Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Reverse (-)

25898927 .. 25899286

Gene Structure 360 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g35030.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 360 bp

ATGTCCAGGCCATATGGTGAGCAACCTCCACCACCACCACAAGCCTTTATAATACAGGGCAGCGACGCCAGCACTTACTCCCCGCATGGCTCGATTGGTGCAGTAGTTGGTGTGCTAGTAATGGTAGTAATCCTCGCCGCAGTTGCTGTTGTAATCGGACGGCTCTGCTCCGGCAAGACTATCATGGGCTACGGCCATTACGATATGGAGAGCTGGGCCGAGACCAAATGCTCATCTTGCATTGATGGAAGGATCAGTACTGTCTCACTTCCCAGGCCCAATGTGTCAACAGCAACACCACCAGCACAACCATCTGAGCAATCTGATGCTCAAACATCAGCAACTTCTGCAGATGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

120

Amino Acids

12.28

Weight (kDa)

5.07

Isoelectric Point (pI)

53.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	50
AciI	CCGC	2 cut(s)	83, 138
AclWI	GGATC	1 cut(s)	260
AcoI	YGGCCR	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	66
AfaI	GTAC	1 cut(s)	259
AjnI	CCWGG	2 cut(s)	5, 272
AluBI	AGCT	1 cut(s)	213
AluI	AGCT	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	215, 268
AlwI	GGATC	1 cut(s)	260
AlwNI	CAGNNNCTG	1 cut(s)	146
AoxI	GGCC	4 cut(s)	8, 193, 216, 275
ApeKI	GCWGC	1 cut(s)	60
AspS9I	GGNCC	2 cut(s)	216, 276
AsuHPI	GGTGA	1 cut(s)	29
BarI	GAAGNNNNNNTAC	2 cut(s)	241, 273
BbvI	GCAGC	1 cut(s)	72
BccI	CCATC	2 cut(s)	239, 319
BceAI	ACGGC	2 cut(s)	176, 208
BciT130I	CCWGG	2 cut(s)	7, 274
BcoDI	GTCTC	2 cut(s)	215, 268
BfaI	CTAG	1 cut(s)	116
BfmI	CTRYAG	1 cut(s)	348
BisI	GCNGC	2 cut(s)	61, 138
BlsI	GCNGC	2 cut(s)	62, 139
BmcAI	AGTACT	1 cut(s)	259
Bme1390I	CCNGG	2 cut(s)	7, 274
BmgT120I	GGNCC	2 cut(s)	216, 276
BmrFI	CCNGG	2 cut(s)	7, 274
BmsI	GCATC	2 cut(s)	316, 343
BsaHI	GRCGYC	1 cut(s)	66
BsaI	GGTCTC	1 cut(s)	215
BsaJI	CCNNGG	1 cut(s)	272
BseBI	CCWGG	2 cut(s)	7, 274
BseDI	CCNNGG	1 cut(s)	272
BseMII	CTCAG	1 cut(s)	306
BseXI	GCAGC	1 cut(s)	72
BseYI	CCCAGC	1 cut(s)	213
BsgI	GTGCAG	1 cut(s)	120
BshFI	GGCC	4 cut(s)	10, 195, 218, 277
BsiSI	CCGG	1 cut(s)	171
BsmAI	GTCTC	2 cut(s)	215, 268
BsnI	GGCC	4 cut(s)	10, 195, 218, 277
Bso31I	GGTCTC	1 cut(s)	215
Bsp143I	GATC	1 cut(s)	252
BspACI	CCGC	2 cut(s)	83, 138
BspANI	GGCC	4 cut(s)	10, 195, 218, 277
BspCNI	CTCAG	1 cut(s)	307
BspMAI	CTGCAG	1 cut(s)	352
BspPI	GGATC	1 cut(s)	260
BspTNI	GGTCTC	1 cut(s)	215
BssECI	CCNNGG	1 cut(s)	272
BssMI	GATC	1 cut(s)	252
BssNI	GRCGYC	1 cut(s)	66
Bst2UI	CCWGG	2 cut(s)	7, 274
Bst4CI	ACNGT	1 cut(s)	262
BstACI	GRCGYC	1 cut(s)	66
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstC8I	GCNNGC	1 cut(s)	70
BstDEI	CTNAG	1 cut(s)	315
BstKTI	GATC	1 cut(s)	255
BstMAI	GTCTC	2 cut(s)	215, 268
BstMBI	GATC	1 cut(s)	252
BstMWI	GCNNNNNNNGC	4 cut(s)	69, 143, 237, 347
BstNI	CCWGG	2 cut(s)	7, 274
BstSCI	CCNGG	2 cut(s)	5, 272
BstSFI	CTRYAG	1 cut(s)	348
BstV1I	GCAGC	1 cut(s)	72
BsuRI	GGCC	4 cut(s)	10, 195, 218, 277
Cac8I	GCNNGC	1 cut(s)	70
CaiI	CAGNNNCTG	1 cut(s)	146
Cfr13I	GGNCC	2 cut(s)	216, 276
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	1 cut(s)	258
CviAII	CATG	2 cut(s)	86, 184
CviJI	RGCY	9 cut(s)	10, 44, 90, 163, 189, 195, 213, 218, 277
CviKI_1	RGCY	9 cut(s)	10, 44, 90, 163, 189, 195, 213, 218, 277
CviQI	GTAC	1 cut(s)	258
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	254
DpnII	GATC	1 cut(s)	252
EaeI	YGGCCR	1 cut(s)	193
Eco31I	GGTCTC	1 cut(s)	215
EcoRII	CCWGG	2 cut(s)	5, 272
EcoT22I	ATGCAT	1 cut(s)	358
FaeI	CATG	2 cut(s)	89, 187
FaiI	YATR	7 cut(s)	13, 15, 50, 87, 185, 206, 358
FatI	CATG	2 cut(s)	85, 183
FauI	CCCGC	1 cut(s)	90
FauNDI	CATATG	1 cut(s)	13
Fnu4HI	GCNGC	2 cut(s)	61, 138
Fsp4HI	GCNGC	2 cut(s)	61, 138
FspBI	CTAG	1 cut(s)	116
GluI	GCNGC	2 cut(s)	61, 138
GsaI	CCCAGC	1 cut(s)	217
HaeIII	GGCC	4 cut(s)	10, 195, 218, 277
HapII	CCGG	1 cut(s)	171
HgaI	GACGC	1 cut(s)	74
Hin1I	GRCGYC	1 cut(s)	66
Hin1II	CATG	2 cut(s)	89, 187
HincII	GTYRAC	1 cut(s)	288
HindII	GTYRAC	1 cut(s)	288
HpaII	CCGG	1 cut(s)	171
HphI	GGTGA	1 cut(s)	29
Hpy166II	GTNNAC	1 cut(s)	288
Hpy188I	TCNGA	3 cut(s)	158, 316, 325
Hpy8I	GTNNAC	1 cut(s)	288
Hpy99I	CGWCG	1 cut(s)	68
HpyAV	CCTTC	1 cut(s)	243
HpyCH4III	ACNGT	1 cut(s)	262
HpyCH4V	TGCA	4 cut(s)	101, 240, 350, 356
HpyF10VI	GCNNNNNNNGC	4 cut(s)	69, 143, 237, 347
HpyF3I	CTNAG	1 cut(s)	315
Hsp92I	GRCGYC	1 cut(s)	66
Hsp92II	CATG	2 cut(s)	89, 187
Kzo9I	GATC	1 cut(s)	252
LmnI	GCTCC	1 cut(s)	173
LpnPI	CCDG	8 cut(s)	19, 41, 82, 184, 199, 259, 286, 315
Lsp1109I	GCAGC	1 cut(s)	72
LweI	GCATC	2 cut(s)	316, 343
MaeI	CTAG	1 cut(s)	116
MalI	GATC	1 cut(s)	254
MboI	GATC	1 cut(s)	252
MnlI	CCTC	2 cut(s)	36, 143
Mph1103I	ATGCAT	1 cut(s)	358
MspI	CCGG	1 cut(s)	171
MspR9I	CCNGG	2 cut(s)	7, 274
MvaI	CCWGG	2 cut(s)	7, 274
MwoI	GCNNNNNNNGC	4 cut(s)	69, 143, 237, 347
NdeI	CATATG	1 cut(s)	13
NdeII	GATC	1 cut(s)	252
NlaIII	CATG	2 cut(s)	89, 187
NmeAIII	GCCGAG	1 cut(s)	244
NsiI	ATGCAT	1 cut(s)	358
PcsI	WCGNNNNNNNCGW	1 cut(s)	198
PkrI	GCNGC	2 cut(s)	62, 139
PsiI	TTATAA	1 cut(s)	50
Psp6I	CCWGG	2 cut(s)	5, 272
PspFI	CCCAGC	1 cut(s)	213
PspGI	CCWGG	2 cut(s)	5, 272
PspPI	GGNCC	2 cut(s)	216, 276
PstI	CTGCAG	1 cut(s)	352
PstNI	CAGNNNCTG	1 cut(s)	146
RsaI	GTAC	1 cut(s)	259
RsaNI	GTAC	1 cut(s)	258
SatI	GCNGC	2 cut(s)	61, 138
Sau3AI	GATC	1 cut(s)	252
Sau96I	GGNCC	2 cut(s)	216, 276
ScaI	AGTACT	1 cut(s)	259
ScrFI	CCNGG	2 cut(s)	7, 274
SetI	ASST	2 cut(s)	28, 215
SfaNI	GCATC	2 cut(s)	316, 343
SfcI	CTRYAG	1 cut(s)	348
SsiI	CCGC	2 cut(s)	83, 138
SspMI	CTAG	1 cut(s)	116
StyD4I	CCNGG	2 cut(s)	5, 272
TaaI	ACNGT	1 cut(s)	262
TaqI	TCGA	1 cut(s)	92
TatI	WGTACW	1 cut(s)	257
TauI	GCSGC	1 cut(s)	140
TseI	GCWGC	1 cut(s)	60
XspI	CTAG	1 cut(s)	116
ZrmI	AGTACT	1 cut(s)	259
Zsp2I	ATGCAT	1 cut(s)	358

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.