Rh6BG434500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0006082
Physical Location & Seq
Reverse (-)
65457465 .. 65457827
363 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG434500.1

Sequence Viewer

Length: 363 bp
ATGTCTAGGCCATATGCTGAGCAACCTCCACCACCACCACCACCACAAGCCTTTGTGCTACAGGGCAGCGACGCCAGCACTTACTCCCCCCACGGCTCGATTGGTGCAGTGGTTGGTGTGCTTGTAATGGTCGTAATCCTCGCCGTAGTTGCTGTCGTAATCGGACGGGTCTGCTCCGGCAAGACTATCATGGGCTACGGCCATTTCGATATGGAGAGCTGGGCCGAGACCAAATGCTCATCTTGCATTGATGGAAGGATCAGTGTCTCACTTCCCAGGCCCAATGTGTCAACAGCAACATCACCAGCCCAACAATCTGAGCAATATGATGCTCAAACATCAGCACGTACTGCAAATGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

120

Amino Acids

12.54

Weight (kDa)

6.02

Isoelectric Point (pI)

59.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CR_prot_dom_plant PF22812 7 - 59 3.7e-06 Plant cysteine-rich protein domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 266
AcoI YGGCCR 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 72
AfaI GTAC 1 cut(s) 349
AjnI CCWGG 1 cut(s) 275
AluBI AGCT 1 cut(s) 219
AluI AGCT 1 cut(s) 219
Alw26I GTCTC 2 cut(s) 221, 271
AlwI GGATC 1 cut(s) 266
AoxI GGCC 4 cut(s) 8, 199, 222, 278
ApeKI GCWGC 1 cut(s) 66
AspS9I GGNCC 2 cut(s) 222, 279
AsuHPI GGTGA 1 cut(s) 294
BbvI GCAGC 1 cut(s) 78
BccI CCATC 1 cut(s) 245
BceAI ACGGC 3 cut(s) 109, 128, 214
BciT130I CCWGG 1 cut(s) 277
BcoDI GTCTC 2 cut(s) 221, 271
BfaI CTAG 1 cut(s) 6
BfmI CTRYAG 1 cut(s) 59
BisI GCNGC 1 cut(s) 67
BlpI GCTNAGC 1 cut(s) 18
BlsI GCNGC 1 cut(s) 68
Bme1390I CCNGG 1 cut(s) 277
BmgT120I GGNCC 2 cut(s) 222, 279
BmrFI CCNGG 1 cut(s) 277
BmsI GCATC 1 cut(s) 319
Bpu1102I GCTNAGC 1 cut(s) 18
BsaAI YACGTR 1 cut(s) 347
BsaHI GRCGYC 1 cut(s) 72
BsaI GGTCTC 1 cut(s) 221
BsaJI CCNNGG 2 cut(s) 91, 275
BseBI CCWGG 1 cut(s) 277
BseDI CCNNGG 2 cut(s) 91, 275
BseMII CTCAG 2 cut(s) 9, 309
BseXI GCAGC 1 cut(s) 78
BseYI CCCAGC 1 cut(s) 219
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 4 cut(s) 10, 201, 224, 280
BsiSI CCGG 1 cut(s) 177
BsmAI GTCTC 2 cut(s) 221, 271
BsnI GGCC 4 cut(s) 10, 201, 224, 280
Bso31I GGTCTC 1 cut(s) 221
Bsp143I GATC 1 cut(s) 258
Bsp1720I GCTNAGC 1 cut(s) 18
BspANI GGCC 4 cut(s) 10, 201, 224, 280
BspCNI CTCAG 2 cut(s) 10, 310
BspPI GGATC 1 cut(s) 266
BspTNI GGTCTC 1 cut(s) 221
BssECI CCNNGG 2 cut(s) 91, 275
BssMI GATC 1 cut(s) 258
BssNI GRCGYC 1 cut(s) 72
Bst2UI CCWGG 1 cut(s) 277
BstACI GRCGYC 1 cut(s) 72
BstAPI GCANNNNNTGC 1 cut(s) 350
BstBAI YACGTR 1 cut(s) 347
BstC8I GCNNGC 1 cut(s) 76
BstDEI CTNAG 2 cut(s) 18, 318
BstDSI CCRYGG 1 cut(s) 91
BstKTI GATC 1 cut(s) 261
BstMAI GTCTC 2 cut(s) 221, 271
BstMBI GATC 1 cut(s) 258
BstMWI GCNNNNNNNGC 4 cut(s) 75, 149, 243, 350
BstNI CCWGG 1 cut(s) 277
BstSCI CCNGG 1 cut(s) 275
BstSFI CTRYAG 1 cut(s) 59
BstV1I GCAGC 1 cut(s) 78
BsuRI GGCC 4 cut(s) 10, 201, 224, 280
BtgI CCRYGG 1 cut(s) 91
BtsI GCAGTG 1 cut(s) 114
BtsIMutI CAGTG 2 cut(s) 114, 268
Cac8I GCNNGC 1 cut(s) 76
Cfr13I GGNCC 2 cut(s) 222, 279
CseI GACGC 1 cut(s) 80
Csp6I GTAC 1 cut(s) 348
CviAII CATG 1 cut(s) 190
CviJI RGCY 9 cut(s) 10, 50, 96, 195, 201, 219, 224, 280, 308
CviKI_1 RGCY 9 cut(s) 10, 50, 96, 195, 201, 219, 224, 280, 308
CviQI GTAC 1 cut(s) 348
DdeI CTNAG 2 cut(s) 18, 318
DpnI GATC 1 cut(s) 260
DpnII GATC 1 cut(s) 258
EaeI YGGCCR 1 cut(s) 199
Eco31I GGTCTC 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 275
FaeI CATG 1 cut(s) 193
FaiI YATR 5 cut(s) 13, 15, 191, 212, 327
FatI CATG 1 cut(s) 189
FauNDI CATATG 1 cut(s) 13
Fnu4HI GCNGC 1 cut(s) 67
Fsp4HI GCNGC 1 cut(s) 67
FspBI CTAG 1 cut(s) 6
GluI GCNGC 1 cut(s) 67
GsaI CCCAGC 1 cut(s) 223
HaeIII GGCC 4 cut(s) 10, 201, 224, 280
HapII CCGG 1 cut(s) 177
HgaI GACGC 1 cut(s) 80
Hin1I GRCGYC 1 cut(s) 72
Hin1II CATG 1 cut(s) 193
HincII GTYRAC 1 cut(s) 291
HindII GTYRAC 1 cut(s) 291
HpaII CCGG 1 cut(s) 177
HphI GGTGA 1 cut(s) 294
Hpy166II GTNNAC 1 cut(s) 291
Hpy188I TCNGA 2 cut(s) 164, 319
Hpy8I GTNNAC 1 cut(s) 291
Hpy99I CGWCG 1 cut(s) 74
HpyAV CCTTC 1 cut(s) 249
HpyCH4IV ACGT 1 cut(s) 346
HpyCH4V TGCA 3 cut(s) 107, 246, 353
HpyF10VI GCNNNNNNNGC 4 cut(s) 75, 149, 243, 350
HpyF3I CTNAG 2 cut(s) 18, 318
HpySE526I ACGT 1 cut(s) 346
Hsp92I GRCGYC 1 cut(s) 72
Hsp92II CATG 1 cut(s) 193
Kzo9I GATC 1 cut(s) 258
LmnI GCTCC 1 cut(s) 179
LpnPI CCDG 7 cut(s) 47, 88, 190, 205, 262, 289, 318
Lsp1109I GCAGC 1 cut(s) 78
LweI GCATC 1 cut(s) 319
MaeI CTAG 1 cut(s) 6
MaeII ACGT 1 cut(s) 346
MalI GATC 1 cut(s) 260
MboI GATC 1 cut(s) 258
MnlI CCTC 2 cut(s) 36, 149
MseI TTAA 1 cut(s) 361
MspI CCGG 1 cut(s) 177
MspR9I CCNGG 1 cut(s) 277
MvaI CCWGG 1 cut(s) 277
MwoI GCNNNNNNNGC 4 cut(s) 75, 149, 243, 350
NdeI CATATG 1 cut(s) 13
NdeII GATC 1 cut(s) 258
NlaIII CATG 1 cut(s) 193
NmeAIII GCCGAG 1 cut(s) 250
PcsI WCGNNNNNNNCGW 1 cut(s) 204
PkrI GCNGC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 347
Psp6I CCWGG 1 cut(s) 275
PspFI CCCAGC 1 cut(s) 219
PspGI CCWGG 1 cut(s) 275
PspPI GGNCC 2 cut(s) 222, 279
RsaI GTAC 1 cut(s) 349
RsaNI GTAC 1 cut(s) 348
SaqAI TTAA 1 cut(s) 361
SatI GCNGC 1 cut(s) 67
Sau3AI GATC 1 cut(s) 258
Sau96I GGNCC 2 cut(s) 222, 279
ScrFI CCNGG 1 cut(s) 277
SetI ASST 3 cut(s) 28, 221, 349
SfaNI GCATC 1 cut(s) 319
SfcI CTRYAG 1 cut(s) 59
SspMI CTAG 1 cut(s) 6
StyD4I CCNGG 1 cut(s) 275
TaiI ACGT 1 cut(s) 349
TaqI TCGA 2 cut(s) 98, 207
Tru1I TTAA 1 cut(s) 361
Tru9I TTAA 1 cut(s) 361
TscAI CASTG 2 cut(s) 114, 268
TseI GCWGC 1 cut(s) 66
TspRI CASTG 2 cut(s) 114, 268
XcmI CCANNNNNNNNNTGG 1 cut(s) 98
XspI CTAG 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.