Rw5G046160

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0009391
Physical Location & Seq
Forward (+)
80242630 .. 80244594
1965 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G046160.1

Sequence Viewer

Length: 1002 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTGGTAGCAATGGTCTTTCATGGCACTGAATCTTTAAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAGTGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGTTTTGGAGGTATTACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTTATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCCCTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATAACTCTCTAGAAACTCTCATTTCTAATTTCAAACAACAAGGACTTGATATAGAAGACTTGGTTACCTTCCACACAATTGGAAAGGCAAGATGTTTAAGCTTCAGGCAGAGGGTGTATGATGTGAACTTCAAAGGACAGTACGAAATATACGATAAATACAGGAGGTATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACTCCAGCCAGATTTGACAATCATTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGGTTCTGATACTGTATTGGTCACACAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTTCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAGTTGTAGGTTTGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

333

Amino Acids

37.55

Weight (kDa)

6.19

Isoelectric Point (pI)

43.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 291 9e-75 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 856
Acc36I ACCTGC 1 cut(s) 856
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 953
AccI GTMKAC 1 cut(s) 674
AclWI GGATC 2 cut(s) 161, 850
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 457, 592
AfaI GTAC 1 cut(s) 647
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 716, 717, 865, 953
AgsI TTSAA 3 cut(s) 149, 538, 637
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 429, 471, 606
AluI AGCT 3 cut(s) 429, 471, 606
Alw26I GTCTC 1 cut(s) 447
AlwI GGATC 2 cut(s) 161, 850
AoxI GGCC 2 cut(s) 283, 422
ApeKI GCWGC 2 cut(s) 179, 392
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 896
AspS9I GGNCC 3 cut(s) 80, 284, 422
AsuHPI GGTGA 1 cut(s) 937
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 479
BarI GAAGNNNNNNTAC 2 cut(s) 665, 697
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 567
BbvI GCAGC 2 cut(s) 166, 379
BccI CCATC 2 cut(s) 71, 925
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 447
BfaI CTAG 6 cut(s) 383, 426, 443, 515, 812, 1000
BfuAI ACCTGC 1 cut(s) 856
BisI GCNGC 2 cut(s) 180, 393
BlsI GCNGC 2 cut(s) 181, 394
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 3 cut(s) 80, 284, 422
BmiI GGNNCC 2 cut(s) 286, 481
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 220, 242, 419
BpiI GAAGAC 1 cut(s) 567
BpmI CTGGAG 1 cut(s) 741
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 796
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 716, 717, 865, 953
Bse1I ACTGG 3 cut(s) 267, 487, 958
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 796
BseGI GGATG 2 cut(s) 439, 492
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 716, 717, 865, 953
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 267, 487, 958
BseRI GAGGAG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 166, 379
BseYI CCCAGC 1 cut(s) 429
BshFI GGCC 2 cut(s) 285, 424
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 716, 717, 865, 953
BsmAI GTCTC 1 cut(s) 447
BsnI GGCC 2 cut(s) 285, 424
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 166, 322, 327, 841, 855
BspANI GGCC 2 cut(s) 285, 424
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 2 cut(s) 205, 844
BspLI GGNNCC 2 cut(s) 286, 481
BspMI ACCTGC 1 cut(s) 856
BspPI GGATC 2 cut(s) 161, 850
BspT107I GGYRCC 1 cut(s) 479
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 267, 487, 958
BssECI CCNNGG 1 cut(s) 796
BssMI GATC 5 cut(s) 166, 322, 327, 841, 855
BssNAI GTATAC 1 cut(s) 675
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 796
Bst1107I GTATAC 1 cut(s) 675
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 364, 645, 699, 826
Bst6I CTCTTC 3 cut(s) 120, 339, 971
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
BstEII GGTNACC 1 cut(s) 568
BstENI CCTNNNNNAGG 2 cut(s) 344, 863
BstF5I GGATG 2 cut(s) 439, 492
BstKTI GATC 5 cut(s) 169, 325, 330, 844, 858
BstMAI GTCTC 1 cut(s) 447
BstMBI GATC 5 cut(s) 166, 322, 327, 841, 855
BstMWI GCNNNNNNNGC 2 cut(s) 392, 911
BstNI CCWGG 1 cut(s) 341
BstPI GGTNACC 1 cut(s) 568
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 166, 379
BstV2I GAAGAC 1 cut(s) 567
BstX2I RGATCY 2 cut(s) 166, 855
BstXI CCANNNNNNTGG 1 cut(s) 584
BstYI RGATCY 2 cut(s) 166, 855
BstZ17I GTATAC 1 cut(s) 675
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 285, 424
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 2 cut(s) 439, 492
BtsIMutI CAGTG 5 cut(s) 54, 274, 481, 882, 951
BveI ACCTGC 1 cut(s) 856
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
CciI TCATGA 2 cut(s) 205, 844
Cfr13I GGNCC 3 cut(s) 80, 284, 422
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 646
CviAII CATG 5 cut(s) 50, 206, 220, 369, 845
CviQI GTAC 1 cut(s) 646
DpnI GATC 5 cut(s) 168, 324, 329, 843, 857
DpnII GATC 5 cut(s) 166, 322, 327, 841, 855
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 3 cut(s) 120, 339, 971
EarI CTCTTC 3 cut(s) 120, 339, 971
Eco130I CCWWGG 1 cut(s) 796
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 457, 592
Eco91I GGTNACC 1 cut(s) 568
EcoNI CCTNNNNNAGG 2 cut(s) 344, 863
EcoO109I RGGNCCY 2 cut(s) 284, 422
EcoO65I GGTNACC 1 cut(s) 568
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 796
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 796
FaeI CATG 5 cut(s) 53, 209, 223, 372, 848
FatI CATG 5 cut(s) 49, 205, 219, 368, 844
FauNDI CATATG 1 cut(s) 704
FblI GTMKAC 1 cut(s) 674
Fnu4HI GCNGC 2 cut(s) 180, 393
FokI GGATG 2 cut(s) 446, 479
Fsp4HI GCNGC 2 cut(s) 180, 393
FspBI CTAG 6 cut(s) 383, 426, 443, 515, 812, 1000
GluI GCNGC 2 cut(s) 180, 393
GsaI CCCAGC 1 cut(s) 433
GsuI CTGGAG 1 cut(s) 741
HaeIII GGCC 2 cut(s) 285, 424
Hin1II CATG 5 cut(s) 53, 209, 223, 372, 848
HincII GTYRAC 2 cut(s) 787, 994
HindII GTYRAC 2 cut(s) 787, 994
HindIII AAGCTT 2 cut(s) 469, 604
HinfI GANTC 5 cut(s) 59, 401, 455, 690, 754
HphI GGTGA 1 cut(s) 937
Hpy166II GTNNAC 4 cut(s) 631, 675, 787, 994
Hpy188I TCNGA 3 cut(s) 327, 686, 820
Hpy188III TCNNGA 9 cut(s) 25, 92, 206, 398, 414, 515, 743, 845, 973
Hpy8I GTNNAC 4 cut(s) 631, 675, 787, 994
HpyAV CCTTC 5 cut(s) 4, 200, 583, 691, 842
HpyCH4III ACNGT 4 cut(s) 364, 645, 699, 826
HpyCH4V TGCA 6 cut(s) 155, 199, 233, 410, 463, 914
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 911
Hsp92II CATG 5 cut(s) 53, 209, 223, 372, 848
Kzo9I GATC 5 cut(s) 166, 322, 327, 841, 855
LmnI GCTCC 2 cut(s) 4, 505
Lsp1109I GCAGC 2 cut(s) 166, 379
LweI GCATC 3 cut(s) 220, 242, 419
MaeI CTAG 6 cut(s) 383, 426, 443, 515, 812, 1000
MaeIII GTNAC 2 cut(s) 568, 832
MalI GATC 5 cut(s) 168, 324, 329, 843, 857
MboI GATC 5 cut(s) 166, 322, 327, 841, 855
MboII GAAGA 6 cut(s) 137, 356, 572, 699, 940, 988
MfeI CAATTG 1 cut(s) 582
MflI RGATCY 2 cut(s) 166, 855
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 3 cut(s) 295, 532, 582
MlyI GAGTC 2 cut(s) 449, 748
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 896
MseI TTAA 3 cut(s) 65, 162, 602
MslI CAYNNNNRTG 2 cut(s) 204, 780
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 582
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 392, 911
NdeI CATATG 1 cut(s) 704
NdeII GATC 5 cut(s) 166, 322, 327, 841, 855
NlaIII CATG 5 cut(s) 53, 209, 223, 372, 848
NlaIV GGNNCC 2 cut(s) 286, 481
NmuCI GTSAC 1 cut(s) 832
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 2 cut(s) 205, 844
PaqCI CACCTGC 1 cut(s) 856
PcsI WCGNNNNNNNCGW 1 cut(s) 654
PdmI GAANNNNTTC 1 cut(s) 896
PfeI GAWTC 3 cut(s) 59, 401, 690
PflMI CCANNNNNTGG 1 cut(s) 953
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 181, 394
PleI GAGTC 2 cut(s) 449, 748
PpsI GAGTC 2 cut(s) 449, 748
Psp6I CCWGG 1 cut(s) 339
PspEI GGTNACC 1 cut(s) 568
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 286, 481
PspPI GGNCC 3 cut(s) 80, 284, 422
PsuI RGATCY 2 cut(s) 166, 855
RsaI GTAC 1 cut(s) 647
RsaNI GTAC 1 cut(s) 646
RseI CAYNNNNRTG 2 cut(s) 204, 780
SaqAI TTAA 3 cut(s) 65, 162, 602
SatI GCNGC 2 cut(s) 180, 393
Sau3AI GATC 5 cut(s) 166, 322, 327, 841, 855
Sau96I GGNCC 3 cut(s) 80, 284, 422
SchI GAGTC 2 cut(s) 449, 748
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 3 cut(s) 220, 242, 419
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 204, 780
Sse9I AATT 3 cut(s) 295, 532, 582
SspMI CTAG 6 cut(s) 383, 426, 443, 515, 812, 1000
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 796
TaaI ACNGT 4 cut(s) 364, 645, 699, 826
TaqI TCGA 3 cut(s) 172, 321, 413
TasI AATT 3 cut(s) 295, 532, 582
TfiI GAWTC 3 cut(s) 59, 401, 690
Tru1I TTAA 3 cut(s) 65, 162, 602
Tru9I TTAA 3 cut(s) 65, 162, 602
TscAI CASTG 5 cut(s) 61, 274, 481, 889, 958
TseFI GTSAC 1 cut(s) 832
TseI GCWGC 2 cut(s) 179, 392
Tsp45I GTSAC 1 cut(s) 832
TspDTI ATGAA 5 cut(s) 38, 194, 481, 861, 897
TspRI CASTG 5 cut(s) 61, 274, 481, 889, 958
Van91I CCANNNNNTGG 1 cut(s) 953
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 2 cut(s) 344, 863
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 674
XmnI GAANNNNTTC 1 cut(s) 896
XspI CTAG 6 cut(s) 383, 426, 443, 515, 812, 1000
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.