Rh7AG240300

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0009391
Physical Location & Seq
Forward (+)
23538876 .. 23540251
1376 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG240300.1

Sequence Viewer

Length: 780 bp
ATGGTTTTTCATGGCGCTGAATCTTTCAGCGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAGGATCCTCGGATGGCAGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCCACTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGGTCTATGATGTGAACTTCAGAGGACAGTATGAAATATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAAAGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCACTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTGCAAACTCTATGGTGAATATGGGAAACATCAATCCAATCACCGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

259

Amino Acids

29.6

Weight (kDa)

8.23

Isoelectric Point (pI)

37.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 62 - 217 2e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 634
Acc36I ACCTGC 1 cut(s) 634
AccB1I GGYRCC 1 cut(s) 248
AclWI GGATC 3 cut(s) 122, 135, 628
AcsI RAATTY 1 cut(s) 274
AcuI CTGAAG 3 cut(s) 226, 370, 397
AfaI GTAC 1 cut(s) 443
AfiI CCNNNNNNNGG 5 cut(s) 82, 494, 495, 643, 731
AgsI TTSAA 2 cut(s) 110, 307
AloI GAACNNNNNNTCC 2 cut(s) 33, 65
AluBI AGCT 3 cut(s) 143, 198, 240
AluI AGCT 3 cut(s) 143, 198, 240
Alw26I GTCTC 2 cut(s) 216, 324
AlwI GGATC 3 cut(s) 122, 135, 628
AoxI GGCC 1 cut(s) 191
ApeKI GCWGC 2 cut(s) 140, 683
ApoI RAATTY 1 cut(s) 274
Asp700I GAANNNNTTC 1 cut(s) 674
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 2 cut(s) 41, 191
AsuHPI GGTGA 2 cut(s) 715, 721
AvaII GGWCC 1 cut(s) 41
BamHI GGATCC 1 cut(s) 127
BanI GGYRCC 1 cut(s) 248
BbvI GCAGC 2 cut(s) 152, 670
BccI CCATC 2 cut(s) 32, 130
BcoDI GTCTC 2 cut(s) 216, 324
BfaI CTAG 4 cut(s) 195, 212, 590, 778
BfoI RGCGCY 1 cut(s) 18
BfuAI ACCTGC 1 cut(s) 634
BisI GCNGC 2 cut(s) 141, 684
BlsI GCNGC 2 cut(s) 142, 685
Bme18I GGWCC 1 cut(s) 41
BmgT120I GGNCC 2 cut(s) 41, 191
BmiI GGNNCC 2 cut(s) 129, 250
BplI GAGNNNNNCTC 2 cut(s) 211, 243
BsaJI CCNNGG 2 cut(s) 131, 574
BsaWI WCCGGW 1 cut(s) 731
BsaXI ACNNNNNCTCC 2 cut(s) 321, 351
Bsc4I CCNNNNNNNGG 5 cut(s) 82, 494, 495, 643, 731
BseDI CCNNGG 2 cut(s) 131, 574
BseGI GGATG 3 cut(s) 141, 208, 261
BseLI CCNNNNNNNGG 5 cut(s) 82, 494, 495, 643, 731
BseRI GAGGAG 1 cut(s) 201
BseXI GCAGC 2 cut(s) 152, 670
BseYI CCCAGC 1 cut(s) 198
BshFI GGCC 1 cut(s) 193
BshNI GGYRCC 1 cut(s) 248
BsiSI CCGG 1 cut(s) 732
BslFI GGGAC 1 cut(s) 330
BslI CCNNNNNNNGG 5 cut(s) 82, 494, 495, 643, 731
BsmAI GTCTC 2 cut(s) 216, 324
BsmFI GGGAC 1 cut(s) 330
BsnI GGCC 1 cut(s) 193
Bsp143I GATC 3 cut(s) 127, 619, 633
BspANI GGCC 1 cut(s) 193
BspHI TCATGA 3 cut(s) 166, 180, 622
BspLI GGNNCC 2 cut(s) 129, 250
BspMI ACCTGC 1 cut(s) 634
BspPI GGATC 3 cut(s) 122, 135, 628
BspT107I GGYRCC 1 cut(s) 248
BssECI CCNNGG 2 cut(s) 131, 574
BssMI GATC 3 cut(s) 127, 619, 633
BssT1I CCWWGG 1 cut(s) 574
Bst4CI ACNGT 2 cut(s) 423, 477
Bst6I CTCTTC 1 cut(s) 81
BstC8I GCNNGC 3 cut(s) 158, 234, 238
BstENI CCTNNNNNAGG 1 cut(s) 641
BstF5I GGATG 3 cut(s) 141, 208, 261
BstH2I RGCGCY 1 cut(s) 18
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 3 cut(s) 130, 622, 636
BstMAI GTCTC 2 cut(s) 216, 324
BstMBI GATC 3 cut(s) 127, 619, 633
BstMWI GCNNNNNNNGC 1 cut(s) 689
BstV1I GCAGC 2 cut(s) 152, 670
BstX2I RGATCY 2 cut(s) 127, 633
BstXI CCANNNNNNTGG 1 cut(s) 362
BstYI RGATCY 2 cut(s) 127, 633
BsuRI GGCC 1 cut(s) 193
BtgZI GCGATG 1 cut(s) 45
BtsCI GGATG 3 cut(s) 141, 208, 261
BtsIMutI CAGTG 2 cut(s) 250, 660
BveI ACCTGC 1 cut(s) 634
Cac8I GCNNGC 3 cut(s) 158, 234, 238
CciI TCATGA 3 cut(s) 166, 180, 622
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 2 cut(s) 41, 191
Csp6I GTAC 1 cut(s) 442
CviAII CATG 4 cut(s) 11, 167, 181, 623
CviJI RGCY 8 cut(s) 143, 193, 198, 211, 240, 354, 539, 653
CviKI_1 RGCY 8 cut(s) 143, 193, 198, 211, 240, 354, 539, 653
CviQI GTAC 1 cut(s) 442
DpnI GATC 3 cut(s) 129, 621, 635
DpnII GATC 3 cut(s) 127, 619, 633
DraI TTTAAA 1 cut(s) 381
Eam1104I CTCTTC 1 cut(s) 81
EarI CTCTTC 1 cut(s) 81
Eco130I CCWWGG 1 cut(s) 574
Eco47I GGWCC 1 cut(s) 41
Eco57I CTGAAG 3 cut(s) 226, 370, 397
EcoNI CCTNNNNNAGG 1 cut(s) 641
EcoO109I RGGNCCY 1 cut(s) 191
EcoT14I CCWWGG 1 cut(s) 574
ErhI CCWWGG 1 cut(s) 574
FaeI CATG 4 cut(s) 14, 170, 184, 626
FaqI GGGAC 1 cut(s) 330
FatI CATG 4 cut(s) 10, 166, 180, 622
FauNDI CATATG 1 cut(s) 482
Fnu4HI GCNGC 2 cut(s) 141, 684
FokI GGATG 3 cut(s) 148, 215, 248
Fsp4HI GCNGC 2 cut(s) 141, 684
FspBI CTAG 4 cut(s) 195, 212, 590, 778
GlaI GCGC 1 cut(s) 16
GluI GCNGC 2 cut(s) 141, 684
GsaI CCCAGC 1 cut(s) 202
HaeII RGCGCY 1 cut(s) 18
HaeIII GGCC 1 cut(s) 193
HapII CCGG 1 cut(s) 732
HhaI GCGC 1 cut(s) 17
Hin1II CATG 4 cut(s) 14, 170, 184, 626
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HincII GTYRAC 2 cut(s) 565, 772
HindII GTYRAC 2 cut(s) 565, 772
HindIII AAGCTT 1 cut(s) 238
HinfI GANTC 3 cut(s) 20, 224, 468
HpaII CCGG 1 cut(s) 732
HphI GGTGA 2 cut(s) 715, 721
Hpy166II GTNNAC 3 cut(s) 409, 565, 772
Hpy188I TCNGA 4 cut(s) 135, 416, 464, 598
Hpy188III TCNNGA 6 cut(s) 53, 167, 181, 521, 623, 751
Hpy8I GTNNAC 3 cut(s) 409, 565, 772
HpyAV CCTTC 3 cut(s) 161, 469, 620
HpyCH4III ACNGT 2 cut(s) 423, 477
HpyCH4V TGCA 5 cut(s) 116, 160, 232, 686, 692
HpyF10VI GCNNNNNNNGC 1 cut(s) 689
Hsp92II CATG 4 cut(s) 14, 170, 184, 626
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 3 cut(s) 127, 619, 633
Lsp1109I GCAGC 2 cut(s) 152, 670
MaeI CTAG 4 cut(s) 195, 212, 590, 778
MaeIII GTNAC 1 cut(s) 610
MalI GATC 3 cut(s) 129, 621, 635
MboI GATC 3 cut(s) 127, 619, 633
MboII GAAGA 3 cut(s) 98, 477, 766
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 2 cut(s) 127, 633
MluCI AATT 4 cut(s) 274, 301, 360, 757
MlyI GAGTC 1 cut(s) 218
MmeI TCCRAC 1 cut(s) 63
MroXI GAANNNNTTC 1 cut(s) 674
MseI TTAA 2 cut(s) 123, 380
MslI CAYNNNNRTG 2 cut(s) 165, 558
MspI CCGG 1 cut(s) 732
MssI GTTTAAAC 1 cut(s) 381
MunI CAATTG 1 cut(s) 360
MwoI GCNNNNNNNGC 1 cut(s) 689
NdeI CATATG 1 cut(s) 482
NdeII GATC 3 cut(s) 127, 619, 633
NlaIII CATG 4 cut(s) 14, 170, 184, 626
NlaIV GGNNCC 2 cut(s) 129, 250
NmuCI GTSAC 1 cut(s) 610
PagI TCATGA 3 cut(s) 166, 180, 622
PaqCI CACCTGC 1 cut(s) 634
PdmI GAANNNNTTC 1 cut(s) 674
PfeI GAWTC 2 cut(s) 20, 468
PkrI GCNGC 2 cut(s) 142, 685
PleI GAGTC 1 cut(s) 218
PmeI GTTTAAAC 1 cut(s) 381
PpsI GAGTC 1 cut(s) 218
PspFI CCCAGC 1 cut(s) 198
PspN4I GGNNCC 2 cut(s) 129, 250
PspPI GGNCC 2 cut(s) 41, 191
PsuI RGATCY 2 cut(s) 127, 633
RsaI GTAC 1 cut(s) 443
RsaNI GTAC 1 cut(s) 442
RseI CAYNNNNRTG 2 cut(s) 165, 558
SaqAI TTAA 2 cut(s) 123, 380
SatI GCNGC 2 cut(s) 141, 684
Sau3AI GATC 3 cut(s) 127, 619, 633
Sau96I GGNCC 2 cut(s) 41, 191
SchI GAGTC 1 cut(s) 218
SinI GGWCC 1 cut(s) 41
SmiMI CAYNNNNRTG 2 cut(s) 165, 558
Sse9I AATT 4 cut(s) 274, 301, 360, 757
SspMI CTAG 4 cut(s) 195, 212, 590, 778
StyI CCWWGG 1 cut(s) 574
TaaI ACNGT 2 cut(s) 423, 477
TasI AATT 4 cut(s) 274, 301, 360, 757
TatI WGTACW 1 cut(s) 441
TfiI GAWTC 2 cut(s) 20, 468
Tru1I TTAA 2 cut(s) 123, 380
Tru9I TTAA 2 cut(s) 123, 380
TscAI CASTG 2 cut(s) 250, 667
TseFI GTSAC 1 cut(s) 610
TseI GCWGC 2 cut(s) 140, 683
Tsp45I GTSAC 1 cut(s) 610
TspDTI ATGAA 4 cut(s) 155, 250, 441, 639
TspRI CASTG 2 cut(s) 250, 667
VpaK11BI GGWCC 1 cut(s) 41
XagI CCTNNNNNAGG 1 cut(s) 641
XapI RAATTY 1 cut(s) 274
XmnI GAANNNNTTC 1 cut(s) 674
XspI CTAG 4 cut(s) 195, 212, 590, 778
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.