Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006082

Physical Location & Seq

Genomic Coordinates Reverse (-)

10021012 .. 10022146

Gene Structure 1135 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG091000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGTCCGCTACACCTATGGACCAGCTGCAACCACCACCACCACCCGTTTATGTGACCCAACAAGCCTACACGACCCATTCGGGTCACGGCTCGGTCGGGCCCGTGATTGCGGTGCTGGCAGTGATCACCATCCTCGGAGTCATAGCGGGAATGATAGGTCGGCTTTGCTCAGGTCGTCGGGTCATGGGTCATGGACAATACTACGACTTCGAAGCATGGCTCGAGAAGAGATGCTCGTCTTGCATTGACGGTAGGATCGAGCCTCCGCCTCCGCCTCCGCCTCCGCCGCCCCATATTCCGGCTACAGCCTCCGTCGAGGAGGTTCAGGCCGCCGAGCCGGTGGTTGAGAACCCACAAGAGATGAAGGAAGAAGAACAAGTACAACCTCAGCAGCAGCAAAAACAACGTCAAAATCAACAACAACAACACCAGCAGCAACAGCAGAAGCAGAAGCAACCGCAGCAGCAGCGACAACAACAAGAACAGAATTCACAGGAAAGAAGTGGTGAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

171

Amino Acids

19.12

Weight (kDa)

5.71

Isoelectric Point (pI)

91.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006082)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G26520
fragaria_vesca	FvH4_2g06840 FvH4_2g35030
prunus_persica	Prupe.1G441900_v2.0.a1 Prupe.8G116500_v2.0.a1
pyrus_communis	pycom08g08950 pycom10g07300
rosa_chinensis	RchiOBHm_Chr6g0259071 RchiOBHm_Chr6g0306971
rosa_laevigata	RLG00000010750 RLG00000014559
rosa_multiflora	Rmu_sc0007920.1_g000037 Rmu_ssc0000050.1_g000102
rosa_roxburghii	Rroxscaffold_7G00161310 Rroxscaffold_7G00206300 Rroxscaffold_7G00206460
rosa_rugosa	Rorug05G0585200 Rorug06G0354700
rosa_samantha	Rh6AG101600 Rh6AG466500 Rh6BG434500 Rh6CG091000 Rh6CG481500 Rh6DG085000 Rh6DG467800
rosa_wichuraiana	Rw6G008830 Rw6G040640

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	263
AcsI	RAATTY	1 cut(s)	487
AfaI	GTAC	1 cut(s)	381
AfiI	CCNNNNNNNGG	1 cut(s)	298
AluBI	AGCT	1 cut(s)	25
AluI	AGCT	1 cut(s)	25
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	1 cut(s)	263
Ama87I	CYCGRG	1 cut(s)	221
AoxI	GGCC	2 cut(s)	98, 327
ApaI	GGGCCC	1 cut(s)	102
ApeKI	GCWGC	7 cut(s)	25, 391, 394, 433, 460, 463, 466
ApoI	RAATTY	1 cut(s)	487
ArsI	GACNNNNNNTTYG	2 cut(s)	391, 423
AspS9I	GGNCC	3 cut(s)	19, 98, 99
AsuHPI	GGTGA	1 cut(s)	118
AsuII	TTCGAA	1 cut(s)	210
AvaI	CYCGRG	1 cut(s)	221
AvaII	GGWCC	1 cut(s)	19
BaeGI	GKGCMC	1 cut(s)	102
BanII	GRGCYC	1 cut(s)	102
BarI	GAAGNNNNNNTAC	2 cut(s)	363, 395
BbvCI	CCTCAGC	1 cut(s)	387
BbvI	GCAGC	7 cut(s)	12, 403, 406, 445, 472, 475, 478
BccI	CCATC	1 cut(s)	137
BceAI	ACGGC	1 cut(s)	103
BclI	TGATCA	1 cut(s)	123
BcoDI	GTCTC	1 cut(s)	503
BfmI	CTRYAG	1 cut(s)	303
BisI	GCNGC	9 cut(s)	26, 287, 330, 392, 395, 434, 461, 464, 467
BlsI	GCNGC	9 cut(s)	27, 288, 331, 393, 396, 435, 462, 465, 468
Bme18I	GGWCC	1 cut(s)	19
BmeT110I	CYCGRG	1 cut(s)	221
BmgT120I	GGNCC	3 cut(s)	19, 98, 99
BmiI	GGNNCC	1 cut(s)	100
BmsI	GCATC	1 cut(s)	221
Bpu10I	CCTNAGC	2 cut(s)	169, 387
Bpu14I	TTCGAA	1 cut(s)	210
BsaBI	GATNNNNATC	1 cut(s)	128
BsaJI	CCNNGG	1 cut(s)	133
Bsc4I	CCNNNNNNNGG	1 cut(s)	298
Bse118I	RCCGGY	1 cut(s)	337
Bse8I	GATNNNNATC	1 cut(s)	128
BseDI	CCNNGG	1 cut(s)	133
BseGI	GGATG	1 cut(s)	129
BseJI	GATNNNNATC	1 cut(s)	128
BseLI	CCNNNNNNNGG	1 cut(s)	298
BseMII	CTCAG	2 cut(s)	183, 401
BseRI	GAGGAG	1 cut(s)	332
BseSI	GKGCMC	1 cut(s)	102
BseXI	GCAGC	7 cut(s)	12, 403, 406, 445, 472, 475, 478
Bsh1285I	CGRYCG	1 cut(s)	96
BshFI	GGCC	2 cut(s)	100, 329
BsiEI	CGRYCG	1 cut(s)	96
BsiHKCI	CYCGRG	1 cut(s)	221
BsiSI	CCGG	2 cut(s)	299, 338
BslI	CCNNNNNNNGG	1 cut(s)	298
BsmAI	GTCTC	1 cut(s)	503
BsnI	GGCC	2 cut(s)	100, 329
BsoBI	CYCGRG	1 cut(s)	221
Bsp119I	TTCGAA	1 cut(s)	210
Bsp120I	GGGCCC	1 cut(s)	98
Bsp1286I	GDGCHC	1 cut(s)	102
Bsp143I	GATC	2 cut(s)	123, 255
BspANI	GGCC	2 cut(s)	100, 329
BspCNI	CTCAG	2 cut(s)	182, 400
BspLI	GGNNCC	1 cut(s)	100
BspPI	GGATC	1 cut(s)	263
BspT104I	TTCGAA	1 cut(s)	210
BsrFI	RCCGGY	1 cut(s)	337
BssAI	RCCGGY	1 cut(s)	337
BssECI	CCNNGG	1 cut(s)	133
BssMI	GATC	2 cut(s)	123, 255
Bst4CI	ACNGT	1 cut(s)	251
Bst6I	CTCTTC	1 cut(s)	221
BstBI	TTCGAA	1 cut(s)	210
BstC8I	GCNNGC	1 cut(s)	117
BstDEI	CTNAG	2 cut(s)	169, 387
BstF5I	GGATG	1 cut(s)	129
BstKTI	GATC	2 cut(s)	126, 258
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	2 cut(s)	123, 255
BstMCI	CGRYCG	1 cut(s)	96
BstMWI	GCNNNNNNNGC	6 cut(s)	116, 240, 286, 439, 460, 466
BstSFI	CTRYAG	1 cut(s)	303
BstSLI	GKGCMC	1 cut(s)	102
BstV1I	GCAGC	7 cut(s)	12, 403, 406, 445, 472, 475, 478
BsuRI	GGCC	2 cut(s)	100, 329
BtsCI	GGATG	1 cut(s)	129
BtsI	GCAGTG	1 cut(s)	126
BtsIMutI	CAGTG	1 cut(s)	126
Cac8I	GCNNGC	1 cut(s)	117
Cfr10I	RCCGGY	1 cut(s)	337
Cfr13I	GGNCC	3 cut(s)	19, 98, 99
Csp6I	GTAC	1 cut(s)	380
CviAII	CATG	3 cut(s)	184, 191, 216
CviQI	GTAC	1 cut(s)	380
DdeI	CTNAG	2 cut(s)	169, 387
DpnI	GATC	2 cut(s)	125, 257
DpnII	GATC	2 cut(s)	123, 255
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
EciI	GGCGGA	4 cut(s)	255, 261, 267, 273
Eco24I	GRGCYC	1 cut(s)	102
Eco47I	GGWCC	1 cut(s)	19
Eco88I	CYCGRG	1 cut(s)	221
EcoRI	GAATTC	1 cut(s)	487
EcoT38I	GRGCYC	1 cut(s)	102
FaeI	CATG	3 cut(s)	187, 194, 219
FaiI	YATR	7 cut(s)	17, 51, 143, 185, 192, 217, 294
FatI	CATG	3 cut(s)	183, 190, 215
FauI	CCCGC	1 cut(s)	139
FbaI	TGATCA	1 cut(s)	123
Fnu4HI	GCNGC	9 cut(s)	26, 287, 330, 392, 395, 434, 461, 464, 467
FokI	GGATG	1 cut(s)	116
FriOI	GRGCYC	1 cut(s)	102
Fsp4HI	GCNGC	9 cut(s)	26, 287, 330, 392, 395, 434, 461, 464, 467
GluI	GCNGC	9 cut(s)	26, 287, 330, 392, 395, 434, 461, 464, 467
HaeIII	GGCC	2 cut(s)	100, 329
HapII	CCGG	2 cut(s)	299, 338
Hin1II	CATG	3 cut(s)	187, 194, 219
HinfI	GANTC	1 cut(s)	138
HpaII	CCGG	2 cut(s)	299, 338
HphI	GGTGA	1 cut(s)	118
Hpy188I	TCNGA	1 cut(s)	137
Hpy188III	TCNNGA	1 cut(s)	223
Hpy99I	CGWCG	2 cut(s)	180, 317
HpyAV	CCTTC	1 cut(s)	358
HpyCH4III	ACNGT	1 cut(s)	251
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	2 cut(s)	28, 243
HpyF10VI	GCNNNNNNNGC	6 cut(s)	116, 240, 286, 439, 460, 466
HpyF3I	CTNAG	2 cut(s)	169, 387
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	3 cut(s)	187, 194, 219
Ksp22I	TGATCA	1 cut(s)	123
Kzo9I	GATC	2 cut(s)	123, 255
LpnPI	CCDG	8 cut(s)	35, 101, 156, 311, 312, 351, 443, 479
Lsp1109I	GCAGC	7 cut(s)	12, 403, 406, 445, 472, 475, 478
LweI	GCATC	1 cut(s)	221
MaeII	ACGT	1 cut(s)	406
MaeIII	GTNAC	2 cut(s)	52, 83
MalI	GATC	2 cut(s)	125, 257
MboI	GATC	2 cut(s)	123, 255
MboII	GAAGA	3 cut(s)	238, 380, 383
MhlI	GDGCHC	1 cut(s)	102
MluCI	AATT	1 cut(s)	487
MlyI	GAGTC	1 cut(s)	147
MnlI	CCTC	9 cut(s)	143, 273, 279, 285, 291, 310, 313, 319, 396
MspA1I	CMGCKG	1 cut(s)	25
MspI	CCGG	2 cut(s)	299, 338
MwoI	GCNNNNNNNGC	6 cut(s)	116, 240, 286, 439, 460, 466
NdeII	GATC	2 cut(s)	123, 255
NlaIII	CATG	3 cut(s)	187, 194, 219
NlaIV	GGNNCC	1 cut(s)	100
NmeAIII	GCCGAG	1 cut(s)	358
NmuCI	GTSAC	2 cut(s)	52, 83
NspV	TTCGAA	1 cut(s)	210
PaeR7I	CTCGAG	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	1 cut(s)	255
PkrI	GCNGC	9 cut(s)	27, 288, 331, 393, 396, 435, 462, 465, 468
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
PspN4I	GGNNCC	1 cut(s)	100
PspOMI	GGGCCC	1 cut(s)	98
PspPI	GGNCC	3 cut(s)	19, 98, 99
PvuII	CAGCTG	1 cut(s)	25
RsaI	GTAC	1 cut(s)	381
RsaNI	GTAC	1 cut(s)	380
SatI	GCNGC	9 cut(s)	26, 287, 330, 392, 395, 434, 461, 464, 467
Sau3AI	GATC	2 cut(s)	123, 255
Sau96I	GGNCC	3 cut(s)	19, 98, 99
SchI	GAGTC	1 cut(s)	147
SduI	GDGCHC	1 cut(s)	102
SetI	ASST	7 cut(s)	16, 27, 160, 175, 324, 388, 409
SfaNI	GCATC	1 cut(s)	221
SfcI	CTRYAG	1 cut(s)	303
Sfr274I	CTCGAG	1 cut(s)	221
SfuI	TTCGAA	1 cut(s)	210
SinI	GGWCC	1 cut(s)	19
SlaI	CTCGAG	1 cut(s)	221
SmlI	CTYRAG	1 cut(s)	221
SmoI	CTYRAG	1 cut(s)	221
Sse9I	AATT	1 cut(s)	487
TaaI	ACNGT	1 cut(s)	251
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	4 cut(s)	210, 222, 258, 315
TaqII	GACCGA	1 cut(s)	82
TasI	AATT	1 cut(s)	487
TatI	WGTACW	1 cut(s)	379
TauI	GCSGC	2 cut(s)	289, 332
TscAI	CASTG	1 cut(s)	126
TseFI	GTSAC	2 cut(s)	52, 83
TseI	GCWGC	7 cut(s)	25, 391, 394, 433, 460, 463, 466
Tsp45I	GTSAC	2 cut(s)	52, 83
TspDTI	ATGAA	1 cut(s)	377
TspGWI	ACGGA	1 cut(s)	301
TspRI	CASTG	1 cut(s)	126
VpaK11BI	GGWCC	1 cut(s)	19
XapI	RAATTY	1 cut(s)	487
XhoI	CTCGAG	1 cut(s)	221

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.