RchiOBHm_Chr6g0259071

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006082
Physical Location & Seq
Reverse (-)
14388660 .. 14389394
735 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ23230

Sequence Viewer

Length: 501 bp
ATGTCCGCTACACCTATGGACCAGCTGCAACCACCACCACCACCCGTTTATGTGACCCAACAAGCCTACACGACCCATTCGGGTCACGGCTCGGTAGGGCCCTTGATTGCGGTGCTGGCAGTGATCACCATCCTCGGAGTCATAGCGGGAATGATAGGTCGGCTTTGCTCAGGTCGTCGGGTCATGGGTCATGGACAATACTACGACTTTGAAGCATGGCTCGAGAAGAGATGCTCGTCTTGCATTGACGGTAGGATCGAACCTCCGCCTCCGCCGCCCCATATTCCGGCTACCGCCTCAGTCGAGGAGGTTCAGGCGGCCGAGCTGGTGGTTGAGAACCCACAAGAAATGAAGGAAGAAGAACAAGTACAACCTCAGCAGCAGCAAAAACAACGTCAAAATCAACAACAACAACAGCAGCAGCAGCAGCAGCAGAAGCAACAGCAGCAGCAGCGACAACAACAAGAACAGAATTCACAGGAAAGAAGTGCTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

166

Amino Acids

18.67

Weight (kDa)

5.34

Isoelectric Point (pI)

88.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 8 cut(s) 6, 110, 146, 266, 272, 275, 294, 317
AclWI GGATC 1 cut(s) 263
AcoI YGGCCR 1 cut(s) 318
AcsI RAATTY 1 cut(s) 472
AfaI GTAC 1 cut(s) 369
AfiI CCNNNNNNNGG 1 cut(s) 286
AgsI TTSAA 1 cut(s) 212
AluBI AGCT 2 cut(s) 25, 325
AluI AGCT 2 cut(s) 25, 325
Alw26I GTCTC 1 cut(s) 488
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 98, 318
ApaI GGGCCC 1 cut(s) 102
ApoI RAATTY 1 cut(s) 472
ArsI GACNNNNNNTTYG 2 cut(s) 379, 411
AspS9I GGNCC 3 cut(s) 19, 98, 99
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 351, 383
BbvCI CCTCAGC 1 cut(s) 375
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 103
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 488
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 19, 98, 99
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 169, 375
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 286
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 286
BseMII CTCAG 4 cut(s) 183, 312, 389, 483
BseRI GAGGAG 1 cut(s) 320
BseSI GKGCMC 1 cut(s) 102
BseX3I CGGCCG 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 321
BshFI GGCC 2 cut(s) 100, 320
BsiEI CGRYCG 1 cut(s) 321
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 1 cut(s) 287
BslI CCNNNNNNNGG 1 cut(s) 286
BsmAI GTCTC 1 cut(s) 488
BsnI GGCC 2 cut(s) 100, 320
BsoBI CYCGRG 1 cut(s) 221
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 123, 255
BspACI CCGC 8 cut(s) 6, 110, 146, 266, 272, 275, 294, 317
BspANI GGCC 2 cut(s) 100, 320
BspCNI CTCAG 4 cut(s) 182, 311, 388, 484
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 263
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 123, 255
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 221
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 4 cut(s) 169, 298, 375, 492
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 126, 258
BstMAI GTCTC 1 cut(s) 488
BstMBI GATC 2 cut(s) 123, 255
BstMCI CGRYCG 1 cut(s) 321
BstMWI GCNNNNNNNGC 9 cut(s) 116, 240, 274, 424, 427, 430, 436, 445, 451
BstSLI GKGCMC 1 cut(s) 102
BstZI CGGCCG 1 cut(s) 318
BsuRI GGCC 2 cut(s) 100, 320
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 117
Cfr13I GGNCC 3 cut(s) 19, 98, 99
Csp6I GTAC 1 cut(s) 368
CviAII CATG 3 cut(s) 184, 191, 216
CviJI RGCY 9 cut(s) 25, 65, 90, 100, 163, 220, 290, 320, 325
CviKI_1 RGCY 9 cut(s) 25, 65, 90, 100, 163, 220, 290, 320, 325
CviQI GTAC 1 cut(s) 368
DdeI CTNAG 4 cut(s) 169, 298, 375, 492
DpnI GATC 2 cut(s) 125, 257
DpnII GATC 2 cut(s) 123, 255
EaeI YGGCCR 1 cut(s) 318
EagI CGGCCG 1 cut(s) 318
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 2 cut(s) 255, 261
EclXI CGGCCG 1 cut(s) 318
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 19
Eco52I CGGCCG 1 cut(s) 318
Eco88I CYCGRG 1 cut(s) 221
EcoO109I RGGNCCY 2 cut(s) 98, 99
EcoRI GAATTC 1 cut(s) 472
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 3 cut(s) 187, 194, 219
FaiI YATR 7 cut(s) 17, 51, 143, 185, 192, 217, 282
FatI CATG 3 cut(s) 183, 190, 215
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 123
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 102
HaeIII GGCC 2 cut(s) 100, 320
HapII CCGG 1 cut(s) 287
Hin1II CATG 3 cut(s) 187, 194, 219
HinfI GANTC 1 cut(s) 138
HpaII CCGG 1 cut(s) 287
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 223
Hpy99I CGWCG 1 cut(s) 180
HpyAV CCTTC 1 cut(s) 346
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 394
HpyCH4V TGCA 2 cut(s) 28, 243
HpyF10VI GCNNNNNNNGC 9 cut(s) 116, 240, 274, 424, 427, 430, 436, 445, 451
HpyF3I CTNAG 4 cut(s) 169, 298, 375, 492
HpySE526I ACGT 1 cut(s) 394
Hsp92II CATG 3 cut(s) 187, 194, 219
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 255
LpnPI CCDG 7 cut(s) 35, 101, 156, 299, 300, 311, 464
LweI GCATC 1 cut(s) 221
MaeII ACGT 1 cut(s) 394
MaeIII GTNAC 2 cut(s) 52, 83
MalI GATC 2 cut(s) 125, 257
MboI GATC 2 cut(s) 123, 255
MboII GAAGA 3 cut(s) 238, 368, 371
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 472
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 7 cut(s) 143, 273, 279, 298, 301, 307, 384
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 1 cut(s) 287
MwoI GCNNNNNNNGC 9 cut(s) 116, 240, 274, 424, 427, 430, 436, 445, 451
NdeII GATC 2 cut(s) 123, 255
NlaIII CATG 3 cut(s) 187, 194, 219
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 346
NmuCI GTSAC 2 cut(s) 52, 83
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 100
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 3 cut(s) 19, 98, 99
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 369
RsaNI GTAC 1 cut(s) 368
Sau3AI GATC 2 cut(s) 123, 255
Sau96I GGNCC 3 cut(s) 19, 98, 99
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 102
SetI ASST 9 cut(s) 16, 27, 160, 175, 265, 312, 327, 376, 397
SfaNI GCATC 1 cut(s) 221
Sfr274I CTCGAG 1 cut(s) 221
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 472
SsiI CCGC 8 cut(s) 6, 110, 146, 266, 272, 275, 294, 317
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 397
TaqI TCGA 3 cut(s) 222, 258, 303
TasI AATT 1 cut(s) 472
TatI WGTACW 1 cut(s) 367
TauI GCSGC 2 cut(s) 277, 320
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 2 cut(s) 52, 83
Tsp45I GTSAC 2 cut(s) 52, 83
TspDTI ATGAA 1 cut(s) 365
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 472
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.