RchiOBHm_Chr5g0075581

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
OG0009391
Physical Location & Seq
Forward (+)
81350896 .. 81353248
2353 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35029

Sequence Viewer

Length: 1011 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTGGTAGCAATGGTCTTTCATGGCACTGAATCTTTAAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAGTGCCCTTTGTTGGAAGAGATTGTGAAGCACAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGTTTTGGAGGCATTACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTTATCGATCAGATCAAATACATCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCTGTTGCATCGAGGGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCCCTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATAACTCTCTAGAAACTCTCATTTCCAATTTCAAACAACAAGGACTTGATATAGAAGACTTGGTTGCCTTGTCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAGCTTCAGGCAGAGGGTGTATGATGTGAACTTCAAAGGACAGTACGAAATATACGATAAGTACAGGAGGTATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACTCCAGCCAGATTTGACAATCATTATTATGTTAACCTACTCCAAGGAAAAGGTTTGCTGGGTTCTGATACTGTATTGGTCACACAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTTCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAGTTGTAGGTTTGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

336

Amino Acids

37.69

Weight (kDa)

6.19

Isoelectric Point (pI)

42.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 294 4.1e-80 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 962
AccI GTMKAC 1 cut(s) 683
AclWI GGATC 2 cut(s) 161, 859
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 457, 601
AfaI GTAC 2 cut(s) 656, 674
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
AgsI TTSAA 3 cut(s) 149, 538, 646
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 429, 471, 615
AluI AGCT 3 cut(s) 429, 471, 615
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 2 cut(s) 161, 859
AoxI GGCC 2 cut(s) 283, 422
ApeKI GCWGC 2 cut(s) 179, 392
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 905
AspS9I GGNCC 3 cut(s) 80, 284, 422
AsuHPI GGTGA 1 cut(s) 946
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 479
BarI GAAGNNNNNNTAC 2 cut(s) 674, 706
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 166, 379
BccI CCATC 2 cut(s) 71, 934
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 5 cut(s) 383, 426, 443, 515, 1009
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 2 cut(s) 180, 393
BlsI GCNGC 2 cut(s) 181, 394
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 80, 284, 422
BmiI GGNNCC 2 cut(s) 286, 481
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 220, 242, 419
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 750
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 805
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
Bse1I ACTGG 3 cut(s) 267, 487, 967
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 805
BseGI GGATG 3 cut(s) 336, 439, 492
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 267, 487, 967
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 166, 379
BseYI CCCAGC 2 cut(s) 429, 820
BshFI GGCC 2 cut(s) 285, 424
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 2 cut(s) 285, 424
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 166, 322, 327, 850, 864
BspANI GGCC 2 cut(s) 285, 424
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 2 cut(s) 205, 853
BspLI GGNNCC 2 cut(s) 286, 481
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 2 cut(s) 161, 859
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 267, 487, 967
BssECI CCNNGG 1 cut(s) 805
BssMI GATC 5 cut(s) 166, 322, 327, 850, 864
BssNAI GTATAC 1 cut(s) 684
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 805
Bst1107I GTATAC 1 cut(s) 684
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 364, 654, 708, 835
Bst6I CTCTTC 3 cut(s) 120, 339, 980
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
BstENI CCTNNNNNAGG 2 cut(s) 344, 872
BstF5I GGATG 3 cut(s) 336, 439, 492
BstKTI GATC 5 cut(s) 169, 325, 330, 853, 867
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 166, 322, 327, 850, 864
BstMWI GCNNNNNNNGC 2 cut(s) 392, 920
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 166, 379
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 166, 864
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 2 cut(s) 166, 864
BstZ17I GTATAC 1 cut(s) 684
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 285, 424
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 336, 439, 492
BtsIMutI CAGTG 5 cut(s) 54, 274, 481, 891, 960
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
CciI TCATGA 2 cut(s) 205, 853
Cfr13I GGNCC 3 cut(s) 80, 284, 422
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 2 cut(s) 655, 673
CviAII CATG 5 cut(s) 50, 206, 220, 369, 854
CviQI GTAC 2 cut(s) 655, 673
DpnI GATC 5 cut(s) 168, 324, 329, 852, 866
DpnII GATC 5 cut(s) 166, 322, 327, 850, 864
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 120, 339, 980
EarI CTCTTC 3 cut(s) 120, 339, 980
Eco130I CCWWGG 1 cut(s) 805
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 457, 601
EcoNI CCTNNNNNAGG 2 cut(s) 344, 872
EcoO109I RGGNCCY 2 cut(s) 284, 422
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 805
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 5 cut(s) 53, 209, 223, 372, 857
FatI CATG 5 cut(s) 49, 205, 219, 368, 853
FauNDI CATATG 1 cut(s) 713
FblI GTMKAC 1 cut(s) 683
Fnu4HI GCNGC 2 cut(s) 180, 393
FokI GGATG 3 cut(s) 323, 446, 479
Fsp4HI GCNGC 2 cut(s) 180, 393
FspBI CTAG 5 cut(s) 383, 426, 443, 515, 1009
GluI GCNGC 2 cut(s) 180, 393
GsaI CCCAGC 2 cut(s) 433, 824
GsuI CTGGAG 1 cut(s) 750
HaeIII GGCC 2 cut(s) 285, 424
Hin1II CATG 5 cut(s) 53, 209, 223, 372, 857
HincII GTYRAC 2 cut(s) 796, 1003
HindII GTYRAC 2 cut(s) 796, 1003
HindIII AAGCTT 2 cut(s) 469, 613
HinfI GANTC 5 cut(s) 59, 401, 455, 699, 763
HpaI GTTAAC 1 cut(s) 796
HphI GGTGA 1 cut(s) 946
Hpy166II GTNNAC 4 cut(s) 640, 684, 796, 1003
Hpy188I TCNGA 3 cut(s) 327, 695, 829
Hpy188III TCNNGA 8 cut(s) 25, 92, 206, 398, 515, 752, 854, 982
Hpy8I GTNNAC 4 cut(s) 640, 684, 796, 1003
HpyAV CCTTC 4 cut(s) 4, 200, 700, 851
HpyCH4III ACNGT 4 cut(s) 364, 654, 708, 835
HpyCH4V TGCA 6 cut(s) 155, 199, 233, 410, 463, 923
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 920
Hsp92II CATG 5 cut(s) 53, 209, 223, 372, 857
KspAI GTTAAC 1 cut(s) 796
Kzo9I GATC 5 cut(s) 166, 322, 327, 850, 864
LmnI GCTCC 2 cut(s) 4, 505
Lsp1109I GCAGC 2 cut(s) 166, 379
LweI GCATC 3 cut(s) 220, 242, 419
MaeI CTAG 5 cut(s) 383, 426, 443, 515, 1009
MaeIII GTNAC 1 cut(s) 841
MalI GATC 5 cut(s) 168, 324, 329, 852, 866
MboI GATC 5 cut(s) 166, 322, 327, 850, 864
MboII GAAGA 6 cut(s) 137, 356, 572, 708, 949, 997
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 2 cut(s) 166, 864
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 295, 532, 591
MlyI GAGTC 2 cut(s) 449, 757
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 4 cut(s) 65, 162, 611, 795
MslI CAYNNNNRTG 2 cut(s) 204, 789
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 392, 920
NdeI CATATG 1 cut(s) 713
NdeII GATC 5 cut(s) 166, 322, 327, 850, 864
NlaIII CATG 5 cut(s) 53, 209, 223, 372, 857
NlaIV GGNNCC 2 cut(s) 286, 481
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 2 cut(s) 205, 853
PaqCI CACCTGC 1 cut(s) 865
PcsI WCGNNNNNNNCGW 1 cut(s) 663
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 3 cut(s) 59, 401, 699
PflMI CCANNNNNTGG 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 181, 394
PleI GAGTC 2 cut(s) 449, 757
PpsI GAGTC 2 cut(s) 449, 757
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 2 cut(s) 429, 820
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 286, 481
PspPI GGNCC 3 cut(s) 80, 284, 422
PsuI RGATCY 2 cut(s) 166, 864
RsaI GTAC 2 cut(s) 656, 674
RsaNI GTAC 2 cut(s) 655, 673
RseI CAYNNNNRTG 2 cut(s) 204, 789
SaqAI TTAA 4 cut(s) 65, 162, 611, 795
SatI GCNGC 2 cut(s) 180, 393
Sau3AI GATC 5 cut(s) 166, 322, 327, 850, 864
Sau96I GGNCC 3 cut(s) 80, 284, 422
SchI GAGTC 2 cut(s) 449, 757
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 3 cut(s) 220, 242, 419
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 204, 789
Sse9I AATT 3 cut(s) 295, 532, 591
SspMI CTAG 5 cut(s) 383, 426, 443, 515, 1009
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 4 cut(s) 364, 654, 708, 835
TaqI TCGA 3 cut(s) 172, 321, 413
TasI AATT 3 cut(s) 295, 532, 591
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 3 cut(s) 59, 401, 699
Tru1I TTAA 4 cut(s) 65, 162, 611, 795
Tru9I TTAA 4 cut(s) 65, 162, 611, 795
TscAI CASTG 5 cut(s) 61, 274, 481, 898, 967
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 2 cut(s) 179, 392
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 5 cut(s) 38, 194, 481, 870, 906
TspRI CASTG 5 cut(s) 61, 274, 481, 898, 967
Van91I CCANNNNNTGG 1 cut(s) 962
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 2 cut(s) 344, 872
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 683
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 5 cut(s) 383, 426, 443, 515, 1009
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.