RchiOBHm_Chr7g0208661

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0009391
Physical Location & Seq
Forward (+)
26069478 .. 26070895
1418 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ18676

Sequence Viewer

Length: 1014 bp
ATGATGGAGCAGAAGGGGAGGATATTCTTGATTTTAGTAGCAATGGTTTTTCATGGCGCTGAATCTTTCAGCGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAGGATCCTCGGATGGCAGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGCTTTGGAGGCATCACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTCATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCAGTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCCACTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGGTCTATGATGTGAACTTCAGAGGACAGTATGAAATATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAAAGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCACTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTGCAAACTCTATGGTGAATATGGGAAACATCAATCCAATCACCGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

337

Amino Acids

37.9

Weight (kDa)

6.66

Isoelectric Point (pI)

39.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 46 - 295 6.1e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 868
Acc36I ACCTGC 1 cut(s) 868
AccB1I GGYRCC 1 cut(s) 482
AclWI GGATC 3 cut(s) 164, 177, 862
AcsI RAATTY 2 cut(s) 298, 508
AcuI CTGAAG 3 cut(s) 460, 604, 631
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 6 cut(s) 124, 349, 728, 729, 877, 965
AgsI TTSAA 2 cut(s) 152, 541
AjnI CCWGG 1 cut(s) 342
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 185, 255, 432, 474
AluI AGCT 4 cut(s) 185, 255, 432, 474
Alw26I GTCTC 2 cut(s) 450, 558
AlwI GGATC 3 cut(s) 164, 177, 862
AlwNI CAGNNNCTG 1 cut(s) 395
AoxI GGCC 2 cut(s) 286, 425
ApeKI GCWGC 3 cut(s) 182, 395, 917
ApoI RAATTY 2 cut(s) 298, 508
Asp700I GAANNNNTTC 1 cut(s) 908
AspLEI GCGC 1 cut(s) 59
AspS9I GGNCC 3 cut(s) 83, 287, 425
AsuHPI GGTGA 3 cut(s) 259, 949, 955
AvaII GGWCC 1 cut(s) 83
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 482
BauI CACGAG 1 cut(s) 399
BbvI GCAGC 3 cut(s) 194, 382, 904
BccI CCATC 2 cut(s) 74, 172
BciT130I CCWGG 1 cut(s) 344
BcoDI GTCTC 2 cut(s) 450, 558
BfaI CTAG 5 cut(s) 386, 429, 446, 824, 1012
BfoI RGCGCY 1 cut(s) 60
BfuAI ACCTGC 1 cut(s) 868
BisI GCNGC 3 cut(s) 183, 396, 918
BlsI GCNGC 3 cut(s) 184, 397, 919
Bme1390I CCNGG 1 cut(s) 344
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 83, 287, 425
BmiI GGNNCC 3 cut(s) 171, 289, 484
BmrFI CCNGG 1 cut(s) 344
BmsI GCATC 4 cut(s) 223, 245, 273, 422
BplI GAGNNNNNCTC 2 cut(s) 445, 477
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 173, 808
BsaWI WCCGGW 1 cut(s) 965
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 349, 728, 729, 877, 965
Bse1I ACTGG 1 cut(s) 270
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 344
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 173, 808
BseGI GGATG 3 cut(s) 183, 442, 495
BseLI CCNNNNNNNGG 6 cut(s) 124, 349, 728, 729, 877, 965
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 270
BseRI GAGGAG 1 cut(s) 435
BseXI GCAGC 3 cut(s) 194, 382, 904
BseYI CCCAGC 1 cut(s) 432
BshFI GGCC 2 cut(s) 288, 427
BshNI GGYRCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 324
BsiSI CCGG 1 cut(s) 966
BslFI GGGAC 1 cut(s) 564
BslI CCNNNNNNNGG 6 cut(s) 124, 349, 728, 729, 877, 965
BsmAI GTCTC 2 cut(s) 450, 558
BsmFI GGGAC 1 cut(s) 564
BsnI GGCC 2 cut(s) 288, 427
Bsp143I GATC 5 cut(s) 169, 325, 330, 853, 867
BspANI GGCC 2 cut(s) 288, 427
BspDI ATCGAT 1 cut(s) 324
BspHI TCATGA 2 cut(s) 208, 856
BspLI GGNNCC 3 cut(s) 171, 289, 484
BspMI ACCTGC 1 cut(s) 868
BspPI GGATC 3 cut(s) 164, 177, 862
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 1 cut(s) 270
BssECI CCNNGG 2 cut(s) 173, 808
BssMI GATC 5 cut(s) 169, 325, 330, 853, 867
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 808
Bst2BI CACGAG 1 cut(s) 399
Bst2UI CCWGG 1 cut(s) 344
Bst4CI ACNGT 3 cut(s) 367, 657, 711
Bst6I CTCTTC 2 cut(s) 123, 342
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 200, 282, 286, 468, 472
BstENI CCTNNNNNAGG 2 cut(s) 347, 875
BstF5I GGATG 3 cut(s) 183, 442, 495
BstH2I RGCGCY 1 cut(s) 60
BstHHI GCGC 1 cut(s) 59
BstKTI GATC 5 cut(s) 172, 328, 333, 856, 870
BstMAI GTCTC 2 cut(s) 450, 558
BstMBI GATC 5 cut(s) 169, 325, 330, 853, 867
BstMWI GCNNNNNNNGC 3 cut(s) 261, 395, 923
BstNI CCWGG 1 cut(s) 344
BstSCI CCNGG 1 cut(s) 342
BstV1I GCAGC 3 cut(s) 194, 382, 904
BstX2I RGATCY 2 cut(s) 169, 867
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 2 cut(s) 169, 867
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 288, 427
BsuTUI ATCGAT 1 cut(s) 324
BtgZI GCGATG 2 cut(s) 87, 246
BtsCI GGATG 3 cut(s) 183, 442, 495
BtsI GCAGTG 1 cut(s) 396
BtsIMutI CAGTG 4 cut(s) 277, 396, 484, 894
BveI ACCTGC 1 cut(s) 868
Cac8I GCNNGC 5 cut(s) 200, 282, 286, 468, 472
CaiI CAGNNNCTG 1 cut(s) 395
CciI TCATGA 2 cut(s) 208, 856
CfoI GCGC 1 cut(s) 59
Cfr13I GGNCC 3 cut(s) 83, 287, 425
ClaI ATCGAT 1 cut(s) 324
Csp6I GTAC 1 cut(s) 676
CviAII CATG 5 cut(s) 53, 209, 223, 372, 857
CviQI GTAC 1 cut(s) 676
DpnI GATC 5 cut(s) 171, 327, 332, 855, 869
DpnII GATC 5 cut(s) 169, 325, 330, 853, 867
DraI TTTAAA 1 cut(s) 615
Eam1104I CTCTTC 2 cut(s) 123, 342
EarI CTCTTC 2 cut(s) 123, 342
Eco130I CCWWGG 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 460, 604, 631
EcoNI CCTNNNNNAGG 2 cut(s) 347, 875
EcoO109I RGGNCCY 2 cut(s) 287, 425
EcoRII CCWGG 1 cut(s) 342
EcoT14I CCWWGG 1 cut(s) 808
EcoT22I ATGCAT 1 cut(s) 238
ErhI CCWWGG 1 cut(s) 808
FaeI CATG 5 cut(s) 56, 212, 226, 375, 860
FaqI GGGAC 1 cut(s) 564
FatI CATG 5 cut(s) 52, 208, 222, 371, 856
FauNDI CATATG 1 cut(s) 716
Fnu4HI GCNGC 3 cut(s) 183, 396, 918
FokI GGATG 3 cut(s) 190, 449, 482
Fsp4HI GCNGC 3 cut(s) 183, 396, 918
FspBI CTAG 5 cut(s) 386, 429, 446, 824, 1012
GlaI GCGC 1 cut(s) 58
GluI GCNGC 3 cut(s) 183, 396, 918
GsaI CCCAGC 1 cut(s) 436
HaeII RGCGCY 1 cut(s) 60
HaeIII GGCC 2 cut(s) 288, 427
HapII CCGG 1 cut(s) 966
HhaI GCGC 1 cut(s) 59
Hin1II CATG 5 cut(s) 56, 212, 226, 375, 860
Hin6I GCGC 1 cut(s) 57
HinP1I GCGC 1 cut(s) 57
HincII GTYRAC 2 cut(s) 799, 1006
HindII GTYRAC 2 cut(s) 799, 1006
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 4 cut(s) 62, 404, 458, 702
HpaII CCGG 1 cut(s) 966
HphI GGTGA 3 cut(s) 259, 949, 955
Hpy166II GTNNAC 3 cut(s) 643, 799, 1006
Hpy188I TCNGA 5 cut(s) 177, 330, 650, 698, 832
Hpy188III TCNNGA 8 cut(s) 28, 95, 209, 401, 417, 755, 857, 985
Hpy8I GTNNAC 3 cut(s) 643, 799, 1006
HpyAV CCTTC 4 cut(s) 7, 203, 703, 854
HpyCH4III ACNGT 3 cut(s) 367, 657, 711
HpyCH4V TGCA 7 cut(s) 158, 202, 236, 413, 466, 920, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 395, 923
Hsp92II CATG 5 cut(s) 56, 212, 226, 375, 860
HspAI GCGC 1 cut(s) 57
Kzo9I GATC 5 cut(s) 169, 325, 330, 853, 867
LmnI GCTCC 1 cut(s) 7
Lsp1109I GCAGC 3 cut(s) 194, 382, 904
LweI GCATC 4 cut(s) 223, 245, 273, 422
MaeI CTAG 5 cut(s) 386, 429, 446, 824, 1012
MaeIII GTNAC 1 cut(s) 844
MalI GATC 5 cut(s) 171, 327, 332, 855, 869
MboI GATC 5 cut(s) 169, 325, 330, 853, 867
MboII GAAGA 4 cut(s) 140, 359, 711, 1000
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 2 cut(s) 169, 867
MluCI AATT 5 cut(s) 298, 508, 535, 594, 991
MlyI GAGTC 1 cut(s) 452
MmeI TCCRAC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 238
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 2 cut(s) 165, 614
MslI CAYNNNNRTG 2 cut(s) 207, 792
MspI CCGG 1 cut(s) 966
MspR9I CCNGG 1 cut(s) 344
MssI GTTTAAAC 1 cut(s) 615
MunI CAATTG 1 cut(s) 594
MvaI CCWGG 1 cut(s) 344
MwoI GCNNNNNNNGC 3 cut(s) 261, 395, 923
NdeI CATATG 1 cut(s) 716
NdeII GATC 5 cut(s) 169, 325, 330, 853, 867
NlaIII CATG 5 cut(s) 56, 212, 226, 375, 860
NlaIV GGNNCC 3 cut(s) 171, 289, 484
NmuCI GTSAC 1 cut(s) 844
NsiI ATGCAT 1 cut(s) 238
PagI TCATGA 2 cut(s) 208, 856
PaqCI CACCTGC 1 cut(s) 868
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 3 cut(s) 62, 404, 702
PfoI TCCNGGA 1 cut(s) 342
PkrI GCNGC 3 cut(s) 184, 397, 919
PleI GAGTC 1 cut(s) 452
PmeI GTTTAAAC 1 cut(s) 615
PpsI GAGTC 1 cut(s) 452
Psp6I CCWGG 1 cut(s) 342
PspFI CCCAGC 1 cut(s) 432
PspGI CCWGG 1 cut(s) 342
PspN4I GGNNCC 3 cut(s) 171, 289, 484
PspPI GGNCC 3 cut(s) 83, 287, 425
PstNI CAGNNNCTG 1 cut(s) 395
PsuI RGATCY 2 cut(s) 169, 867
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 2 cut(s) 207, 792
SaqAI TTAA 2 cut(s) 165, 614
SatI GCNGC 3 cut(s) 183, 396, 918
Sau3AI GATC 5 cut(s) 169, 325, 330, 853, 867
Sau96I GGNCC 3 cut(s) 83, 287, 425
SchI GAGTC 1 cut(s) 452
ScrFI CCNGG 1 cut(s) 344
SfaNI GCATC 4 cut(s) 223, 245, 273, 422
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 207, 792
Sse9I AATT 5 cut(s) 298, 508, 535, 594, 991
SspMI CTAG 5 cut(s) 386, 429, 446, 824, 1012
StyD4I CCNGG 1 cut(s) 342
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 3 cut(s) 367, 657, 711
TaqI TCGA 2 cut(s) 324, 416
TasI AATT 5 cut(s) 298, 508, 535, 594, 991
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 3 cut(s) 62, 404, 702
Tru1I TTAA 2 cut(s) 165, 614
Tru9I TTAA 2 cut(s) 165, 614
TscAI CASTG 4 cut(s) 277, 396, 484, 901
TseFI GTSAC 1 cut(s) 844
TseI GCWGC 3 cut(s) 182, 395, 917
Tsp45I GTSAC 1 cut(s) 844
TspDTI ATGAA 5 cut(s) 41, 197, 484, 675, 873
TspRI CASTG 4 cut(s) 277, 396, 484, 901
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 2 cut(s) 347, 875
XapI RAATTY 2 cut(s) 298, 508
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 5 cut(s) 386, 429, 446, 824, 1012
Zsp2I ATGCAT 1 cut(s) 238
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.