Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000072.1

Orthogroup ID

OG0009391

Physical Location & Seq

Genomic Coordinates Reverse (-)

12690 .. 14114

Gene Structure 1425 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000072.1_g000004.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 972 bp

atggtttttcatggcactgaatctttcagtgatgatgatggacctcttgttcttgactattacaaagaaaaatgccctttgttggaagagattgtgaggcacaatgttgaagttgcagtttttaaggatcctcggatggctgcttctctccttcgcttgcattttcatgattgttttgtcatgggttgcgatgcatctgttcttttagatagctttggaggcatcaccagtgaaaagcaagcaggccccaacctaaattctttacgaggatttgaggtcatcgatcagatcaaatacctcctggaagaggcttgtccaagaacagtatcatgtgctgatattctagcagtggctgctcgtgattctgttgcatcgagaggagggcctagctgggatgtgtggctaggcaggagagactctctacaagcaagcttcagtggtgccaatcagttcatccccgctccaaattcctctctacaaactctcatttccaatttcaaacaacagggacttgatatcggagacttggttgccttatcaggtagccacacaattggaaaggcaagatgtttaaacttcaggcagagggtctatgatgtgaacttcagaggacagtatgaaatatacgataagtacaggagatatacttccttccgaagaatcttacagtccatatgccccaaatcagggaggaacaatgatttagcacctcttgattttatgacaccagcccgatttgacaatcactattatgtcaacctactccaaggaaaaggtttgctagtttctgataatgtattggtcacgcaagatcatgaaggggagatcctaaagcaggtgtgggcttatgccactgatgagaaacttttctttgctgcatttgcaaactctatggtgaagatgggaaacatcaatccgatcaccggaaatcaaggagaaatcaggaagaattgtaggttcgtcaacacctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

323

Amino Acids

36.26

Weight (kDa)

6.39

Isoelectric Point (pI)

42.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35380 AT2G35380
fragaria_vesca	FvH4_5g21320 FvH4_5g21320
malus_domestica	MD06G1038800.v1.1
prunus_persica	Prupe.5G044000_v2.0.a1
pyrus_communis	pycom06g03260
rosa_chinensis	RchiOBHm_Chr5g0075581 RchiOBHm_Chr7g0208661
rosa_laevigata	RLG00000003203 RLG00000036579
rosa_multiflora	Rmu_co8139090.1_g000001 Rmu_sc0000072.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005990 Rroxscaffold_3G00250330
rosa_rugosa	Rorug05G0440900 Rorug07G0105300
rosa_samantha	Rh5DG530300 Rh7AG240300 Rh7DG246300
rosa_wichuraiana	Rw5G046160 Rw7G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	826
Acc36I	ACCTGC	1 cut(s)	826
AccB1I	GGYRCC	1 cut(s)	440
AccBSI	CCGCTC	1 cut(s)	461
AciI	CCGC	1 cut(s)	459
AclWI	GGATC	3 cut(s)	122, 135, 820
AcsI	RAATTY	2 cut(s)	256, 466
AcuI	CTGAAG	3 cut(s)	418, 562, 589
AfaI	GTAC	1 cut(s)	635
AfiI	CCNNNNNNNGG	6 cut(s)	82, 307, 686, 687, 835, 923
AgsI	TTSAA	2 cut(s)	110, 499
AjnI	CCWGG	1 cut(s)	300
AloI	GAACNNNNNNTCC	2 cut(s)	33, 65
AluBI	AGCT	3 cut(s)	213, 390, 432
AluI	AGCT	3 cut(s)	213, 390, 432
Alw26I	GTCTC	2 cut(s)	408, 516
AlwI	GGATC	3 cut(s)	122, 135, 820
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	2 cut(s)	244, 383
ApeKI	GCWGC	3 cut(s)	140, 353, 875
ApoI	RAATTY	2 cut(s)	256, 466
Asp700I	GAANNNNTTC	1 cut(s)	866
AspS9I	GGNCC	3 cut(s)	41, 245, 383
AsuHPI	GGTGA	3 cut(s)	217, 907, 913
AvaII	GGWCC	1 cut(s)	41
BamHI	GGATCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	440
BauI	CACGAG	1 cut(s)	357
BbvI	GCAGC	3 cut(s)	127, 340, 862
BccI	CCATC	3 cut(s)	32, 130, 895
BciT130I	CCWGG	1 cut(s)	302
BcoDI	GTCTC	2 cut(s)	408, 516
BfaI	CTAG	5 cut(s)	344, 387, 404, 782, 970
BfuAI	ACCTGC	1 cut(s)	826
BisI	GCNGC	3 cut(s)	141, 354, 876
BlsI	GCNGC	3 cut(s)	142, 355, 877
Bme1390I	CCNGG	1 cut(s)	302
Bme18I	GGWCC	1 cut(s)	41
BmgT120I	GGNCC	3 cut(s)	41, 245, 383
BmiI	GGNNCC	3 cut(s)	129, 247, 442
BmrFI	CCNGG	1 cut(s)	302
BmsI	GCATC	4 cut(s)	181, 203, 231, 380
BplI	GAGNNNNNCTC	2 cut(s)	403, 435
Bsa29I	ATCGAT	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	131, 766
BsaWI	WCCGGW	1 cut(s)	923
BsaXI	ACNNNNNCTCC	2 cut(s)	513, 543
Bsc4I	CCNNNNNNNGG	6 cut(s)	82, 307, 686, 687, 835, 923
Bse1I	ACTGG	1 cut(s)	228
BseBI	CCWGG	1 cut(s)	302
BseCI	ATCGAT	1 cut(s)	282
BseDI	CCNNGG	2 cut(s)	131, 766
BseGI	GGATG	3 cut(s)	141, 400, 453
BseLI	CCNNNNNNNGG	6 cut(s)	82, 307, 686, 687, 835, 923
BseNI	ACTGG	1 cut(s)	228
BseRI	GAGGAG	1 cut(s)	393
BseXI	GCAGC	3 cut(s)	127, 340, 862
BseYI	CCCAGC	1 cut(s)	390
BshFI	GGCC	2 cut(s)	246, 385
BshNI	GGYRCC	1 cut(s)	440
BshVI	ATCGAT	1 cut(s)	282
BsiSI	CCGG	1 cut(s)	924
BslFI	GGGAC	1 cut(s)	522
BslI	CCNNNNNNNGG	6 cut(s)	82, 307, 686, 687, 835, 923
BsmAI	GTCTC	2 cut(s)	408, 516
BsmFI	GGGAC	1 cut(s)	522
BsnI	GGCC	2 cut(s)	246, 385
Bsp143I	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
BspACI	CCGC	1 cut(s)	459
BspANI	GGCC	2 cut(s)	246, 385
BspDI	ATCGAT	1 cut(s)	282
BspHI	TCATGA	2 cut(s)	166, 814
BspLI	GGNNCC	3 cut(s)	129, 247, 442
BspMI	ACCTGC	1 cut(s)	826
BspPI	GGATC	3 cut(s)	122, 135, 820
BspT107I	GGYRCC	1 cut(s)	440
BsrBI	CCGCTC	1 cut(s)	461
BsrI	ACTGG	1 cut(s)	228
BssECI	CCNNGG	2 cut(s)	131, 766
BssMI	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
BssSI	CACGAG	1 cut(s)	357
BssT1I	CCWWGG	1 cut(s)	766
Bst2BI	CACGAG	1 cut(s)	357
Bst2UI	CCWGG	1 cut(s)	302
Bst4CI	ACNGT	3 cut(s)	325, 615, 669
Bst6I	CTCTTC	2 cut(s)	81, 300
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstC8I	GCNNGC	4 cut(s)	158, 240, 244, 430
BstENI	CCTNNNNNAGG	2 cut(s)	305, 833
BstF5I	GGATG	3 cut(s)	141, 400, 453
BstKTI	GATC	6 cut(s)	130, 286, 291, 814, 828, 921
BstMAI	GTCTC	2 cut(s)	408, 516
BstMBI	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
BstMWI	GCNNNNNNNGC	3 cut(s)	219, 353, 881
BstNI	CCWGG	1 cut(s)	302
BstSCI	CCNGG	1 cut(s)	300
BstV1I	GCAGC	3 cut(s)	127, 340, 862
BstX2I	RGATCY	2 cut(s)	127, 825
BstXI	CCANNNNNNTGG	1 cut(s)	554
BstYI	RGATCY	2 cut(s)	127, 825
Bsu15I	ATCGAT	1 cut(s)	282
BsuRI	GGCC	2 cut(s)	246, 385
BsuTUI	ATCGAT	1 cut(s)	282
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	141, 400, 453
BtsI	GCAGTG	1 cut(s)	354
BtsIMutI	CAGTG	6 cut(s)	15, 34, 235, 354, 442, 852
BveI	ACCTGC	1 cut(s)	826
Cac8I	GCNNGC	4 cut(s)	158, 240, 244, 430
CaiI	CAGNNNCTG	1 cut(s)	353
CciI	TCATGA	2 cut(s)	166, 814
Cfr13I	GGNCC	3 cut(s)	41, 245, 383
ClaI	ATCGAT	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	634
CviAII	CATG	5 cut(s)	11, 167, 181, 330, 815
CviQI	GTAC	1 cut(s)	634
DpnI	GATC	6 cut(s)	129, 285, 290, 813, 827, 920
DpnII	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
DraI	TTTAAA	1 cut(s)	573
Eam1104I	CTCTTC	2 cut(s)	81, 300
EarI	CTCTTC	2 cut(s)	81, 300
Eco130I	CCWWGG	1 cut(s)	766
Eco32I	GATATC	1 cut(s)	517
Eco47I	GGWCC	1 cut(s)	41
Eco57I	CTGAAG	3 cut(s)	418, 562, 589
EcoNI	CCTNNNNNAGG	2 cut(s)	305, 833
EcoO109I	RGGNCCY	2 cut(s)	245, 383
EcoRII	CCWGG	1 cut(s)	300
EcoRV	GATATC	1 cut(s)	517
EcoT14I	CCWWGG	1 cut(s)	766
EcoT22I	ATGCAT	1 cut(s)	196
ErhI	CCWWGG	1 cut(s)	766
FaeI	CATG	5 cut(s)	14, 170, 184, 333, 818
FaqI	GGGAC	1 cut(s)	522
FatI	CATG	5 cut(s)	10, 166, 180, 329, 814
FauI	CCCGC	1 cut(s)	466
FauNDI	CATATG	1 cut(s)	674
Fnu4HI	GCNGC	3 cut(s)	141, 354, 876
FokI	GGATG	3 cut(s)	148, 407, 440
Fsp4HI	GCNGC	3 cut(s)	141, 354, 876
FspBI	CTAG	5 cut(s)	344, 387, 404, 782, 970
GluI	GCNGC	3 cut(s)	141, 354, 876
GsaI	CCCAGC	1 cut(s)	394
HaeIII	GGCC	2 cut(s)	246, 385
HapII	CCGG	1 cut(s)	924
Hin1II	CATG	5 cut(s)	14, 170, 184, 333, 818
HincII	GTYRAC	2 cut(s)	757, 964
HindII	GTYRAC	2 cut(s)	757, 964
HindIII	AAGCTT	1 cut(s)	430
HinfI	GANTC	4 cut(s)	20, 362, 416, 660
HpaII	CCGG	1 cut(s)	924
HphI	GGTGA	3 cut(s)	217, 907, 913
Hpy166II	GTNNAC	3 cut(s)	601, 757, 964
Hpy188I	TCNGA	7 cut(s)	135, 288, 521, 608, 656, 790, 918
Hpy188III	TCNNGA	7 cut(s)	53, 167, 359, 375, 713, 815, 943
Hpy8I	GTNNAC	3 cut(s)	601, 757, 964
HpyAV	CCTTC	3 cut(s)	161, 661, 812
HpyCH4III	ACNGT	3 cut(s)	325, 615, 669
HpyCH4V	TGCA	6 cut(s)	116, 160, 194, 371, 878, 884
HpyF10VI	GCNNNNNNNGC	3 cut(s)	219, 353, 881
Hsp92II	CATG	5 cut(s)	14, 170, 184, 333, 818
Kzo9I	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	127, 340, 862
LweI	GCATC	4 cut(s)	181, 203, 231, 380
MaeI	CTAG	5 cut(s)	344, 387, 404, 782, 970
MaeIII	GTNAC	1 cut(s)	802
MalI	GATC	6 cut(s)	129, 285, 290, 813, 827, 920
MbiI	CCGCTC	1 cut(s)	461
MboI	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
MboII	GAAGA	5 cut(s)	98, 317, 669, 910, 958
MfeI	CAATTG	1 cut(s)	552
MflI	RGATCY	2 cut(s)	127, 825
MluCI	AATT	5 cut(s)	256, 466, 493, 552, 949
MlyI	GAGTC	1 cut(s)	410
MmeI	TCCRAC	1 cut(s)	63
Mph1103I	ATGCAT	1 cut(s)	196
MroXI	GAANNNNTTC	1 cut(s)	866
MseI	TTAA	2 cut(s)	123, 572
MslI	CAYNNNNRTG	2 cut(s)	165, 750
MspI	CCGG	1 cut(s)	924
MspR9I	CCNGG	1 cut(s)	302
MssI	GTTTAAAC	1 cut(s)	573
MunI	CAATTG	1 cut(s)	552
MvaI	CCWGG	1 cut(s)	302
MwoI	GCNNNNNNNGC	3 cut(s)	219, 353, 881
NdeI	CATATG	1 cut(s)	674
NdeII	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
NlaIII	CATG	5 cut(s)	14, 170, 184, 333, 818
NlaIV	GGNNCC	3 cut(s)	129, 247, 442
NmuCI	GTSAC	1 cut(s)	802
NsiI	ATGCAT	1 cut(s)	196
PagI	TCATGA	2 cut(s)	166, 814
PaqCI	CACCTGC	1 cut(s)	826
PdmI	GAANNNNTTC	1 cut(s)	866
PfeI	GAWTC	3 cut(s)	20, 362, 660
PfoI	TCCNGGA	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	142, 355, 877
PleI	GAGTC	1 cut(s)	410
PmeI	GTTTAAAC	1 cut(s)	573
PpsI	GAGTC	1 cut(s)	410
Psp6I	CCWGG	1 cut(s)	300
PspFI	CCCAGC	1 cut(s)	390
PspGI	CCWGG	1 cut(s)	300
PspN4I	GGNNCC	3 cut(s)	129, 247, 442
PspPI	GGNCC	3 cut(s)	41, 245, 383
PstNI	CAGNNNCTG	1 cut(s)	353
PsuI	RGATCY	2 cut(s)	127, 825
RsaI	GTAC	1 cut(s)	635
RsaNI	GTAC	1 cut(s)	634
RseI	CAYNNNNRTG	2 cut(s)	165, 750
SaqAI	TTAA	2 cut(s)	123, 572
SatI	GCNGC	3 cut(s)	141, 354, 876
Sau3AI	GATC	6 cut(s)	127, 283, 288, 811, 825, 918
Sau96I	GGNCC	3 cut(s)	41, 245, 383
SchI	GAGTC	1 cut(s)	410
ScrFI	CCNGG	1 cut(s)	302
SfaNI	GCATC	4 cut(s)	181, 203, 231, 380
SinI	GGWCC	1 cut(s)	41
SmiMI	CAYNNNNRTG	2 cut(s)	165, 750
Sse9I	AATT	5 cut(s)	256, 466, 493, 552, 949
SsiI	CCGC	1 cut(s)	459
SspMI	CTAG	5 cut(s)	344, 387, 404, 782, 970
StyD4I	CCNGG	1 cut(s)	300
StyI	CCWWGG	1 cut(s)	766
TaaI	ACNGT	3 cut(s)	325, 615, 669
TaqI	TCGA	2 cut(s)	282, 374
TasI	AATT	5 cut(s)	256, 466, 493, 552, 949
TatI	WGTACW	1 cut(s)	633
TfiI	GAWTC	3 cut(s)	20, 362, 660
Tru1I	TTAA	2 cut(s)	123, 572
Tru9I	TTAA	2 cut(s)	123, 572
TscAI	CASTG	6 cut(s)	22, 34, 235, 354, 442, 859
TseFI	GTSAC	1 cut(s)	802
TseI	GCWGC	3 cut(s)	140, 353, 875
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	4 cut(s)	155, 442, 633, 831
TspRI	CASTG	6 cut(s)	22, 34, 235, 354, 442, 859
VpaK11BI	GGWCC	1 cut(s)	41
XagI	CCTNNNNNAGG	2 cut(s)	305, 833
XapI	RAATTY	2 cut(s)	256, 466
XmnI	GAANNNNTTC	1 cut(s)	866
XspI	CTAG	5 cut(s)	344, 387, 404, 782, 970
Zsp2I	ATGCAT	1 cut(s)	196

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.