AT2G35380

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0009391
Physical Location & Seq
Forward (+)
14892495 .. 14893993
1499 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G35380.1

Sequence Viewer

Length: 1011 bp
ATGGAGATCAAGCAGAAGAAAGTATGGCTTTCTTTAATTGTGCTTTATGCAATTACGACATCAGTTTTGGGGGACTTTGGAGAACCATTACTGAAGGGTTTCTACAAAGAGAGTTGCCCATTGGCAGAGGAAATCGTGAAGCATAACATCGAAGTTGCTGTTCTCAAAGATCCTCGTATGGCGGCTTCTCTTCTTCGTCTTCAGTTCCACGATTGCTTCGTCTTGGGTTGTGATGCGTCTGTGCTCTTGGACACACATGGAGATATGTTGAGTGAGAAACAAGCAACTCCAAATCTGAACTCTTTACGTGGATTTGAAGTAATCGATTACATTAAGTACCTCCTCGAAGAAGCTTGTCCTCTAACTGTCTCATGTTCCGATATCCTTGCCTTGGCCGCTCGTGACTCAGTCTTCCTGAGAGGTGGCCCATGGTGGGAAGTTTTGCTAGGGAGAAGAGACTCATTAAAGGCAAGTTTCGCCGGAGCAAACCAATTCATTCCAGCACCAAACTCCTCTCTCGACAGCCTCATCATCAATTTCAAGCAACAAGGGCTCAACATTCAAGATCTCATCGCTCTTTCGGGTGCTCATACAATAGGTAAAGCGAGATGCGTGAGCTTCAAGCAACGCATTGTTCAACCAAACATGGAACAAACGTTCTACGTCGATGAGTTCAGAAGACACAGCACGTTCCGTCGAGTCCTAGGGTCACAATGCAAAGATTCAAGCCGAGACAACGAACTGTCTCCACTGGATATTAAGACACCAGCTTACTTCGATAACCATTATTTCATCAATCTGTTAGAAGGGAGAGGGTTGTTGATTTCGGATAACGTTCTGGTCTCAGAAGATCATGAAGGAGAGATCTTTCAGAAAGTTTGGGAATATGCAGTTAATCAAGATCTTTTCTTCATAGATTTTGTGGAATCTATGTTAAAAATGGGTAATATTAATGTTCTTACAGGTATTGAAGGTGAAATTAGGGAGAATTGTAGATTTGTCAATATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

37.98

Weight (kDa)

5.28

Isoelectric Point (pI)

49.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 290 4.5e-75 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 398
AciI CCGC 2 cut(s) 182, 396
AclI AACGTT 2 cut(s) 656, 834
AclWI GGATC 1 cut(s) 164
AcoI YGGCCR 1 cut(s) 393
AcuI CTGAAG 2 cut(s) 113, 185
AfaI GTAC 1 cut(s) 338
AfiI CCNNNNNNNGG 2 cut(s) 391, 433
AgsI TTSAA 7 cut(s) 317, 541, 563, 622, 638, 726, 971
AloI GAACNNNNNNTCC 2 cut(s) 641, 673
AluBI AGCT 3 cut(s) 353, 618, 770
AluI AGCT 3 cut(s) 353, 618, 770
Alw21I GWGCWC 2 cut(s) 246, 589
Alw26I GTCTC 5 cut(s) 373, 450, 726, 750, 847
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 393, 424
ArsI GACNNNNNNTTYG 2 cut(s) 49, 81
AseI ATTAAT 1 cut(s) 951
Asp700I GAANNNNTTC 1 cut(s) 98
AspA2I CCTAGG 1 cut(s) 703
AspS9I GGNCC 1 cut(s) 425
AsuHPI GGTGA 1 cut(s) 986
AvrII CCTAGG 1 cut(s) 703
BanII GRGCYC 1 cut(s) 555
BarI GAAGNNNNNNTAC 4 cut(s) 86, 118, 169, 201
BauI CACGAG 1 cut(s) 399
BbsI GAAGAC 3 cut(s) 191, 403, 685
Bbv12I GWGCWC 2 cut(s) 246, 589
BcgI CGANNNNNNTGC 2 cut(s) 368, 402
BcoDI GTCTC 5 cut(s) 373, 450, 726, 750, 847
BfaI CTAG 2 cut(s) 446, 704
BglII AGATCT 3 cut(s) 565, 864, 901
BisI GCNGC 2 cut(s) 183, 396
BlnI CCTAGG 1 cut(s) 703
BlsI GCNGC 2 cut(s) 184, 397
BmgT120I GGNCC 1 cut(s) 425
BmsI GCATC 2 cut(s) 223, 599
BpiI GAAGAC 3 cut(s) 191, 403, 685
Bsa29I ATCGAT 1 cut(s) 324
BsaAI YACGTR 1 cut(s) 308
BsaI GGTCTC 1 cut(s) 847
BsaJI CCNNGG 3 cut(s) 390, 428, 703
Bsc4I CCNNNNNNNGG 2 cut(s) 391, 433
Bse1I ACTGG 1 cut(s) 756
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 3 cut(s) 390, 428, 703
BseLI CCNNNNNNNGG 2 cut(s) 391, 433
BseMII CTCAG 3 cut(s) 407, 420, 858
BseNI ACTGG 1 cut(s) 756
BseRI GAGGAG 2 cut(s) 332, 502
BshFI GGCC 2 cut(s) 395, 426
BshVI ATCGAT 1 cut(s) 324
BsiHKAI GWGCWC 2 cut(s) 246, 589
BsiSI CCGG 1 cut(s) 480
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 391, 433
BsmAI GTCTC 5 cut(s) 373, 450, 726, 750, 847
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 2 cut(s) 395, 426
Bso31I GGTCTC 1 cut(s) 847
Bsp1286I GDGCHC 3 cut(s) 246, 555, 589
Bsp143I GATC 6 cut(s) 6, 169, 565, 850, 864, 901
Bsp19I CCATGG 1 cut(s) 428
BspACI CCGC 2 cut(s) 182, 396
BspANI GGCC 2 cut(s) 395, 426
BspCNI CTCAG 3 cut(s) 408, 419, 857
BspDI ATCGAT 1 cut(s) 324
BspHI TCATGA 1 cut(s) 853
BspPI GGATC 1 cut(s) 164
BspTNI GGTCTC 1 cut(s) 847
BsrBI CCGCTC 1 cut(s) 398
BsrI ACTGG 1 cut(s) 756
BssECI CCNNGG 3 cut(s) 390, 428, 703
BssMI GATC 6 cut(s) 6, 169, 565, 850, 864, 901
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 3 cut(s) 390, 428, 703
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 2 cut(s) 367, 744
Bst6I CTCTTC 2 cut(s) 195, 448
BstBAI YACGTR 1 cut(s) 308
BstDEI CTNAG 3 cut(s) 406, 416, 844
BstDSI CCRYGG 1 cut(s) 428
BstKTI GATC 6 cut(s) 9, 172, 568, 853, 867, 904
BstMAI GTCTC 5 cut(s) 373, 450, 726, 750, 847
BstMBI GATC 6 cut(s) 6, 169, 565, 850, 864, 901
BstMWI GCNNNNNNNGC 3 cut(s) 395, 476, 550
BstV2I GAAGAC 3 cut(s) 191, 403, 685
BstX2I RGATCY 4 cut(s) 169, 565, 864, 901
BstYI RGATCY 4 cut(s) 169, 565, 864, 901
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 395, 426
BsuTUI ATCGAT 1 cut(s) 324
BtgI CCRYGG 1 cut(s) 428
BtgZI GCGATG 1 cut(s) 556
BtsIMutI CAGTG 1 cut(s) 749
CciI TCATGA 1 cut(s) 853
Cfr13I GGNCC 1 cut(s) 425
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 225
Csp6I GTAC 1 cut(s) 337
CviAII CATG 5 cut(s) 257, 372, 429, 646, 854
CviQI GTAC 1 cut(s) 337
DdeI CTNAG 3 cut(s) 406, 416, 844
DpnI GATC 6 cut(s) 8, 171, 567, 852, 866, 903
DpnII GATC 6 cut(s) 6, 169, 565, 850, 864, 901
EaeI YGGCCR 1 cut(s) 393
Eam1104I CTCTTC 2 cut(s) 195, 448
EarI CTCTTC 2 cut(s) 195, 448
Eco130I CCWWGG 3 cut(s) 390, 428, 703
Eco24I GRGCYC 1 cut(s) 555
Eco31I GGTCTC 1 cut(s) 847
Eco32I GATATC 1 cut(s) 382
Eco57I CTGAAG 2 cut(s) 113, 185
EcoRV GATATC 1 cut(s) 382
EcoT14I CCWWGG 3 cut(s) 390, 428, 703
EcoT38I GRGCYC 1 cut(s) 555
ErhI CCWWGG 3 cut(s) 390, 428, 703
FaeI CATG 5 cut(s) 260, 375, 432, 649, 857
FalI AAGNNNNNCTT 2 cut(s) 12, 44
FaqI GGGAC 1 cut(s) 86
FatI CATG 5 cut(s) 256, 371, 428, 645, 853
Fnu4HI GCNGC 2 cut(s) 183, 396
FriOI GRGCYC 1 cut(s) 555
Fsp4HI GCNGC 2 cut(s) 183, 396
FspBI CTAG 2 cut(s) 446, 704
GluI GCNGC 2 cut(s) 183, 396
HaeIII GGCC 2 cut(s) 395, 426
HapII CCGG 1 cut(s) 480
HgaI GACGC 1 cut(s) 225
Hin1II CATG 5 cut(s) 260, 375, 432, 649, 857
HindIII AAGCTT 1 cut(s) 351
HinfI GANTC 5 cut(s) 404, 458, 699, 722, 926
HpaII CCGG 1 cut(s) 480
HphI GGTGA 1 cut(s) 986
Hpy188I TCNGA 7 cut(s) 297, 379, 677, 829, 847, 873, 1010
Hpy188III TCNNGA 7 cut(s) 136, 401, 415, 518, 563, 854, 899
Hpy99I CGWCG 2 cut(s) 668, 699
HpyAV CCTTC 4 cut(s) 88, 800, 851, 965
HpyCH4III ACNGT 2 cut(s) 367, 744
HpyCH4IV ACGT 5 cut(s) 307, 656, 663, 689, 834
HpyCH4V TGCA 3 cut(s) 50, 717, 890
HpyF10VI GCNNNNNNNGC 3 cut(s) 395, 476, 550
HpyF3I CTNAG 3 cut(s) 406, 416, 844
HpySE526I ACGT 5 cut(s) 307, 656, 663, 689, 834
Hsp92II CATG 5 cut(s) 260, 375, 432, 649, 857
Kzo9I GATC 6 cut(s) 6, 169, 565, 850, 864, 901
LmnI GCTCC 1 cut(s) 482
LpnPI CCDG 7 cut(s) 428, 493, 513, 737, 780, 824, 948
LweI GCATC 2 cut(s) 223, 599
MaeI CTAG 2 cut(s) 446, 704
MaeII ACGT 5 cut(s) 307, 656, 663, 689, 834
MaeIII GTNAC 2 cut(s) 401, 708
MalI GATC 6 cut(s) 8, 171, 567, 852, 866, 903
MbiI CCGCTC 1 cut(s) 398
MboI GATC 6 cut(s) 6, 169, 565, 850, 864, 901
MflI RGATCY 4 cut(s) 169, 565, 864, 901
MhlI GDGCHC 3 cut(s) 246, 555, 589
MluCI AATT 6 cut(s) 36, 51, 491, 535, 978, 988
MlyI GAGTC 3 cut(s) 398, 452, 708
MnlI CCTC 9 cut(s) 121, 183, 350, 353, 369, 413, 523, 536, 806
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 7 cut(s) 35, 333, 464, 759, 894, 935, 951
MspI CCGG 1 cut(s) 480
MwoI GCNNNNNNNGC 3 cut(s) 395, 476, 550
NcoI CCATGG 1 cut(s) 428
NdeII GATC 6 cut(s) 6, 169, 565, 850, 864, 901
NlaIII CATG 5 cut(s) 260, 375, 432, 649, 857
NmeAIII GCCGAG 1 cut(s) 755
NmuCI GTSAC 2 cut(s) 401, 708
PagI TCATGA 1 cut(s) 853
PcsI WCGNNNNNNNCGW 1 cut(s) 216
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 722, 926
PflFI GACNNNGTC 1 cut(s) 407
PkrI GCNGC 2 cut(s) 184, 397
PleI GAGTC 3 cut(s) 398, 452, 707
PpsI GAGTC 3 cut(s) 398, 452, 707
Ppu21I YACGTR 1 cut(s) 308
PshBI ATTAAT 1 cut(s) 951
Psp1406I AACGTT 2 cut(s) 656, 834
PspPI GGNCC 1 cut(s) 425
PsuI RGATCY 4 cut(s) 169, 565, 864, 901
PsyI GACNNNGTC 1 cut(s) 407
RsaI GTAC 1 cut(s) 338
RsaNI GTAC 1 cut(s) 337
SaqAI TTAA 7 cut(s) 35, 333, 464, 759, 894, 935, 951
SatI GCNGC 2 cut(s) 183, 396
Sau3AI GATC 6 cut(s) 6, 169, 565, 850, 864, 901
Sau96I GGNCC 1 cut(s) 425
SchI GAGTC 3 cut(s) 398, 452, 708
SduI GDGCHC 3 cut(s) 246, 555, 589
SfaNI GCATC 2 cut(s) 223, 599
Sse9I AATT 6 cut(s) 36, 51, 491, 535, 978, 988
SsiI CCGC 2 cut(s) 182, 396
SspI AATATT 1 cut(s) 949
SspMI CTAG 2 cut(s) 446, 704
StyI CCWWGG 3 cut(s) 390, 428, 703
TaaI ACNGT 2 cut(s) 367, 744
TaiI ACGT 5 cut(s) 310, 659, 666, 692, 837
TaqI TCGA 7 cut(s) 150, 324, 345, 519, 666, 697, 777
TasI AATT 6 cut(s) 36, 51, 491, 535, 978, 988
TauI GCSGC 2 cut(s) 185, 398
TfiI GAWTC 2 cut(s) 722, 926
Tru1I TTAA 7 cut(s) 35, 333, 464, 759, 894, 935, 951
Tru9I TTAA 7 cut(s) 35, 333, 464, 759, 894, 935, 951
TscAI CASTG 1 cut(s) 756
TseFI GTSAC 2 cut(s) 401, 708
Tsp45I GTSAC 2 cut(s) 401, 708
TspDTI ATGAA 4 cut(s) 484, 781, 870, 901
TspGWI ACGGA 1 cut(s) 683
TspRI CASTG 1 cut(s) 756
Tth111I GACNNNGTC 1 cut(s) 407
VspI ATTAAT 1 cut(s) 951
XmaJI CCTAGG 1 cut(s) 703
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 2 cut(s) 446, 704
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.