Rroxscaffold_3G00250330

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000003
OG0009391
Physical Location & Seq
Reverse (-)
44134764 .. 44136186
1423 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_3G00250330.1

Sequence Viewer

Length: 894 bp
ATGATGGAGCAGAAGGGGAGGATATTCTTGATTTTAGCAGCAATGGTTTTTCATGGCACTGAATCTTTCAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGGTTGCGATGCATCTGTTCTTTTAGATAGCTTTGGAGGCATCACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTCATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCAGTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCTGCTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATAGGAGACTTGGTTGCCTTATCAGGCAGAGGGTCTATGCACCAGTATGAAATATACGACAAGTACAGGAGACACACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGACGAACAATGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCACTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTACAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

297

Amino Acids

33.04

Weight (kDa)

5.56

Isoelectric Point (pI)

46.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 37 - 255 1.9e-57 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 748
Acc36I ACCTGC 2 cut(s) 149, 748
AccB1I GGYRCC 1 cut(s) 416
AccB7I CCANNNNNTGG 1 cut(s) 845
AclWI GGATC 1 cut(s) 742
AcsI RAATTY 2 cut(s) 232, 442
AcuI CTGAAG 1 cut(s) 394
AfaI GTAC 1 cut(s) 557
AfiI CCNNNNNNNGG 6 cut(s) 124, 283, 608, 609, 757, 845
AgsI TTSAA 2 cut(s) 152, 475
AjnI CCWGG 1 cut(s) 276
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 3 cut(s) 189, 366, 408
AluI AGCT 3 cut(s) 189, 366, 408
Alw26I GTCTC 3 cut(s) 384, 492, 556
AlwI GGATC 1 cut(s) 742
AlwNI CAGNNNCTG 1 cut(s) 329
AoxI GGCC 2 cut(s) 220, 359
ApeKI GCWGC 3 cut(s) 38, 329, 797
ApoI RAATTY 2 cut(s) 232, 442
Asp700I GAANNNNTTC 1 cut(s) 788
AspS9I GGNCC 3 cut(s) 83, 221, 359
AsuHPI GGTGA 2 cut(s) 193, 829
AvaII GGWCC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 416
BauI CACGAG 1 cut(s) 333
BbvI GCAGC 3 cut(s) 50, 316, 784
BccI CCATC 2 cut(s) 74, 817
BciT130I CCWGG 1 cut(s) 278
BcoDI GTCTC 3 cut(s) 384, 492, 556
BfaI CTAG 5 cut(s) 320, 363, 380, 704, 892
BfuAI ACCTGC 2 cut(s) 149, 748
BisI GCNGC 3 cut(s) 39, 330, 798
BlsI GCNGC 3 cut(s) 40, 331, 799
Bme1390I CCNGG 1 cut(s) 278
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 83, 221, 359
BmiI GGNNCC 2 cut(s) 223, 418
BmrFI CCNGG 1 cut(s) 278
BmsI GCATC 4 cut(s) 157, 179, 207, 356
BplI GAGNNNNNCTC 2 cut(s) 379, 411
Bsa29I ATCGAT 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 688
BsaXI ACNNNNNCTCC 2 cut(s) 489, 519
Bsc4I CCNNNNNNNGG 6 cut(s) 124, 283, 608, 609, 757, 845
Bse1I ACTGG 3 cut(s) 204, 535, 850
Bse3DI GCAATG 1 cut(s) 48
BseBI CCWGG 1 cut(s) 278
BseCI ATCGAT 1 cut(s) 258
BseDI CCNNGG 1 cut(s) 688
BseGI GGATG 2 cut(s) 376, 429
BseLI CCNNNNNNNGG 6 cut(s) 124, 283, 608, 609, 757, 845
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 3 cut(s) 204, 535, 850
BseRI GAGGAG 1 cut(s) 369
BseXI GCAGC 3 cut(s) 50, 316, 784
BseYI CCCAGC 1 cut(s) 366
BshFI GGCC 2 cut(s) 222, 361
BshNI GGYRCC 1 cut(s) 416
BshVI ATCGAT 1 cut(s) 258
BslFI GGGAC 2 cut(s) 498, 625
BslI CCNNNNNNNGG 6 cut(s) 124, 283, 608, 609, 757, 845
BsmAI GTCTC 3 cut(s) 384, 492, 556
BsmFI GGGAC 2 cut(s) 498, 625
BsnI GGCC 2 cut(s) 222, 361
Bsp143I GATC 4 cut(s) 259, 264, 733, 747
BspANI GGCC 2 cut(s) 222, 361
BspDI ATCGAT 1 cut(s) 258
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 223, 418
BspMI ACCTGC 2 cut(s) 149, 748
BspPI GGATC 1 cut(s) 742
BspT107I GGYRCC 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 3 cut(s) 204, 535, 850
BssECI CCNNGG 1 cut(s) 688
BssMI GATC 4 cut(s) 259, 264, 733, 747
BssSI CACGAG 1 cut(s) 333
BssT1I CCWWGG 1 cut(s) 688
Bst2BI CACGAG 1 cut(s) 333
Bst2UI CCWGG 1 cut(s) 278
Bst4CI ACNGT 2 cut(s) 301, 591
Bst6I CTCTTC 2 cut(s) 123, 276
BstAPI GCANNNNNTGC 1 cut(s) 329
BstC8I GCNNGC 4 cut(s) 216, 220, 402, 406
BstENI CCTNNNNNAGG 2 cut(s) 281, 755
BstF5I GGATG 2 cut(s) 376, 429
BstKTI GATC 4 cut(s) 262, 267, 736, 750
BstMAI GTCTC 3 cut(s) 384, 492, 556
BstMBI GATC 4 cut(s) 259, 264, 733, 747
BstMWI GCNNNNNNNGC 2 cut(s) 195, 329
BstNI CCWGG 1 cut(s) 278
BstSCI CCNGG 1 cut(s) 276
BstV1I GCAGC 3 cut(s) 50, 316, 784
BstX2I RGATCY 1 cut(s) 747
BstYI RGATCY 1 cut(s) 747
Bsu15I ATCGAT 1 cut(s) 258
BsuRI GGCC 2 cut(s) 222, 361
BsuTUI ATCGAT 1 cut(s) 258
BtgZI GCGATG 1 cut(s) 180
BtsCI GGATG 2 cut(s) 376, 429
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 7 cut(s) 57, 76, 211, 330, 418, 774, 843
BveI ACCTGC 2 cut(s) 149, 748
Cac8I GCNNGC 4 cut(s) 216, 220, 402, 406
CaiI CAGNNNCTG 1 cut(s) 329
CciI TCATGA 1 cut(s) 736
Cfr13I GGNCC 3 cut(s) 83, 221, 359
ClaI ATCGAT 1 cut(s) 258
Csp6I GTAC 1 cut(s) 556
CviAII CATG 3 cut(s) 53, 306, 737
CviQI GTAC 1 cut(s) 556
DpnI GATC 4 cut(s) 261, 266, 735, 749
DpnII GATC 4 cut(s) 259, 264, 733, 747
Eam1104I CTCTTC 2 cut(s) 123, 276
EarI CTCTTC 2 cut(s) 123, 276
Eco130I CCWWGG 1 cut(s) 688
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 1 cut(s) 394
EcoNI CCTNNNNNAGG 2 cut(s) 281, 755
EcoO109I RGGNCCY 2 cut(s) 221, 359
EcoRII CCWGG 1 cut(s) 276
EcoT14I CCWWGG 1 cut(s) 688
EcoT22I ATGCAT 1 cut(s) 172
ErhI CCWWGG 1 cut(s) 688
FaeI CATG 3 cut(s) 56, 309, 740
FaqI GGGAC 2 cut(s) 498, 625
FatI CATG 3 cut(s) 52, 305, 736
FauNDI CATATG 1 cut(s) 596
Fnu4HI GCNGC 3 cut(s) 39, 330, 798
FokI GGATG 2 cut(s) 383, 416
Fsp4HI GCNGC 3 cut(s) 39, 330, 798
FspBI CTAG 5 cut(s) 320, 363, 380, 704, 892
GluI GCNGC 3 cut(s) 39, 330, 798
GsaI CCCAGC 1 cut(s) 370
HaeIII GGCC 2 cut(s) 222, 361
Hin1II CATG 3 cut(s) 56, 309, 740
HincII GTYRAC 2 cut(s) 679, 886
HindII GTYRAC 2 cut(s) 679, 886
HindIII AAGCTT 1 cut(s) 406
HinfI GANTC 4 cut(s) 62, 338, 392, 582
HphI GGTGA 2 cut(s) 193, 829
Hpy166II GTNNAC 2 cut(s) 679, 886
Hpy188I TCNGA 3 cut(s) 264, 578, 712
Hpy188III TCNNGA 7 cut(s) 28, 95, 335, 351, 635, 737, 865
Hpy8I GTNNAC 2 cut(s) 679, 886
HpyAV CCTTC 3 cut(s) 7, 583, 734
HpyCH4III ACNGT 2 cut(s) 301, 591
HpyCH4V TGCA 6 cut(s) 158, 170, 347, 400, 532, 800
HpyF10VI GCNNNNNNNGC 2 cut(s) 195, 329
Hsp92II CATG 3 cut(s) 56, 309, 740
Kzo9I GATC 4 cut(s) 259, 264, 733, 747
LmnI GCTCC 2 cut(s) 7, 442
Lsp1109I GCAGC 3 cut(s) 50, 316, 784
LweI GCATC 4 cut(s) 157, 179, 207, 356
MaeI CTAG 5 cut(s) 320, 363, 380, 704, 892
MaeIII GTNAC 1 cut(s) 724
MalI GATC 4 cut(s) 261, 266, 735, 749
MboI GATC 4 cut(s) 259, 264, 733, 747
MboII GAAGA 5 cut(s) 140, 293, 591, 832, 880
MflI RGATCY 1 cut(s) 747
MluCI AATT 4 cut(s) 232, 442, 469, 871
MlyI GAGTC 1 cut(s) 386
MmeI TCCRAC 1 cut(s) 105
Mph1103I ATGCAT 1 cut(s) 172
MroXI GAANNNNTTC 1 cut(s) 788
MslI CAYNNNNRTG 2 cut(s) 537, 672
MspR9I CCNGG 1 cut(s) 278
MvaI CCWGG 1 cut(s) 278
MwoI GCNNNNNNNGC 2 cut(s) 195, 329
NdeI CATATG 1 cut(s) 596
NdeII GATC 4 cut(s) 259, 264, 733, 747
NlaIII CATG 3 cut(s) 56, 309, 740
NlaIV GGNNCC 2 cut(s) 223, 418
NmuCI GTSAC 1 cut(s) 724
NsiI ATGCAT 1 cut(s) 172
PagI TCATGA 1 cut(s) 736
PaqCI CACCTGC 1 cut(s) 748
PdmI GAANNNNTTC 1 cut(s) 788
PfeI GAWTC 3 cut(s) 62, 338, 582
PflMI CCANNNNNTGG 1 cut(s) 845
PfoI TCCNGGA 1 cut(s) 276
PkrI GCNGC 3 cut(s) 40, 331, 799
PleI GAGTC 1 cut(s) 386
PpsI GAGTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 276
PspFI CCCAGC 1 cut(s) 366
PspGI CCWGG 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 223, 418
PspPI GGNCC 3 cut(s) 83, 221, 359
PstNI CAGNNNCTG 1 cut(s) 329
PsuI RGATCY 1 cut(s) 747
RsaI GTAC 1 cut(s) 557
RsaNI GTAC 1 cut(s) 556
RseI CAYNNNNRTG 2 cut(s) 537, 672
SatI GCNGC 3 cut(s) 39, 330, 798
Sau3AI GATC 4 cut(s) 259, 264, 733, 747
Sau96I GGNCC 3 cut(s) 83, 221, 359
SchI GAGTC 1 cut(s) 386
ScrFI CCNGG 1 cut(s) 278
SfaNI GCATC 4 cut(s) 157, 179, 207, 356
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 537, 672
Sse9I AATT 4 cut(s) 232, 442, 469, 871
SspMI CTAG 5 cut(s) 320, 363, 380, 704, 892
StyD4I CCNGG 1 cut(s) 276
StyI CCWWGG 1 cut(s) 688
TaaI ACNGT 2 cut(s) 301, 591
TaqI TCGA 2 cut(s) 258, 350
TasI AATT 4 cut(s) 232, 442, 469, 871
TatI WGTACW 1 cut(s) 555
TfiI GAWTC 3 cut(s) 62, 338, 582
TscAI CASTG 7 cut(s) 64, 76, 211, 330, 418, 781, 850
TseFI GTSAC 1 cut(s) 724
TseI GCWGC 3 cut(s) 38, 329, 797
Tsp45I GTSAC 1 cut(s) 724
TspDTI ATGAA 4 cut(s) 41, 418, 555, 753
TspRI CASTG 7 cut(s) 64, 76, 211, 330, 418, 781, 850
Van91I CCANNNNNTGG 1 cut(s) 845
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 2 cut(s) 281, 755
XapI RAATTY 2 cut(s) 232, 442
XmnI GAANNNNTTC 1 cut(s) 788
XspI CTAG 5 cut(s) 320, 363, 380, 704, 892
Zsp2I ATGCAT 1 cut(s) 172
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.