Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8139090.1

Orthogroup ID

OG0009391

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 557

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8139090.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 332 bp

atgagaggagggcctagctgggatgtgtggctaggcaggagagactccctgcaagcaagcttcagtggtgccaaccagttcatccctgctccaaataactctctagaaactctcatttctaatttcaaacaacaaggacttgatatagaagacttggttgccttgtcaggtagccacacaattggaaaggcaagatgtttaagcttcaggcagagggtgtatgatgtgaacttcaaaggacagtacgaaatatacgataagtacaggaggtatacttccttccgaagaatcttacagtccatatgccccaaatcagggaggaacaatgattt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

110

Amino Acids

12.62

Weight (kDa)

9.69

Isoelectric Point (pI)

51.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35380 AT2G35380
fragaria_vesca	FvH4_5g21320 FvH4_5g21320
malus_domestica	MD06G1038800.v1.1
prunus_persica	Prupe.5G044000_v2.0.a1
pyrus_communis	pycom06g03260
rosa_chinensis	RchiOBHm_Chr5g0075581 RchiOBHm_Chr7g0208661
rosa_laevigata	RLG00000003203 RLG00000036579
rosa_multiflora	Rmu_co8139090.1_g000001 Rmu_sc0000072.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005990 Rroxscaffold_3G00250330
rosa_rugosa	Rorug05G0440900 Rorug07G0105300
rosa_samantha	Rh5DG530300 Rh7AG240300 Rh7DG246300
rosa_wichuraiana	Rw5G046160 Rw7G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	68
AccI	GTMKAC	1 cut(s)	272
AcuI	CTGAAG	2 cut(s)	46, 190
AfaI	GTAC	2 cut(s)	245, 263
AfiI	CCNNNNNNNGG	2 cut(s)	314, 315
AgsI	TTSAA	2 cut(s)	127, 235
AluBI	AGCT	3 cut(s)	18, 60, 204
AluI	AGCT	3 cut(s)	18, 60, 204
Alw26I	GTCTC	1 cut(s)	36
AoxI	GGCC	1 cut(s)	11
AspS9I	GGNCC	1 cut(s)	11
BanI	GGYRCC	1 cut(s)	68
BarI	GAAGNNNNNNTAC	2 cut(s)	263, 295
BbsI	GAAGAC	1 cut(s)	156
BcoDI	GTCTC	1 cut(s)	36
BfaI	CTAG	3 cut(s)	15, 32, 104
BmgT120I	GGNCC	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	70
BpiI	GAAGAC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	314, 315
Bse1I	ACTGG	1 cut(s)	76
BseGI	GGATG	2 cut(s)	28, 81
BseLI	CCNNNNNNNGG	2 cut(s)	314, 315
BseNI	ACTGG	1 cut(s)	76
BseRI	GAGGAG	1 cut(s)	21
BseYI	CCCAGC	1 cut(s)	18
BshFI	GGCC	1 cut(s)	13
BshNI	GGYRCC	1 cut(s)	68
BslI	CCNNNNNNNGG	2 cut(s)	314, 315
BsmAI	GTCTC	1 cut(s)	36
BsnI	GGCC	1 cut(s)	13
BspANI	GGCC	1 cut(s)	13
BspLI	GGNNCC	1 cut(s)	70
BspT107I	GGYRCC	1 cut(s)	68
BsrI	ACTGG	1 cut(s)	76
BssNAI	GTATAC	1 cut(s)	273
Bst1107I	GTATAC	1 cut(s)	273
Bst4CI	ACNGT	2 cut(s)	243, 297
BstC8I	GCNNGC	2 cut(s)	54, 58
BstF5I	GGATG	2 cut(s)	28, 81
BstMAI	GTCTC	1 cut(s)	36
BstV2I	GAAGAC	1 cut(s)	156
BstXI	CCANNNNNNTGG	1 cut(s)	182
BstZ17I	GTATAC	1 cut(s)	273
BsuRI	GGCC	1 cut(s)	13
BtsCI	GGATG	2 cut(s)	28, 81
BtsIMutI	CAGTG	1 cut(s)	70
Cac8I	GCNNGC	2 cut(s)	54, 58
Cfr13I	GGNCC	1 cut(s)	11
Csp6I	GTAC	2 cut(s)	244, 262
CviJI	RGCY	6 cut(s)	13, 18, 31, 60, 174, 204
CviKI_1	RGCY	6 cut(s)	13, 18, 31, 60, 174, 204
CviQI	GTAC	2 cut(s)	244, 262
Eco57I	CTGAAG	2 cut(s)	46, 190
EcoO109I	RGGNCCY	1 cut(s)	11
FaiI	YATR	6 cut(s)	146, 222, 253, 273, 302, 304
FauNDI	CATATG	1 cut(s)	302
FblI	GTMKAC	1 cut(s)	272
FokI	GGATG	2 cut(s)	35, 68
FspBI	CTAG	3 cut(s)	15, 32, 104
GsaI	CCCAGC	1 cut(s)	22
HaeIII	GGCC	1 cut(s)	13
HindIII	AAGCTT	2 cut(s)	58, 202
HinfI	GANTC	2 cut(s)	44, 288
Hpy166II	GTNNAC	2 cut(s)	229, 273
Hpy188I	TCNGA	1 cut(s)	284
Hpy188III	TCNNGA	1 cut(s)	104
Hpy8I	GTNNAC	2 cut(s)	229, 273
HpyAV	CCTTC	1 cut(s)	289
HpyCH4III	ACNGT	2 cut(s)	243, 297
HpyCH4V	TGCA	1 cut(s)	52
LmnI	GCTCC	1 cut(s)	94
LpnPI	CCDG	9 cut(s)	4, 22, 62, 89, 99, 153, 193, 250, 300
MaeI	CTAG	3 cut(s)	15, 32, 104
MboII	GAAGA	2 cut(s)	161, 297
MfeI	CAATTG	1 cut(s)	180
MluCI	AATT	2 cut(s)	121, 180
MlyI	GAGTC	1 cut(s)	38
MnlI	CCTC	3 cut(s)	207, 261, 312
MseI	TTAA	1 cut(s)	200
MunI	CAATTG	1 cut(s)	180
NdeI	CATATG	1 cut(s)	302
NlaIV	GGNNCC	1 cut(s)	70
PcsI	WCGNNNNNNNCGW	1 cut(s)	252
PfeI	GAWTC	1 cut(s)	288
PleI	GAGTC	1 cut(s)	38
PpsI	GAGTC	1 cut(s)	38
PspFI	CCCAGC	1 cut(s)	18
PspN4I	GGNNCC	1 cut(s)	70
PspPI	GGNCC	1 cut(s)	11
RsaI	GTAC	2 cut(s)	245, 263
RsaNI	GTAC	2 cut(s)	244, 262
SaqAI	TTAA	1 cut(s)	200
Sau96I	GGNCC	1 cut(s)	11
SchI	GAGTC	1 cut(s)	38
SetI	ASST	5 cut(s)	20, 62, 172, 206, 272
Sse9I	AATT	2 cut(s)	121, 180
SspMI	CTAG	3 cut(s)	15, 32, 104
TaaI	ACNGT	2 cut(s)	243, 297
TasI	AATT	2 cut(s)	121, 180
TatI	WGTACW	1 cut(s)	261
TfiI	GAWTC	1 cut(s)	288
Tru1I	TTAA	1 cut(s)	200
Tru9I	TTAA	1 cut(s)	200
TscAI	CASTG	1 cut(s)	70
TspDTI	ATGAA	1 cut(s)	70
TspRI	CASTG	1 cut(s)	70
XbaI	TCTAGA	1 cut(s)	103
XmiI	GTMKAC	1 cut(s)	272
XspI	CTAG	3 cut(s)	15, 32, 104

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.