Fsp4HI GCNGC 1 cut(s) 64
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 64
GsaI CCCAGC 1 cut(s) 220
HaeIII GGCC 4 cut(s) 10, 198, 221, 277
HapII CCGG 1 cut(s) 174
HgaI GACGC 1 cut(s) 77
Hin1I GRCGYC 1 cut(s) 69
Hin1II CATG 1 cut(s) 190
HincII GTYRAC 1 cut(s) 288
HindII GTYRAC 1 cut(s) 288
HpaII CCGG 1 cut(s) 174
HphI GGTGA 1 cut(s) 291
Hpy166II GTNNAC 1 cut(s) 288
Hpy188I TCNGA 2 cut(s) 161, 316
Hpy8I GTNNAC 1 cut(s) 288
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 246
HpyCH4V TGCA 3 cut(s) 104, 243, 350
HpyF10VI GCNNNNNNNGC 4 cut(s) 72, 146, 240, 347
HpyF3I CTNAG 2 cut(s) 18, 315
Hsp92I GRCGYC 1 cut(s) 69
Hsp92II CATG 1 cut(s) 190
Kzo9I GATC 1 cut(s) 255
LmnI GCTCC 1 cut(s) 176
LpnPI CCDG 7 cut(s) 44, 85, 187, 202, 259, 286, 315
Lsp1109I GCAGC 1 cut(s) 75
LweI GCATC 1 cut(s) 316
MaeI CTAG 1 cut(s) 6
MaeIII GTNAC 1 cut(s) 191
MalI GATC 1 cut(s) 257
MboI GATC 1 cut(s) 255
MnlI CCTC 3 cut(s) 36, 146, 354
MseI TTAA 1 cut(s) 358
MspI CCGG 1 cut(s) 174
MspR9I CCNGG 1 cut(s) 274
MvaI CCWGG 1 cut(s) 274
MwoI GCNNNNNNNGC 4 cut(s) 72, 146, 240, 347
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 255
NlaIII CATG 1 cut(s) 190
NmeAIII GCCGAG 1 cut(s) 247
PcsI WCGNNNNNNNCGW 1 cut(s) 201
PkrI GCNGC 1 cut(s) 65
PsiI TTATAA 1 cut(s) 155
Psp6I CCWGG 1 cut(s) 272
PspFI CCCAGC 1 cut(s) 216
PspGI CCWGG 1 cut(s) 272
PspPI GGNCC 2 cut(s) 219, 276
SaqAI TTAA 1 cut(s) 358
SatI GCNGC 1 cut(s) 64
Sau3AI GATC 1 cut(s) 255
Sau96I GGNCC 2 cut(s) 219, 276
ScrFI CCNGG 1 cut(s) 274
SetI ASST 3 cut(s) 28, 218, 346
SfaNI GCATC 1 cut(s) 316
SfcI CTRYAG 1 cut(s) 56
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 272
StyI CCWWGG 1 cut(s) 88
TaqI TCGA 2 cut(s) 95, 204
Tru1I TTAA 1 cut(s) 358
Tru9I TTAA 1 cut(s) 358
TscAI CASTG 2 cut(s) 111, 265
TseI GCWGC 1 cut(s) 63
TspRI CASTG 2 cut(s) 111, 265
XcmI CCANNNNNNNNNTGG 1 cut(s) 95
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.