Rh6DG085000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0006082
Physical Location & Seq
Reverse (-)
9940661 .. 9941795
1135 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG085000.1

Sequence Viewer

Length: 516 bp
ATGTCCGCTACACCTATGGACCAGCTGCAACCACCACCACCACCCGTTTATGTGACCCAACAAGCCTACACGACCCATTCGGGTCACGGCTCGGTCGGGCCCGTGATTGCGGTGCTGGCAGTGATCACCATCCTCGGAGTCATAGCGGGAATGATAGGTCGGCTTTGCTCAGGTCGTCGGGTCATGGGTCATGGACAATACTACGACTTCGAAGCATGGCTCGAGAAGAGATGCTCGTCTTGCATTGACGGTAGGATCGAGCCTCCGCCTCCGCCTCCGCCTCCGCCGCCCCATATTCCGGCTACAGCCTCCGTCGAGGAGGTTCAGGCCGCCGAGCCGGTGGTTGAGAACCCACAAGAGATGAAGGAAGAAGAACAAGTACAACCTCAGCAGCAGCAAAAACAACGTCAAAATCAACAACAACAACACCAGCAGCAACAGCAGAAGCAGAAGCAACCGCAGCAGCAGCGACAACAACAAGAACAGAATTCACAGGAAAGAAGTGGTGAGACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

171

Amino Acids

19.12

Weight (kDa)

5.71

Isoelectric Point (pI)

91.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 263
AcsI RAATTY 1 cut(s) 487
AfaI GTAC 1 cut(s) 381
AfiI CCNNNNNNNGG 1 cut(s) 298
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 503
AlwI GGATC 1 cut(s) 263
Ama87I CYCGRG 1 cut(s) 221
AoxI GGCC 2 cut(s) 98, 327
ApaI GGGCCC 1 cut(s) 102
ApeKI GCWGC 7 cut(s) 25, 391, 394, 433, 460, 463, 466
ApoI RAATTY 1 cut(s) 487
ArsI GACNNNNNNTTYG 2 cut(s) 391, 423
AspS9I GGNCC 3 cut(s) 19, 98, 99
AsuHPI GGTGA 1 cut(s) 118
AsuII TTCGAA 1 cut(s) 210
AvaI CYCGRG 1 cut(s) 221
AvaII GGWCC 1 cut(s) 19
BaeGI GKGCMC 1 cut(s) 102
BanII GRGCYC 1 cut(s) 102
BarI GAAGNNNNNNTAC 2 cut(s) 363, 395
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 7 cut(s) 12, 403, 406, 445, 472, 475, 478
BccI CCATC 1 cut(s) 137
BceAI ACGGC 1 cut(s) 103
BclI TGATCA 1 cut(s) 123
BcoDI GTCTC 1 cut(s) 503
BfmI CTRYAG 1 cut(s) 303
BisI GCNGC 9 cut(s) 26, 287, 330, 392, 395, 434, 461, 464, 467
BlsI GCNGC 9 cut(s) 27, 288, 331, 393, 396, 435, 462, 465, 468
Bme18I GGWCC 1 cut(s) 19
BmeT110I CYCGRG 1 cut(s) 221
BmgT120I GGNCC 3 cut(s) 19, 98, 99
BmiI GGNNCC 1 cut(s) 100
BmsI GCATC 1 cut(s) 221
Bpu10I CCTNAGC 2 cut(s) 169, 387
Bpu14I TTCGAA 1 cut(s) 210
BsaBI GATNNNNATC 1 cut(s) 128
BsaJI CCNNGG 1 cut(s) 133
Bsc4I CCNNNNNNNGG 1 cut(s) 298
Bse118I RCCGGY 1 cut(s) 337
Bse8I GATNNNNATC 1 cut(s) 128
BseDI CCNNGG 1 cut(s) 133
BseGI GGATG 1 cut(s) 129
BseJI GATNNNNATC 1 cut(s) 128
BseLI CCNNNNNNNGG 1 cut(s) 298
BseMII CTCAG 2 cut(s) 183, 401
BseRI GAGGAG 1 cut(s) 332
BseSI GKGCMC 1 cut(s) 102
BseXI GCAGC 7 cut(s) 12, 403, 406, 445, 472, 475, 478
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 100, 329
BsiEI CGRYCG 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 221
BsiSI CCGG 2 cut(s) 299, 338
BslI CCNNNNNNNGG 1 cut(s) 298
BsmAI GTCTC 1 cut(s) 503
BsnI GGCC 2 cut(s) 100, 329
BsoBI CYCGRG 1 cut(s) 221
Bsp119I TTCGAA 1 cut(s) 210
Bsp120I GGGCCC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 102
Bsp143I GATC 2 cut(s) 123, 255
BspANI GGCC 2 cut(s) 100, 329
BspCNI CTCAG 2 cut(s) 182, 400
BspLI GGNNCC 1 cut(s) 100
BspPI GGATC 1 cut(s) 263
BspT104I TTCGAA 1 cut(s) 210
BsrFI RCCGGY 1 cut(s) 337
BssAI RCCGGY 1 cut(s) 337
BssECI CCNNGG 1 cut(s) 133
BssMI GATC 2 cut(s) 123, 255
Bst4CI ACNGT 1 cut(s) 251
Bst6I CTCTTC 1 cut(s) 221
BstBI TTCGAA 1 cut(s) 210
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 2 cut(s) 169, 387
BstF5I GGATG 1 cut(s) 129
BstKTI GATC 2 cut(s) 126, 258
BstMAI GTCTC 1 cut(s) 503
BstMBI GATC 2 cut(s) 123, 255
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 6 cut(s) 116, 240, 286, 439, 460, 466
BstSFI CTRYAG 1 cut(s) 303
BstSLI GKGCMC 1 cut(s) 102
BstV1I GCAGC 7 cut(s) 12, 403, 406, 445, 472, 475, 478
BsuRI GGCC 2 cut(s) 100, 329
BtsCI GGATG 1 cut(s) 129
BtsI GCAGTG 1 cut(s) 126
BtsIMutI CAGTG 1 cut(s) 126
Cac8I GCNNGC 1 cut(s) 117
Cfr10I RCCGGY 1 cut(s) 337
Cfr13I GGNCC 3 cut(s) 19, 98, 99
Csp6I GTAC 1 cut(s) 380
CviAII CATG 3 cut(s) 184, 191, 216
CviQI GTAC 1 cut(s) 380
DdeI CTNAG 2 cut(s) 169, 387
DpnI GATC 2 cut(s) 125, 257
DpnII GATC 2 cut(s) 123, 255
Eam1104I CTCTTC 1 cut(s) 221
EarI CTCTTC 1 cut(s) 221
EciI GGCGGA 4 cut(s) 255, 261, 267, 273
Eco24I GRGCYC 1 cut(s) 102
Eco47I GGWCC 1 cut(s) 19
Eco88I CYCGRG 1 cut(s) 221
EcoRI GAATTC 1 cut(s) 487
EcoT38I GRGCYC 1 cut(s) 102
FaeI CATG 3 cut(s) 187, 194, 219
FaiI YATR 7 cut(s) 17, 51, 143, 185, 192, 217, 294
FatI CATG 3 cut(s) 183, 190, 215
FauI CCCGC 1 cut(s) 139
FbaI TGATCA 1 cut(s) 123
Fnu4HI GCNGC 9 cut(s) 26, 287, 330, 392, 395, 434, 461, 464, 467
FokI GGATG 1 cut(s) 116
FriOI GRGCYC 1 cut(s) 102
Fsp4HI GCNGC 9 cut(s) 26, 287, 330, 392, 395, 434, 461, 464, 467
GluI GCNGC 9 cut(s) 26, 287, 330, 392, 395, 434, 461, 464, 467
HaeIII GGCC 2 cut(s) 100, 329
HapII CCGG 2 cut(s) 299, 338
Hin1II CATG 3 cut(s) 187, 194, 219
HinfI GANTC 1 cut(s) 138
HpaII CCGG 2 cut(s) 299, 338
HphI GGTGA 1 cut(s) 118
Hpy188I TCNGA 1 cut(s) 137
Hpy188III TCNNGA 1 cut(s) 223
Hpy99I CGWCG 2 cut(s) 180, 317
HpyAV CCTTC 1 cut(s) 358
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 406
HpyCH4V TGCA 2 cut(s) 28, 243
HpyF10VI GCNNNNNNNGC 6 cut(s) 116, 240, 286, 439, 460, 466
HpyF3I CTNAG 2 cut(s) 169, 387
HpySE526I ACGT 1 cut(s) 406
Hsp92II CATG 3 cut(s) 187, 194, 219
Ksp22I TGATCA 1 cut(s) 123
Kzo9I GATC 2 cut(s) 123, 255
LpnPI CCDG 8 cut(s) 35, 101, 156, 311, 312, 351, 443, 479
Lsp1109I GCAGC 7 cut(s) 12, 403, 406, 445, 472, 475, 478
LweI GCATC 1 cut(s) 221
MaeII ACGT 1 cut(s) 406
MaeIII GTNAC 2 cut(s) 52, 83
MalI GATC 2 cut(s) 125, 257
MboI GATC 2 cut(s) 123, 255
MboII GAAGA 3 cut(s) 238, 380, 383
MhlI GDGCHC 1 cut(s) 102
MluCI AATT 1 cut(s) 487
MlyI GAGTC 1 cut(s) 147
MnlI CCTC 9 cut(s) 143, 273, 279, 285, 291, 310, 313, 319, 396
MspA1I CMGCKG 1 cut(s) 25
MspI CCGG 2 cut(s) 299, 338
MwoI GCNNNNNNNGC 6 cut(s) 116, 240, 286, 439, 460, 466
NdeII GATC 2 cut(s) 123, 255
NlaIII CATG 3 cut(s) 187, 194, 219
NlaIV GGNNCC 1 cut(s) 100
NmeAIII GCCGAG 1 cut(s) 358
NmuCI GTSAC 2 cut(s) 52, 83
NspV TTCGAA 1 cut(s) 210
PaeR7I CTCGAG 1 cut(s) 221
PcsI WCGNNNNNNNCGW 1 cut(s) 255
PkrI GCNGC 9 cut(s) 27, 288, 331, 393, 396, 435, 462, 465, 468
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 100
PspOMI GGGCCC 1 cut(s) 98
PspPI GGNCC 3 cut(s) 19, 98, 99
PvuII CAGCTG 1 cut(s) 25
RsaI GTAC 1 cut(s) 381
RsaNI GTAC 1 cut(s) 380
SatI GCNGC 9 cut(s) 26, 287, 330, 392, 395, 434, 461, 464, 467
Sau3AI GATC 2 cut(s) 123, 255
Sau96I GGNCC 3 cut(s) 19, 98, 99
SchI GAGTC 1 cut(s) 147
SduI GDGCHC 1 cut(s) 102
SetI ASST 7 cut(s) 16, 27, 160, 175, 324, 388, 409
SfaNI GCATC 1 cut(s) 221
SfcI CTRYAG 1 cut(s) 303
Sfr274I CTCGAG 1 cut(s) 221
SfuI TTCGAA 1 cut(s) 210
SinI GGWCC 1 cut(s) 19
SlaI CTCGAG 1 cut(s) 221
SmlI CTYRAG 1 cut(s) 221
SmoI CTYRAG 1 cut(s) 221
Sse9I AATT 1 cut(s) 487
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 409
TaqI TCGA 4 cut(s) 210, 222, 258, 315
TaqII GACCGA 1 cut(s) 82
TasI AATT 1 cut(s) 487
TatI WGTACW 1 cut(s) 379
TauI GCSGC 2 cut(s) 289, 332
TscAI CASTG 1 cut(s) 126
TseFI GTSAC 2 cut(s) 52, 83
TseI GCWGC 7 cut(s) 25, 391, 394, 433, 460, 463, 466
Tsp45I GTSAC 2 cut(s) 52, 83
TspDTI ATGAA 1 cut(s) 377
TspGWI ACGGA 1 cut(s) 301
TspRI CASTG 1 cut(s) 126
VpaK11BI GGWCC 1 cut(s) 19
XapI RAATTY 1 cut(s) 487
XhoI CTCGAG 1 cut(s) 221
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.