Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Reverse (-)

14933961 .. 14934449

Gene Structure 489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G008830.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGACCAGCTGCAACCACCACCACCACCCGTTTATGTGACCCAACAAGCCTACAAGACCCATTCGGGTCACGGCTCGGTCGGGCCCGTGATTGCGGTGCTGGCAGTGATCACCATCCTCGGAGTCATAGCGGGAATGATAGGTCGGCTTTGCTCAGGTCGTCGGGTCATGGGTCATGGACAATACTACGACTTCGAAGCATGGCTCGAGAAGAGATGCTCGTCTTGCATTGACGGTAGGATCGAACCTCCGCCTCCGCCTCCGCCGCCCCATATTCCGGCTACCGCCTCCGTCGAGGAGGTTCAGGCGGCCGAGCTGGTGGTTGAGAACCGACAAGAGATGAAGGAAGAAGAACAAGAAAGTAGTGGTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

125

Amino Acids

13.57

Weight (kDa)

4.97

Isoelectric Point (pI)

73.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	8 cut(s)	95, 131, 251, 257, 263, 266, 285, 308
AclWI	GGATC	1 cut(s)	248
AcoI	YGGCCR	1 cut(s)	309
AfiI	CCNNNNNNNGG	1 cut(s)	277
AluBI	AGCT	2 cut(s)	10, 316
AluI	AGCT	2 cut(s)	10, 316
Alw26I	GTCTC	1 cut(s)	365
AlwI	GGATC	1 cut(s)	248
Ama87I	CYCGRG	1 cut(s)	206
AoxI	GGCC	2 cut(s)	83, 309
ApaI	GGGCCC	1 cut(s)	87
ApeKI	GCWGC	1 cut(s)	10
AspS9I	GGNCC	3 cut(s)	4, 83, 84
AsuHPI	GGTGA	1 cut(s)	103
AsuII	TTCGAA	1 cut(s)	195
AvaI	CYCGRG	1 cut(s)	206
AvaII	GGWCC	1 cut(s)	4
BaeGI	GKGCMC	1 cut(s)	87
BanII	GRGCYC	1 cut(s)	87
BccI	CCATC	1 cut(s)	122
BceAI	ACGGC	1 cut(s)	88
BclI	TGATCA	1 cut(s)	108
BcoDI	GTCTC	1 cut(s)	365
BisI	GCNGC	3 cut(s)	11, 266, 309
BlsI	GCNGC	3 cut(s)	12, 267, 310
Bme18I	GGWCC	1 cut(s)	4
BmeT110I	CYCGRG	1 cut(s)	206
BmgT120I	GGNCC	3 cut(s)	4, 83, 84
BmiI	GGNNCC	1 cut(s)	85
BmsI	GCATC	1 cut(s)	206
Bpu10I	CCTNAGC	1 cut(s)	154
Bpu14I	TTCGAA	1 cut(s)	195
BsaBI	GATNNNNATC	1 cut(s)	113
BsaJI	CCNNGG	1 cut(s)	118
Bsc4I	CCNNNNNNNGG	1 cut(s)	277
Bse8I	GATNNNNATC	1 cut(s)	113
BseDI	CCNNGG	1 cut(s)	118
BseGI	GGATG	1 cut(s)	114
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	277
BseMII	CTCAG	1 cut(s)	168
BseRI	GAGGAG	1 cut(s)	311
BseSI	GKGCMC	1 cut(s)	87
BseX3I	CGGCCG	1 cut(s)	309
Bsh1285I	CGRYCG	2 cut(s)	81, 312
BshFI	GGCC	2 cut(s)	85, 311
BsiEI	CGRYCG	2 cut(s)	81, 312
BsiHKCI	CYCGRG	1 cut(s)	206
BsiSI	CCGG	1 cut(s)	278
BslI	CCNNNNNNNGG	1 cut(s)	277
BsmAI	GTCTC	1 cut(s)	365
BsnI	GGCC	2 cut(s)	85, 311
BsoBI	CYCGRG	1 cut(s)	206
Bsp119I	TTCGAA	1 cut(s)	195
Bsp120I	GGGCCC	1 cut(s)	83
Bsp1286I	GDGCHC	1 cut(s)	87
Bsp143I	GATC	2 cut(s)	108, 240
BspACI	CCGC	8 cut(s)	95, 131, 251, 257, 263, 266, 285, 308
BspANI	GGCC	2 cut(s)	85, 311
BspCNI	CTCAG	1 cut(s)	167
BspLI	GGNNCC	1 cut(s)	85
BspPI	GGATC	1 cut(s)	248
BspT104I	TTCGAA	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	118
BssMI	GATC	2 cut(s)	108, 240
Bst4CI	ACNGT	1 cut(s)	236
Bst6I	CTCTTC	1 cut(s)	206
BstBI	TTCGAA	1 cut(s)	195
BstC8I	GCNNGC	1 cut(s)	102
BstDEI	CTNAG	1 cut(s)	154
BstF5I	GGATG	1 cut(s)	114
BstKTI	GATC	2 cut(s)	111, 243
BstMAI	GTCTC	1 cut(s)	365
BstMBI	GATC	2 cut(s)	108, 240
BstMCI	CGRYCG	2 cut(s)	81, 312
BstMWI	GCNNNNNNNGC	3 cut(s)	101, 225, 265
BstSLI	GKGCMC	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	309
BsuRI	GGCC	2 cut(s)	85, 311
BtsCI	GGATG	1 cut(s)	114
BtsI	GCAGTG	1 cut(s)	111
BtsIMutI	CAGTG	1 cut(s)	111
Cac8I	GCNNGC	1 cut(s)	102
Cfr13I	GGNCC	3 cut(s)	4, 83, 84
CviAII	CATG	3 cut(s)	169, 176, 201
CviJI	RGCY	9 cut(s)	10, 50, 75, 85, 148, 205, 281, 311, 316
CviKI_1	RGCY	9 cut(s)	10, 50, 75, 85, 148, 205, 281, 311, 316
DdeI	CTNAG	1 cut(s)	154
DpnI	GATC	2 cut(s)	110, 242
DpnII	GATC	2 cut(s)	108, 240
EaeI	YGGCCR	1 cut(s)	309
EagI	CGGCCG	1 cut(s)	309
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
EciI	GGCGGA	3 cut(s)	240, 246, 252
EclXI	CGGCCG	1 cut(s)	309
Eco24I	GRGCYC	1 cut(s)	87
Eco47I	GGWCC	1 cut(s)	4
Eco52I	CGGCCG	1 cut(s)	309
Eco88I	CYCGRG	1 cut(s)	206
EcoT38I	GRGCYC	1 cut(s)	87
FaeI	CATG	3 cut(s)	172, 179, 204
FaiI	YATR	6 cut(s)	36, 128, 170, 177, 202, 273
FatI	CATG	3 cut(s)	168, 175, 200
FauI	CCCGC	1 cut(s)	124
FbaI	TGATCA	1 cut(s)	108
Fnu4HI	GCNGC	3 cut(s)	11, 266, 309
FokI	GGATG	1 cut(s)	101
FriOI	GRGCYC	1 cut(s)	87
Fsp4HI	GCNGC	3 cut(s)	11, 266, 309
GluI	GCNGC	3 cut(s)	11, 266, 309
HaeIII	GGCC	2 cut(s)	85, 311
HapII	CCGG	1 cut(s)	278
Hin1II	CATG	3 cut(s)	172, 179, 204
HinfI	GANTC	1 cut(s)	123
HpaII	CCGG	1 cut(s)	278
HphI	GGTGA	1 cut(s)	103
Hpy188I	TCNGA	1 cut(s)	122
Hpy188III	TCNNGA	1 cut(s)	208
Hpy99I	CGWCG	2 cut(s)	165, 296
HpyAV	CCTTC	1 cut(s)	337
HpyCH4III	ACNGT	1 cut(s)	236
HpyCH4V	TGCA	2 cut(s)	13, 228
HpyF10VI	GCNNNNNNNGC	3 cut(s)	101, 225, 265
HpyF3I	CTNAG	1 cut(s)	154
Hsp92II	CATG	3 cut(s)	172, 179, 204
Ksp22I	TGATCA	1 cut(s)	108
Kzo9I	GATC	2 cut(s)	108, 240
LpnPI	CCDG	6 cut(s)	20, 86, 141, 290, 291, 302
LweI	GCATC	1 cut(s)	206
MaeIII	GTNAC	2 cut(s)	37, 68
MalI	GATC	2 cut(s)	110, 242
MboI	GATC	2 cut(s)	108, 240
MboII	GAAGA	3 cut(s)	223, 359, 362
MhlI	GDGCHC	1 cut(s)	87
MlyI	GAGTC	1 cut(s)	132
MnlI	CCTC	7 cut(s)	128, 258, 264, 270, 289, 292, 298
MspA1I	CMGCKG	1 cut(s)	10
MspI	CCGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	3 cut(s)	101, 225, 265
NdeII	GATC	2 cut(s)	108, 240
NlaIII	CATG	3 cut(s)	172, 179, 204
NlaIV	GGNNCC	1 cut(s)	85
NmeAIII	GCCGAG	1 cut(s)	337
NmuCI	GTSAC	2 cut(s)	37, 68
NspV	TTCGAA	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	206
PcsI	WCGNNNNNNNCGW	1 cut(s)	240
PkrI	GCNGC	3 cut(s)	12, 267, 310
PleI	GAGTC	1 cut(s)	131
PpsI	GAGTC	1 cut(s)	131
PspN4I	GGNNCC	1 cut(s)	85
PspOMI	GGGCCC	1 cut(s)	83
PspPI	GGNCC	3 cut(s)	4, 83, 84
PvuII	CAGCTG	1 cut(s)	10
SatI	GCNGC	3 cut(s)	11, 266, 309
Sau3AI	GATC	2 cut(s)	108, 240
Sau96I	GGNCC	3 cut(s)	4, 83, 84
SchI	GAGTC	1 cut(s)	132
SduI	GDGCHC	1 cut(s)	87
SetI	ASST	6 cut(s)	12, 145, 160, 250, 303, 318
SfaNI	GCATC	1 cut(s)	206
Sfr274I	CTCGAG	1 cut(s)	206
SfuI	TTCGAA	1 cut(s)	195
SinI	GGWCC	1 cut(s)	4
SlaI	CTCGAG	1 cut(s)	206
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
SsiI	CCGC	8 cut(s)	95, 131, 251, 257, 263, 266, 285, 308
TaaI	ACNGT	1 cut(s)	236
TaqI	TCGA	4 cut(s)	195, 207, 243, 294
TaqII	GACCGA	1 cut(s)	67
TauI	GCSGC	2 cut(s)	268, 311
TscAI	CASTG	1 cut(s)	111
TseFI	GTSAC	2 cut(s)	37, 68
TseI	GCWGC	1 cut(s)	10
Tsp45I	GTSAC	2 cut(s)	37, 68
TspDTI	ATGAA	1 cut(s)	356
TspGWI	ACGGA	1 cut(s)	280
TspRI	CASTG	1 cut(s)	111
VpaK11BI	GGWCC	1 cut(s)	4
XhoI	CTCGAG	1 cut(s)	206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.