MD06G1038800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0009391
Physical Location & Seq
Reverse (-)
4979437 .. 4982303
2867 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1038800.v1.1.491

Sequence Viewer

Length: 1248 bp
ATGCTGCTCGCAAACACCGTTACTGTCATACCAGTGTGCAAAAGTAAAACAATAGCTAGGATAACACCAAGTTACAGATATATACATCAAACATCAACGGAAAAAAAAAAGCGTATTTCTTTCTTAGATATTGAACTTAAACAGTGGTGTTTTTTTGTTCGATTTTTTGTATATTGGTCTACAGATTGTCTGCGGATGTTTGTTTGTTCTCTCTTTTTCGATCGTTTATGTATAGTTCGAACATTTGGGATTTTCTTGAGTTTAGTACTGGCAGCAGTAGTTTTGCAGGGCACTGAACCGCTGAGTGACGAAGATGGACCTCTTGTTCTTGACTACTATAGAGAACAGTGCCCTTTGGCGGAAGAGATTGTGAGCCGTAGTGTTGCGGTTGCAGTGGCTAAAGATCCTCGAATGGCTGCTTCGCTCCTTCGACTGCACTTTCATGATTGTTTCGTCATGGGGTGCGATGCATCTGTTCTTTTGGATAGCTATGGAGGCATAACAAGTGAGAAACAAGCCGGCCCCAACCGCAAGTCTTTACGAGGATTTAAGGTTGTTGATGAGATAAAGTATCTCCTGGAAGAGGCTTGTCCAGGAACAGTTTCATGTGCTGACATTCTAGCCTTGGCTGCCCGTGATGCTGTTGCACTGAGAGGCGGACCACGGTGGAATGTGTGGCTAGGCAGGAGAGACTCACTGGAAGCAAGCTTCAACGGTGCCAACCAGTTCATCCCTCCTCCGAATTCCTCTCTAGAAACTCTCATTGCCAATTTCAAACAACATGGCCTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATGGGAGAGGCACAATGTTTGAGTTTCCGGCAGAGGGTGTATGATGTGCAGCTGAGAGGAGAATATGAATTGCACGATAAATACAAGCGATATACAACCTTTCGAAGAATCTTAAGGTCCATATGCCCTGAATCGGGGAGGGACCACGAACTAGCACCGCTGGATCATCAAACACCAACCAGATTTGACAACCATTATTACATCAACTTACTCCAAGGAAAGGGTTTGCTGGGGTCTGATAATGTGTTGGTCACACAAGATGATAAAGGGGAGATAGTGAAGCTGGTGTGGGCTTACGCATCCAATGAGAAACTGTTCTTCGCTTCATTTGCAGAGTCGATGATCAAGATGGGAAATATCAATGTACTCACCGGAAGCCATGGAGAGATCAGAAAGAATTGTAGGTTTGTCAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

416

Amino Acids

46.84

Weight (kDa)

8.16

Isoelectric Point (pI)

36.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 125 - 375 5.3e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 716
AccB7I CCANNNNNTGG 1 cut(s) 829
AccI GTMKAC 1 cut(s) 179
AciI CCGC 7 cut(s) 193, 299, 359, 386, 529, 657, 986
AclWI GGATC 2 cut(s) 398, 999
AcsI RAATTY 1 cut(s) 742
AfaI GTAC 2 cut(s) 267, 1194
AfiI CCNNNNNNNGG 7 cut(s) 358, 583, 829, 862, 961, 962, 1048
AflII CTTAAG 1 cut(s) 940
AgsI TTSAA 3 cut(s) 134, 712, 775
AjnI CCWGG 2 cut(s) 576, 592
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 5 cut(s) 56, 489, 708, 880, 1111
AluI AGCT 5 cut(s) 56, 489, 708, 880, 1111
Alw26I GTCTC 2 cut(s) 684, 792
AlwI GGATC 2 cut(s) 398, 999
AoxI GGCC 2 cut(s) 520, 784
ApeKI GCWGC 5 cut(s) 4, 272, 416, 629, 877
ApoI RAATTY 1 cut(s) 742
Asp700I GAANNNNTTC 2 cut(s) 601, 1142
AspS9I GGNCC 5 cut(s) 317, 521, 659, 945, 970
AsuHPI GGTGA 1 cut(s) 1189
AsuII TTCGAA 2 cut(s) 238, 931
AvaII GGWCC 4 cut(s) 317, 659, 945, 970
BaeGI GKGCMC 2 cut(s) 293, 353
BanI GGYRCC 1 cut(s) 716
BbvI GCAGC 4 cut(s) 284, 403, 616, 889
BccI CCATC 2 cut(s) 308, 1171
BceAI ACGGC 1 cut(s) 360
BciT130I CCWGG 2 cut(s) 578, 594
BclI TGATCA 1 cut(s) 1170
BcoDI GTCTC 2 cut(s) 684, 792
BfaI CTAG 5 cut(s) 57, 620, 680, 752, 980
BfmI CTRYAG 2 cut(s) 180, 337
BfrI CTTAAG 1 cut(s) 940
BisI GCNGC 5 cut(s) 5, 273, 417, 630, 878
BlsI GCNGC 5 cut(s) 6, 274, 418, 631, 879
BmcAI AGTACT 1 cut(s) 267
Bme1390I CCNGG 2 cut(s) 578, 594
Bme18I GGWCC 4 cut(s) 317, 659, 945, 970
BmgT120I GGNCC 5 cut(s) 317, 521, 659, 945, 970
BmiI GGNNCC 3 cut(s) 523, 718, 971
BmrFI CCNGG 2 cut(s) 578, 594
BmsI GCATC 4 cut(s) 457, 479, 628, 1136
Bpu14I TTCGAA 2 cut(s) 238, 931
BpuEI CTTGAG 1 cut(s) 277
BsaJI CCNNGG 4 cut(s) 624, 662, 1042, 1207
BsaWI WCCGGW 1 cut(s) 1199
BsaXI ACNNNNNCTCC 2 cut(s) 789, 819
Bsc4I CCNNNNNNNGG 7 cut(s) 358, 583, 829, 862, 961, 962, 1048
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 4 cut(s) 32, 273, 702, 724
Bse3DI GCAATG 1 cut(s) 762
BseBI CCWGG 2 cut(s) 578, 594
BseDI CCNNGG 4 cut(s) 624, 662, 1042, 1207
BseGI GGATG 3 cut(s) 201, 729, 1127
BseLI CCNNNNNNNGG 7 cut(s) 358, 583, 829, 862, 961, 962, 1048
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 293, 641, 872
BseNI ACTGG 4 cut(s) 32, 273, 702, 724
BseRI GAGGAG 2 cut(s) 726, 900
BseSI GKGCMC 2 cut(s) 293, 353
BseXI GCAGC 4 cut(s) 284, 403, 616, 889
BseYI CCCAGC 1 cut(s) 1057
BsgI GTGCAG 2 cut(s) 419, 896
Bsh1285I CGRYCG 1 cut(s) 223
BshFI GGCC 2 cut(s) 522, 786
BshNI GGYRCC 1 cut(s) 716
BsiEI CGRYCG 1 cut(s) 223
BsiSI CCGG 3 cut(s) 519, 856, 1200
BslFI GGGAC 1 cut(s) 983
BslI CCNNNNNNNGG 7 cut(s) 358, 583, 829, 862, 961, 962, 1048
BsmAI GTCTC 2 cut(s) 684, 792
BsmFI GGGAC 1 cut(s) 983
BsnI GGCC 2 cut(s) 522, 786
Bsp119I TTCGAA 2 cut(s) 238, 931
Bsp1286I GDGCHC 2 cut(s) 293, 353
Bsp143I GATC 5 cut(s) 220, 403, 991, 1170, 1215
Bsp19I CCATGG 1 cut(s) 1207
BspACI CCGC 7 cut(s) 193, 299, 359, 386, 529, 657, 986
BspANI GGCC 2 cut(s) 522, 786
BspCNI CTCAG 3 cut(s) 294, 642, 873
BspHI TCATGA 1 cut(s) 442
BspLI GGNNCC 3 cut(s) 523, 718, 971
BspPI GGATC 2 cut(s) 398, 999
BspT104I TTCGAA 2 cut(s) 238, 931
BspT107I GGYRCC 1 cut(s) 716
BspTI CTTAAG 1 cut(s) 940
BsrDI GCAATG 1 cut(s) 762
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 4 cut(s) 32, 273, 702, 724
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 4 cut(s) 624, 662, 1042, 1207
BssMI GATC 5 cut(s) 220, 403, 991, 1170, 1215
BssT1I CCWWGG 3 cut(s) 624, 1042, 1207
Bst2UI CCWGG 2 cut(s) 578, 594
Bst4CI ACNGT 8 cut(s) 19, 25, 144, 348, 601, 666, 716, 1143
Bst6I CTCTTC 2 cut(s) 357, 576
BstAFI CTTAAG 1 cut(s) 940
BstBI TTCGAA 2 cut(s) 238, 931
BstC8I GCNNGC 3 cut(s) 9, 520, 706
BstDEI CTNAG 4 cut(s) 124, 302, 650, 881
BstDSI CCRYGG 2 cut(s) 662, 1207
BstENI CCTNNNNNAGG 1 cut(s) 581
BstF5I GGATG 3 cut(s) 201, 729, 1127
BstKTI GATC 5 cut(s) 223, 406, 994, 1173, 1218
BstMAI GTCTC 2 cut(s) 684, 792
BstMBI GATC 5 cut(s) 220, 403, 991, 1170, 1215
BstMCI CGRYCG 1 cut(s) 223
BstMWI GCNNNNNNNGC 5 cut(s) 495, 528, 629, 638, 1157
BstNI CCWGG 2 cut(s) 578, 594
BstSCI CCNGG 2 cut(s) 576, 592
BstSFI CTRYAG 2 cut(s) 180, 337
BstSLI GKGCMC 2 cut(s) 293, 353
BstV1I GCAGC 4 cut(s) 284, 403, 616, 889
BstX2I RGATCY 1 cut(s) 403
BstYI RGATCY 1 cut(s) 403
BsuRI GGCC 2 cut(s) 522, 786
BtgI CCRYGG 2 cut(s) 662, 1207
BtgZI GCGATG 1 cut(s) 480
BtsCI GGATG 3 cut(s) 201, 729, 1127
BtsI GCAGTG 1 cut(s) 399
BtsIMutI CAGTG 7 cut(s) 39, 149, 291, 353, 399, 647, 695
Cac8I GCNNGC 3 cut(s) 9, 520, 706
CciI TCATGA 1 cut(s) 442
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 5 cut(s) 317, 521, 659, 945, 970
Csp6I GTAC 2 cut(s) 266, 1193
CviAII CATG 5 cut(s) 443, 457, 606, 782, 1208
CviQI GTAC 2 cut(s) 266, 1193
DdeI CTNAG 4 cut(s) 124, 302, 650, 881
DpnI GATC 5 cut(s) 222, 405, 993, 1172, 1217
DpnII GATC 5 cut(s) 220, 403, 991, 1170, 1215
Eam1104I CTCTTC 2 cut(s) 357, 576
EarI CTCTTC 2 cut(s) 357, 576
EciI GGCGGA 2 cut(s) 374, 672
Eco130I CCWWGG 3 cut(s) 624, 1042, 1207
Eco47I GGWCC 4 cut(s) 317, 659, 945, 970
EcoNI CCTNNNNNAGG 1 cut(s) 581
EcoRI GAATTC 1 cut(s) 742
EcoRII CCWGG 2 cut(s) 576, 592
EcoT14I CCWWGG 3 cut(s) 624, 1042, 1207
EcoT22I ATGCAT 1 cut(s) 472
ErhI CCWWGG 3 cut(s) 624, 1042, 1207
FaeI CATG 5 cut(s) 446, 460, 609, 785, 1211
FaqI GGGAC 1 cut(s) 983
FatI CATG 5 cut(s) 442, 456, 605, 781, 1207
FauNDI CATATG 1 cut(s) 950
FbaI TGATCA 1 cut(s) 1170
FblI GTMKAC 1 cut(s) 179
Fnu4HI GCNGC 5 cut(s) 5, 273, 417, 630, 878
FokI GGATG 3 cut(s) 208, 716, 1114
Fsp4HI GCNGC 5 cut(s) 5, 273, 417, 630, 878
FspBI CTAG 5 cut(s) 57, 620, 680, 752, 980
GluI GCNGC 5 cut(s) 5, 273, 417, 630, 878
GsaI CCCAGC 1 cut(s) 1061
HaeIII GGCC 2 cut(s) 522, 786
HapII CCGG 3 cut(s) 519, 856, 1200
Hin1II CATG 5 cut(s) 446, 460, 609, 785, 1211
HincII GTYRAC 1 cut(s) 1240
HindII GTYRAC 1 cut(s) 1240
HindIII AAGCTT 1 cut(s) 706
HinfI GANTC 4 cut(s) 692, 936, 959, 1163
HpaII CCGG 3 cut(s) 519, 856, 1200
HphI GGTGA 1 cut(s) 1189
Hpy166II GTNNAC 2 cut(s) 180, 1240
Hpy188I TCNGA 3 cut(s) 741, 1066, 1220
Hpy188III TCNNGA 5 cut(s) 256, 329, 443, 752, 1174
Hpy8I GTNNAC 2 cut(s) 180, 1240
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 8 cut(s) 19, 25, 144, 348, 601, 666, 716, 1143
HpyCH4V TGCA 9 cut(s) 39, 286, 392, 436, 470, 647, 877, 901, 1160
HpyF10VI GCNNNNNNNGC 5 cut(s) 495, 528, 629, 638, 1157
HpyF3I CTNAG 4 cut(s) 124, 302, 650, 881
Hsp92II CATG 5 cut(s) 446, 460, 609, 785, 1211
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Ksp22I TGATCA 1 cut(s) 1170
Kzo9I GATC 5 cut(s) 220, 403, 991, 1170, 1215
LmnI GCTCC 1 cut(s) 429
Lsp1109I GCAGC 4 cut(s) 284, 403, 616, 889
LweI GCATC 4 cut(s) 457, 479, 628, 1136
MaeI CTAG 5 cut(s) 57, 620, 680, 752, 980
MaeIII GTNAC 4 cut(s) 19, 71, 305, 1078
MalI GATC 5 cut(s) 222, 405, 993, 1172, 1217
MboI GATC 5 cut(s) 220, 403, 991, 1170, 1215
MboII GAAGA 5 cut(s) 323, 374, 593, 945, 1138
MflI RGATCY 1 cut(s) 403
MhlI GDGCHC 2 cut(s) 293, 353
MluCI AATT 4 cut(s) 742, 769, 896, 1225
MlyI GAGTC 2 cut(s) 686, 1172
Mph1103I ATGCAT 1 cut(s) 472
MroNI GCCGGC 1 cut(s) 518
MroXI GAANNNNTTC 2 cut(s) 601, 1142
MseI TTAA 3 cut(s) 138, 549, 941
MslI CAYNNNNRTG 2 cut(s) 32, 441
MspA1I CMGCKG 3 cut(s) 301, 880, 988
MspCI CTTAAG 1 cut(s) 940
MspI CCGG 3 cut(s) 519, 856, 1200
MspR9I CCNGG 2 cut(s) 578, 594
MvaI CCWGG 2 cut(s) 578, 594
MwoI GCNNNNNNNGC 5 cut(s) 495, 528, 629, 638, 1157
NaeI GCCGGC 1 cut(s) 520
NcoI CCATGG 1 cut(s) 1207
NdeI CATATG 1 cut(s) 950
NdeII GATC 5 cut(s) 220, 403, 991, 1170, 1215
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 5 cut(s) 446, 460, 609, 785, 1211
NlaIV GGNNCC 3 cut(s) 523, 718, 971
NmuCI GTSAC 2 cut(s) 305, 1078
NsiI ATGCAT 1 cut(s) 472
NspV TTCGAA 2 cut(s) 238, 931
PagI TCATGA 1 cut(s) 442
PcsI WCGNNNNNNNCGW 1 cut(s) 15
PdiI GCCGGC 1 cut(s) 520
PdmI GAANNNNTTC 2 cut(s) 601, 1142
PfeI GAWTC 2 cut(s) 936, 959
PflMI CCANNNNNTGG 1 cut(s) 829
PfoI TCCNGGA 2 cut(s) 576, 592
PkrI GCNGC 5 cut(s) 6, 274, 418, 631, 879
Ple19I CGATCG 1 cut(s) 223
PleI GAGTC 2 cut(s) 686, 1171
PpsI GAGTC 2 cut(s) 686, 1171
Psp6I CCWGG 2 cut(s) 576, 592
PspFI CCCAGC 1 cut(s) 1057
PspGI CCWGG 2 cut(s) 576, 592
PspN4I GGNNCC 3 cut(s) 523, 718, 971
PspPI GGNCC 5 cut(s) 317, 521, 659, 945, 970
PsuI RGATCY 1 cut(s) 403
PvuI CGATCG 1 cut(s) 223
PvuII CAGCTG 1 cut(s) 880
RsaI GTAC 2 cut(s) 267, 1194
RsaNI GTAC 2 cut(s) 266, 1193
RseI CAYNNNNRTG 2 cut(s) 32, 441
SaqAI TTAA 3 cut(s) 138, 549, 941
SatI GCNGC 5 cut(s) 5, 273, 417, 630, 878
Sau3AI GATC 5 cut(s) 220, 403, 991, 1170, 1215
Sau96I GGNCC 5 cut(s) 317, 521, 659, 945, 970
ScaI AGTACT 1 cut(s) 267
SchI GAGTC 2 cut(s) 686, 1172
ScrFI CCNGG 2 cut(s) 578, 594
SduI GDGCHC 2 cut(s) 293, 353
SfaNI GCATC 4 cut(s) 457, 479, 628, 1136
SfcI CTRYAG 2 cut(s) 180, 337
SfuI TTCGAA 2 cut(s) 238, 931
SinI GGWCC 4 cut(s) 317, 659, 945, 970
SmiMI CAYNNNNRTG 2 cut(s) 32, 441
SmlI CTYRAG 2 cut(s) 256, 940
SmoI CTYRAG 2 cut(s) 256, 940
Sse9I AATT 4 cut(s) 742, 769, 896, 1225
SsiI CCGC 7 cut(s) 193, 299, 359, 386, 529, 657, 986
SspMI CTAG 5 cut(s) 57, 620, 680, 752, 980
StyD4I CCNGG 2 cut(s) 576, 592
StyI CCWWGG 3 cut(s) 624, 1042, 1207
TaaI ACNGT 8 cut(s) 19, 25, 144, 348, 601, 666, 716, 1143
TaqI TCGA 7 cut(s) 160, 219, 238, 409, 430, 931, 1166
TasI AATT 4 cut(s) 742, 769, 896, 1225
TatI WGTACW 2 cut(s) 265, 1192
TfiI GAWTC 2 cut(s) 936, 959
Tru1I TTAA 3 cut(s) 138, 549, 941
Tru9I TTAA 3 cut(s) 138, 549, 941
TscAI CASTG 7 cut(s) 39, 149, 298, 353, 399, 654, 702
TseFI GTSAC 2 cut(s) 305, 1078
TseI GCWGC 5 cut(s) 4, 272, 416, 629, 877
Tsp45I GTSAC 2 cut(s) 305, 1078
TspDTI ATGAA 5 cut(s) 431, 594, 718, 909, 1143
TspGWI ACGGA 1 cut(s) 113
TspRI CASTG 7 cut(s) 39, 149, 298, 353, 399, 654, 702
Van91I CCANNNNNTGG 1 cut(s) 829
Vha464I CTTAAG 1 cut(s) 940
VpaK11BI GGWCC 4 cut(s) 317, 659, 945, 970
XagI CCTNNNNNAGG 1 cut(s) 581
XapI RAATTY 1 cut(s) 742
XbaI TCTAGA 1 cut(s) 751
XmiI GTMKAC 1 cut(s) 179
XmnI GAANNNNTTC 2 cut(s) 601, 1142
XspI CTAG 5 cut(s) 57, 620, 680, 752, 980
ZrmI AGTACT 1 cut(s) 267
Zsp2I ATGCAT 1 cut(s) 472
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.