Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr6

Orthogroup ID

OG0009391

Physical Location & Seq

Genomic Coordinates Reverse (-)

4051347 .. 4052448

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom06g03260.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 780 bp

ATGATGTGGAGGATTTTCTTGAGTTTAGTACTGGCAGCAGTAGTTTTGCAGGGCACTGAACCGCTGAATGACGAAGATGGACCTCTTGTTCTTGACTACTATAGAGAACAGTGCCCTTTGGCGGAAGAGATTGTGAGCCGTAGTGTTGCGGTTGCAGTGGCTAAAGATCCTCGAATGGCTGCTTCCCTCCTTCGACTGCACTTTCATGATTGTTTTGTCATGGGGTGCGATGCATCTGTTCTTTTGGATAGCTATGGAGGCATAACAAGTGAGAAACAAGCCGGCCCCAACCACAAGTCTTTACGAGGATTTAAGGTTGTTGATGAGATAAAGTATCTCCTGGAAGAGGCTTGTCCAGGAACAGTTTCATGTGCTGACATTCTAGCCTTGGCTGCCCGTGATGCTGTTGCACTGAGAGGCGGACCACGGTGGAATGTGTGGCTAGGCAGGAGAGACTCACTGGAAGCAAGCTTCAGCGGCGCCAACCAGTTCATCCCTGCTCCGAATTCCTCTCTAGAAAATCTCATTGCCAATTTCAAACAACAGGGCCTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATGGGAGAGGCACAATGTTTGAGTTTCAGGCAGAGGGTGTATGATGTGCAGCTGAGAGGAGAATATGAATTGCACGATAAATACAAGCGATATACAACCTTTCGAAGAATCTTAAGGTCCATATGCCCTGAATCGGGGAGGGACCACGACCTAGCACCGCTCGATCGATCAAACACCAACCAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

260

Amino Acids

28.77

Weight (kDa)

5.71

Isoelectric Point (pI)

45.73

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35380 AT2G35380
fragaria_vesca	FvH4_5g21320 FvH4_5g21320
malus_domestica	MD06G1038800.v1.1
prunus_persica	Prupe.5G044000_v2.0.a1
pyrus_communis	pycom06g03260
rosa_chinensis	RchiOBHm_Chr5g0075581 RchiOBHm_Chr7g0208661
rosa_laevigata	RLG00000003203 RLG00000036579
rosa_multiflora	Rmu_co8139090.1_g000001 Rmu_sc0000072.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005990 Rroxscaffold_3G00250330
rosa_rugosa	Rorug05G0440900 Rorug07G0105300
rosa_samantha	Rh5DG530300 Rh7AG240300 Rh7DG246300
rosa_wichuraiana	Rw5G046160 Rw7G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	479
AccB7I	CCANNNNNTGG	1 cut(s)	592
AccBSI	CCGCTC	1 cut(s)	751
AciI	CCGC	6 cut(s)	62, 122, 149, 420, 477, 749
AclWI	GGATC	1 cut(s)	161
AcsI	RAATTY	1 cut(s)	505
AcuI	CTGAAG	1 cut(s)	457
AcyI	GRCGYC	1 cut(s)	480
AfaI	GTAC	1 cut(s)	30
AfiI	CCNNNNNNNGG	5 cut(s)	121, 346, 592, 724, 725
AflII	CTTAAG	1 cut(s)	703
AgsI	TTSAA	1 cut(s)	538
AjnI	CCWGG	2 cut(s)	339, 355
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	3 cut(s)	252, 471, 643
AluI	AGCT	3 cut(s)	252, 471, 643
Alw26I	GTCTC	2 cut(s)	447, 555
AlwI	GGATC	1 cut(s)	161
AoxI	GGCC	2 cut(s)	283, 547
ApeKI	GCWGC	4 cut(s)	35, 179, 392, 640
ApoI	RAATTY	1 cut(s)	505
Asp700I	GAANNNNTTC	1 cut(s)	364
AspLEI	GCGC	1 cut(s)	482
AspS9I	GGNCC	6 cut(s)	80, 284, 422, 547, 708, 733
AsuII	TTCGAA	1 cut(s)	694
AvaII	GGWCC	4 cut(s)	80, 422, 708, 733
BaeGI	GKGCMC	2 cut(s)	56, 116
BanI	GGYRCC	1 cut(s)	479
BbvI	GCAGC	4 cut(s)	47, 166, 379, 652
BccI	CCATC	1 cut(s)	71
BceAI	ACGGC	1 cut(s)	123
BciT130I	CCWGG	2 cut(s)	341, 357
BcoDI	GTCTC	2 cut(s)	447, 555
BfaI	CTAG	4 cut(s)	383, 443, 515, 743
BfmI	CTRYAG	1 cut(s)	100
BfoI	RGCGCY	1 cut(s)	483
BfrI	CTTAAG	1 cut(s)	703
BisI	GCNGC	5 cut(s)	36, 180, 393, 478, 641
BlsI	GCNGC	5 cut(s)	37, 181, 394, 479, 642
BmcAI	AGTACT	1 cut(s)	30
Bme1390I	CCNGG	2 cut(s)	341, 357
Bme18I	GGWCC	4 cut(s)	80, 422, 708, 733
BmgT120I	GGNCC	6 cut(s)	80, 284, 422, 547, 708, 733
BmiI	GGNNCC	3 cut(s)	286, 481, 734
BmrFI	CCNGG	2 cut(s)	341, 357
BmsI	GCATC	3 cut(s)	220, 242, 391
Bpu14I	TTCGAA	1 cut(s)	694
BpuEI	CTTGAG	1 cut(s)	40
Bsa29I	ATCGAT	1 cut(s)	757
BsaHI	GRCGYC	1 cut(s)	480
BsaJI	CCNNGG	2 cut(s)	387, 425
BsaXI	ACNNNNNCTCC	2 cut(s)	552, 582
Bsc4I	CCNNNNNNNGG	5 cut(s)	121, 346, 592, 724, 725
Bse118I	RCCGGY	1 cut(s)	281
Bse1I	ACTGG	3 cut(s)	36, 465, 487
Bse3DI	GCAATG	1 cut(s)	525
BseBI	CCWGG	2 cut(s)	341, 357
BseCI	ATCGAT	1 cut(s)	757
BseDI	CCNNGG	2 cut(s)	387, 425
BseGI	GGATG	1 cut(s)	492
BseLI	CCNNNNNNNGG	5 cut(s)	121, 346, 592, 724, 725
BseMI	GCAATG	1 cut(s)	525
BseMII	CTCAG	2 cut(s)	404, 635
BseNI	ACTGG	3 cut(s)	36, 465, 487
BseRI	GAGGAG	1 cut(s)	663
BseSI	GKGCMC	2 cut(s)	56, 116
BseXI	GCAGC	4 cut(s)	47, 166, 379, 652
BsgI	GTGCAG	2 cut(s)	182, 659
Bsh1285I	CGRYCG	1 cut(s)	757
BshFI	GGCC	2 cut(s)	285, 549
BshNI	GGYRCC	1 cut(s)	479
BshVI	ATCGAT	1 cut(s)	757
BsiEI	CGRYCG	1 cut(s)	757
BsiSI	CCGG	1 cut(s)	282
BslFI	GGGAC	1 cut(s)	746
BslI	CCNNNNNNNGG	5 cut(s)	121, 346, 592, 724, 725
BsmAI	GTCTC	2 cut(s)	447, 555
BsmFI	GGGAC	1 cut(s)	746
BsnI	GGCC	2 cut(s)	285, 549
Bsp119I	TTCGAA	1 cut(s)	694
Bsp1286I	GDGCHC	2 cut(s)	56, 116
Bsp143I	GATC	3 cut(s)	166, 754, 758
BspACI	CCGC	6 cut(s)	62, 122, 149, 420, 477, 749
BspANI	GGCC	2 cut(s)	285, 549
BspCNI	CTCAG	2 cut(s)	405, 636
BspDI	ATCGAT	1 cut(s)	757
BspHI	TCATGA	1 cut(s)	205
BspLI	GGNNCC	3 cut(s)	286, 481, 734
BspPI	GGATC	1 cut(s)	161
BspT104I	TTCGAA	1 cut(s)	694
BspT107I	GGYRCC	1 cut(s)	479
BspTI	CTTAAG	1 cut(s)	703
BsrBI	CCGCTC	1 cut(s)	751
BsrDI	GCAATG	1 cut(s)	525
BsrFI	RCCGGY	1 cut(s)	281
BsrI	ACTGG	3 cut(s)	36, 465, 487
BssAI	RCCGGY	1 cut(s)	281
BssECI	CCNNGG	2 cut(s)	387, 425
BssMI	GATC	3 cut(s)	166, 754, 758
BssNI	GRCGYC	1 cut(s)	480
BssT1I	CCWWGG	1 cut(s)	387
Bst2UI	CCWGG	2 cut(s)	341, 357
Bst4CI	ACNGT	3 cut(s)	111, 364, 429
Bst6I	CTCTTC	2 cut(s)	120, 339
BstACI	GRCGYC	1 cut(s)	480
BstAFI	CTTAAG	1 cut(s)	703
BstBI	TTCGAA	1 cut(s)	694
BstC8I	GCNNGC	2 cut(s)	283, 469
BstDEI	CTNAG	2 cut(s)	413, 644
BstDSI	CCRYGG	1 cut(s)	425
BstENI	CCTNNNNNAGG	1 cut(s)	344
BstF5I	GGATG	1 cut(s)	492
BstH2I	RGCGCY	1 cut(s)	483
BstHHI	GCGC	1 cut(s)	482
BstKTI	GATC	3 cut(s)	169, 757, 761
BstMAI	GTCTC	2 cut(s)	447, 555
BstMBI	GATC	3 cut(s)	166, 754, 758
BstMCI	CGRYCG	1 cut(s)	757
BstMWI	GCNNNNNNNGC	4 cut(s)	258, 392, 401, 477
BstNI	CCWGG	2 cut(s)	341, 357
BstSCI	CCNGG	2 cut(s)	339, 355
BstSFI	CTRYAG	1 cut(s)	100
BstSLI	GKGCMC	2 cut(s)	56, 116
BstV1I	GCAGC	4 cut(s)	47, 166, 379, 652
BstX2I	RGATCY	1 cut(s)	166
BstYI	RGATCY	1 cut(s)	166
Bsu15I	ATCGAT	1 cut(s)	757
BsuRI	GGCC	2 cut(s)	285, 549
BsuTUI	ATCGAT	1 cut(s)	757
BtgI	CCRYGG	1 cut(s)	425
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	1 cut(s)	492
BtsI	GCAGTG	1 cut(s)	162
BtsIMutI	CAGTG	5 cut(s)	54, 116, 162, 410, 458
Cac8I	GCNNGC	2 cut(s)	283, 469
CciI	TCATGA	1 cut(s)	205
CfoI	GCGC	1 cut(s)	482
Cfr10I	RCCGGY	1 cut(s)	281
Cfr13I	GGNCC	6 cut(s)	80, 284, 422, 547, 708, 733
ClaI	ATCGAT	1 cut(s)	757
Csp6I	GTAC	1 cut(s)	29
CviAII	CATG	3 cut(s)	206, 220, 369
CviQI	GTAC	1 cut(s)	29
DdeI	CTNAG	2 cut(s)	413, 644
DinI	GGCGCC	1 cut(s)	481
DpnI	GATC	3 cut(s)	168, 756, 760
DpnII	GATC	3 cut(s)	166, 754, 758
Eam1104I	CTCTTC	2 cut(s)	120, 339
EarI	CTCTTC	2 cut(s)	120, 339
EciI	GGCGGA	2 cut(s)	137, 435
Eco130I	CCWWGG	1 cut(s)	387
Eco47I	GGWCC	4 cut(s)	80, 422, 708, 733
Eco57I	CTGAAG	1 cut(s)	457
EcoNI	CCTNNNNNAGG	1 cut(s)	344
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRI	GAATTC	1 cut(s)	505
EcoRII	CCWGG	2 cut(s)	339, 355
EcoT14I	CCWWGG	1 cut(s)	387
EcoT22I	ATGCAT	1 cut(s)	235
EgeI	GGCGCC	1 cut(s)	481
EheI	GGCGCC	1 cut(s)	481
ErhI	CCWWGG	1 cut(s)	387
FaeI	CATG	3 cut(s)	209, 223, 372
FaqI	GGGAC	1 cut(s)	746
FatI	CATG	3 cut(s)	205, 219, 368
FauNDI	CATATG	1 cut(s)	713
Fnu4HI	GCNGC	5 cut(s)	36, 180, 393, 478, 641
FokI	GGATG	1 cut(s)	479
Fsp4HI	GCNGC	5 cut(s)	36, 180, 393, 478, 641
FspBI	CTAG	4 cut(s)	383, 443, 515, 743
GlaI	GCGC	1 cut(s)	481
GluI	GCNGC	5 cut(s)	36, 180, 393, 478, 641
HaeII	RGCGCY	1 cut(s)	483
HaeIII	GGCC	2 cut(s)	285, 549
HapII	CCGG	1 cut(s)	282
HhaI	GCGC	1 cut(s)	482
Hin1I	GRCGYC	1 cut(s)	480
Hin1II	CATG	3 cut(s)	209, 223, 372
Hin6I	GCGC	1 cut(s)	480
HinP1I	GCGC	1 cut(s)	480
HindIII	AAGCTT	1 cut(s)	469
HinfI	GANTC	3 cut(s)	455, 699, 722
HpaII	CCGG	1 cut(s)	282
Hpy188I	TCNGA	1 cut(s)	504
Hpy188III	TCNNGA	4 cut(s)	19, 92, 206, 515
HpyAV	CCTTC	1 cut(s)	200
HpyCH4III	ACNGT	3 cut(s)	111, 364, 429
HpyCH4V	TGCA	7 cut(s)	49, 155, 199, 233, 410, 640, 664
HpyF10VI	GCNNNNNNNGC	4 cut(s)	258, 392, 401, 477
HpyF3I	CTNAG	2 cut(s)	413, 644
Hsp92I	GRCGYC	1 cut(s)	480
Hsp92II	CATG	3 cut(s)	209, 223, 372
HspAI	GCGC	1 cut(s)	480
KasI	GGCGCC	1 cut(s)	479
KroI	GCCGGC	1 cut(s)	281
KroNI	GCCGGC	1 cut(s)	283
Kzo9I	GATC	3 cut(s)	166, 754, 758
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	4 cut(s)	47, 166, 379, 652
LweI	GCATC	3 cut(s)	220, 242, 391
MaeI	CTAG	4 cut(s)	383, 443, 515, 743
MalI	GATC	3 cut(s)	168, 756, 760
MbiI	CCGCTC	1 cut(s)	751
MboI	GATC	3 cut(s)	166, 754, 758
MboII	GAAGA	4 cut(s)	86, 137, 356, 708
MflI	RGATCY	1 cut(s)	166
MhlI	GDGCHC	2 cut(s)	56, 116
MluCI	AATT	3 cut(s)	505, 532, 659
Mly113I	GGCGCC	1 cut(s)	480
MlyI	GAGTC	1 cut(s)	449
Mph1103I	ATGCAT	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	281
MroXI	GAANNNNTTC	1 cut(s)	364
MseI	TTAA	2 cut(s)	312, 704
MslI	CAYNNNNRTG	1 cut(s)	204
MspA1I	CMGCKG	3 cut(s)	64, 477, 643
MspCI	CTTAAG	1 cut(s)	703
MspI	CCGG	1 cut(s)	282
MspR9I	CCNGG	2 cut(s)	341, 357
MvaI	CCWGG	2 cut(s)	341, 357
MwoI	GCNNNNNNNGC	4 cut(s)	258, 392, 401, 477
NaeI	GCCGGC	1 cut(s)	283
NarI	GGCGCC	1 cut(s)	480
NdeI	CATATG	1 cut(s)	713
NdeII	GATC	3 cut(s)	166, 754, 758
NgoMIV	GCCGGC	1 cut(s)	281
NlaIII	CATG	3 cut(s)	209, 223, 372
NlaIV	GGNNCC	3 cut(s)	286, 481, 734
NsiI	ATGCAT	1 cut(s)	235
NspV	TTCGAA	1 cut(s)	694
PagI	TCATGA	1 cut(s)	205
PdiI	GCCGGC	1 cut(s)	283
PdmI	GAANNNNTTC	1 cut(s)	364
PfeI	GAWTC	2 cut(s)	699, 722
PflMI	CCANNNNNTGG	1 cut(s)	592
PfoI	TCCNGGA	2 cut(s)	339, 355
PkrI	GCNGC	5 cut(s)	37, 181, 394, 479, 642
Ple19I	CGATCG	1 cut(s)	757
PleI	GAGTC	1 cut(s)	449
PluTI	GGCGCC	1 cut(s)	483
PpsI	GAGTC	1 cut(s)	449
Psp6I	CCWGG	2 cut(s)	339, 355
PspGI	CCWGG	2 cut(s)	339, 355
PspN4I	GGNNCC	3 cut(s)	286, 481, 734
PspPI	GGNCC	6 cut(s)	80, 284, 422, 547, 708, 733
PsuI	RGATCY	1 cut(s)	166
PvuI	CGATCG	1 cut(s)	757
PvuII	CAGCTG	1 cut(s)	643
RsaI	GTAC	1 cut(s)	30
RsaNI	GTAC	1 cut(s)	29
RseI	CAYNNNNRTG	1 cut(s)	204
SaqAI	TTAA	2 cut(s)	312, 704
SatI	GCNGC	5 cut(s)	36, 180, 393, 478, 641
Sau3AI	GATC	3 cut(s)	166, 754, 758
Sau96I	GGNCC	6 cut(s)	80, 284, 422, 547, 708, 733
ScaI	AGTACT	1 cut(s)	30
SchI	GAGTC	1 cut(s)	449
ScrFI	CCNGG	2 cut(s)	341, 357
SduI	GDGCHC	2 cut(s)	56, 116
SetI	ASST	9 cut(s)	85, 254, 318, 473, 583, 645, 692, 710, 744
SfaNI	GCATC	3 cut(s)	220, 242, 391
SfcI	CTRYAG	1 cut(s)	100
SfoI	GGCGCC	1 cut(s)	481
SfuI	TTCGAA	1 cut(s)	694
SinI	GGWCC	4 cut(s)	80, 422, 708, 733
SmiMI	CAYNNNNRTG	1 cut(s)	204
SmlI	CTYRAG	2 cut(s)	19, 703
SmoI	CTYRAG	2 cut(s)	19, 703
Sse9I	AATT	3 cut(s)	505, 532, 659
SsiI	CCGC	6 cut(s)	62, 122, 149, 420, 477, 749
SspDI	GGCGCC	1 cut(s)	479
SspMI	CTAG	4 cut(s)	383, 443, 515, 743
StyD4I	CCNGG	2 cut(s)	339, 355
StyI	CCWWGG	1 cut(s)	387
TaaI	ACNGT	3 cut(s)	111, 364, 429
TaqI	TCGA	5 cut(s)	172, 193, 694, 753, 757
TasI	AATT	3 cut(s)	505, 532, 659
TatI	WGTACW	1 cut(s)	28
TauI	GCSGC	1 cut(s)	480
TfiI	GAWTC	2 cut(s)	699, 722
Tru1I	TTAA	2 cut(s)	312, 704
Tru9I	TTAA	2 cut(s)	312, 704
TscAI	CASTG	5 cut(s)	61, 116, 162, 417, 465
TseI	GCWGC	4 cut(s)	35, 179, 392, 640
TspDTI	ATGAA	4 cut(s)	194, 357, 481, 672
TspRI	CASTG	5 cut(s)	61, 116, 162, 417, 465
Van91I	CCANNNNNTGG	1 cut(s)	592
Vha464I	CTTAAG	1 cut(s)	703
VpaK11BI	GGWCC	4 cut(s)	80, 422, 708, 733
XagI	CCTNNNNNAGG	1 cut(s)	344
XapI	RAATTY	1 cut(s)	505
XbaI	TCTAGA	1 cut(s)	514
XmnI	GAANNNNTTC	1 cut(s)	364
XspI	CTAG	4 cut(s)	383, 443, 515, 743
ZrmI	AGTACT	1 cut(s)	30
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.