FvH4_5g21320

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0009391
Physical Location & Seq
Forward (+)
12859354 .. 12861130
1777 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g21320.t1

Sequence Viewer

Length: 1014 bp
ATGATGGAGCAGAAGGGGAGGATATTCTTAATTTTGGTTGCAATGGTTTTTCATGGAACTGAATCTTTCAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAACAAAAGTGCCCTTTGTTGGAAGAGATTGTGAGTCACAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGGATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGACGCATCTGTTCTTTTAGACAGCTTTGGAGGCATAACTAGTGAAAAGCAAGCAGGCCCTAACCTAAATTCTTTACGAGGATTTGAGGTAATCGATCAGATCAAATATCTCCTTGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCCGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCCTTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATTCATCTCTCGAAGCTCTCATTTCCAATTTCAAACAACAAGGACTTGATATAGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGTTGTATGATGTGAACTTCAGAGGACAGTATGAACTATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTATCACCTCTTGATTTTATGACACCAGCCAGATTTGACAATCACTATTATGTCAACCTGCTCCAAGGAAAAGGTTTGCTGATTTCTGATAATGTATTGGTGACACAAGATCATGAAGGAGAGATTCTAAAGAAGGTGTGGGATTATGCCACTGATGAGAAACTTTTTTTTGCTTCATTTGCAAATTCTATGGTGAAGATGGGAAACATCAAACCCATCACTGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTTGTAAACACCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

338

Amino Acids

37.92

Weight (kDa)

6.66

Isoelectric Point (pI)

40.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 47 - 294 2.9e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 810
AccB1I GGYRCC 1 cut(s) 482
AclWI GGATC 1 cut(s) 164
AcsI RAATTY 3 cut(s) 298, 508, 928
AcuI CTGAAG 3 cut(s) 460, 604, 631
AfaI GTAC 1 cut(s) 677
AfiI CCNNNNNNNGG 5 cut(s) 124, 349, 728, 729, 965
AgsI TTSAA 3 cut(s) 152, 347, 541
AhlI ACTAGT 1 cut(s) 269
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 4 cut(s) 255, 432, 474, 524
AluI AGCT 4 cut(s) 255, 432, 474, 524
Alw26I GTCTC 2 cut(s) 450, 558
AlwI GGATC 1 cut(s) 164
AoxI GGCC 2 cut(s) 286, 425
ApeKI GCWGC 2 cut(s) 182, 395
ApoI RAATTY 3 cut(s) 298, 508, 928
AspS9I GGNCC 3 cut(s) 83, 287, 425
AsuHPI GGTGA 3 cut(s) 741, 856, 949
AvaII GGWCC 1 cut(s) 83
BaeGI GKGCMC 1 cut(s) 119
BanI GGYRCC 1 cut(s) 482
BauI CACGAG 1 cut(s) 399
BbvI GCAGC 2 cut(s) 169, 382
BccI CCATC 4 cut(s) 74, 172, 937, 968
BcoDI GTCTC 2 cut(s) 450, 558
BcuI ACTAGT 1 cut(s) 269
BfaI CTAG 4 cut(s) 270, 386, 429, 446
BfuAI ACCTGC 1 cut(s) 810
BisI GCNGC 2 cut(s) 183, 396
BlsI GCNGC 2 cut(s) 184, 397
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 3 cut(s) 83, 287, 425
BmiI GGNNCC 1 cut(s) 484
BmsI GCATC 2 cut(s) 245, 422
Bsa29I ATCGAT 1 cut(s) 324
BsaJI CCNNGG 2 cut(s) 173, 808
BsaXI ACNNNNNCTCC 2 cut(s) 555, 585
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 349, 728, 729, 965
Bse1I ACTGG 2 cut(s) 490, 970
Bse3DI GCAATG 1 cut(s) 48
BseCI ATCGAT 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 173, 808
BseGI GGATG 3 cut(s) 183, 442, 495
BseLI CCNNNNNNNGG 5 cut(s) 124, 349, 728, 729, 965
BseMI GCAATG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 490, 970
BseRI GAGGAG 1 cut(s) 435
BseSI GKGCMC 1 cut(s) 119
BseXI GCAGC 2 cut(s) 169, 382
BseYI CCCAGC 1 cut(s) 432
BshFI GGCC 2 cut(s) 288, 427
BshNI GGYRCC 1 cut(s) 482
BshVI ATCGAT 1 cut(s) 324
BslI CCNNNNNNNGG 5 cut(s) 124, 349, 728, 729, 965
BsmAI GTCTC 2 cut(s) 450, 558
BsnI GGCC 2 cut(s) 288, 427
Bsp1286I GDGCHC 1 cut(s) 119
Bsp143I GATC 4 cut(s) 169, 325, 330, 853
BspANI GGCC 2 cut(s) 288, 427
BspDI ATCGAT 1 cut(s) 324
BspHI TCATGA 2 cut(s) 208, 856
BspLI GGNNCC 1 cut(s) 484
BspMI ACCTGC 1 cut(s) 810
BspPI GGATC 1 cut(s) 164
BspT107I GGYRCC 1 cut(s) 482
BsrDI GCAATG 1 cut(s) 48
BsrI ACTGG 2 cut(s) 490, 970
BssECI CCNNGG 2 cut(s) 173, 808
BssMI GATC 4 cut(s) 169, 325, 330, 853
BssSI CACGAG 1 cut(s) 399
BssT1I CCWWGG 1 cut(s) 808
Bst2BI CACGAG 1 cut(s) 399
Bst4CI ACNGT 3 cut(s) 367, 657, 711
Bst6I CTCTTC 2 cut(s) 123, 342
BstAPI GCANNNNNTGC 1 cut(s) 395
BstC8I GCNNGC 5 cut(s) 200, 282, 286, 468, 472
BstENI CCTNNNNNAGG 1 cut(s) 347
BstF5I GGATG 3 cut(s) 183, 442, 495
BstKTI GATC 4 cut(s) 172, 328, 333, 856
BstMAI GTCTC 2 cut(s) 450, 558
BstMBI GATC 4 cut(s) 169, 325, 330, 853
BstMWI GCNNNNNNNGC 3 cut(s) 261, 395, 923
BstSLI GKGCMC 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 169, 382
BstX2I RGATCY 1 cut(s) 169
BstXI CCANNNNNNTGG 1 cut(s) 596
BstYI RGATCY 1 cut(s) 169
Bsu15I ATCGAT 1 cut(s) 324
BsuRI GGCC 2 cut(s) 288, 427
BsuTUI ATCGAT 1 cut(s) 324
BtsCI GGATG 3 cut(s) 183, 442, 495
BtsIMutI CAGTG 4 cut(s) 76, 484, 894, 963
BveI ACCTGC 1 cut(s) 810
Cac8I GCNNGC 5 cut(s) 200, 282, 286, 468, 472
CciI TCATGA 2 cut(s) 208, 856
Cfr13I GGNCC 3 cut(s) 83, 287, 425
ClaI ATCGAT 1 cut(s) 324
CseI GACGC 1 cut(s) 242
Csp6I GTAC 1 cut(s) 676
CviAII CATG 5 cut(s) 53, 209, 223, 372, 857
CviQI GTAC 1 cut(s) 676
DpnI GATC 4 cut(s) 171, 327, 332, 855
DpnII GATC 4 cut(s) 169, 325, 330, 853
DraI TTTAAA 2 cut(s) 166, 615
Eam1104I CTCTTC 2 cut(s) 123, 342
EarI CTCTTC 2 cut(s) 123, 342
Eco130I CCWWGG 1 cut(s) 808
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 460, 604, 631
EcoNI CCTNNNNNAGG 1 cut(s) 347
EcoO109I RGGNCCY 2 cut(s) 287, 425
EcoT14I CCWWGG 1 cut(s) 808
ErhI CCWWGG 1 cut(s) 808
FaeI CATG 5 cut(s) 56, 212, 226, 375, 860
FatI CATG 5 cut(s) 52, 208, 222, 371, 856
FauNDI CATATG 1 cut(s) 716
Fnu4HI GCNGC 2 cut(s) 183, 396
FokI GGATG 3 cut(s) 190, 449, 482
Fsp4HI GCNGC 2 cut(s) 183, 396
FspBI CTAG 4 cut(s) 270, 386, 429, 446
GluI GCNGC 2 cut(s) 183, 396
GsaI CCCAGC 1 cut(s) 436
HaeIII GGCC 2 cut(s) 288, 427
HgaI GACGC 1 cut(s) 242
Hin1II CATG 5 cut(s) 56, 212, 226, 375, 860
HincII GTYRAC 1 cut(s) 799
HindII GTYRAC 1 cut(s) 799
HindIII AAGCTT 1 cut(s) 472
HinfI GANTC 6 cut(s) 62, 139, 404, 458, 702, 868
HphI GGTGA 3 cut(s) 741, 856, 949
Hpy166II GTNNAC 3 cut(s) 643, 799, 1006
Hpy188I TCNGA 5 cut(s) 177, 330, 650, 698, 832
Hpy188III TCNNGA 8 cut(s) 95, 209, 401, 417, 518, 755, 857, 985
Hpy8I GTNNAC 3 cut(s) 643, 799, 1006
Hpy99I CGWCG 1 cut(s) 236
HpyAV CCTTC 5 cut(s) 7, 203, 703, 854, 871
HpyCH4III ACNGT 3 cut(s) 367, 657, 711
HpyCH4V TGCA 6 cut(s) 41, 158, 202, 413, 466, 926
HpyF10VI GCNNNNNNNGC 3 cut(s) 261, 395, 923
Hsp92II CATG 5 cut(s) 56, 212, 226, 375, 860
Kzo9I GATC 4 cut(s) 169, 325, 330, 853
LmnI GCTCC 3 cut(s) 7, 508, 810
Lsp1109I GCAGC 2 cut(s) 169, 382
LweI GCATC 2 cut(s) 245, 422
MaeI CTAG 4 cut(s) 270, 386, 429, 446
MaeIII GTNAC 2 cut(s) 140, 844
MalI GATC 4 cut(s) 171, 327, 332, 855
MboI GATC 4 cut(s) 169, 325, 330, 853
MboII GAAGA 5 cut(s) 140, 359, 711, 952, 1000
MfeI CAATTG 1 cut(s) 594
MflI RGATCY 1 cut(s) 169
MhlI GDGCHC 1 cut(s) 119
MluCI AATT 7 cut(s) 30, 298, 508, 535, 594, 928, 991
MlyI GAGTC 2 cut(s) 148, 452
MmeI TCCRAC 1 cut(s) 105
MseI TTAA 3 cut(s) 29, 165, 614
MslI CAYNNNNRTG 2 cut(s) 207, 792
MssI GTTTAAAC 1 cut(s) 615
MunI CAATTG 1 cut(s) 594
MwoI GCNNNNNNNGC 3 cut(s) 261, 395, 923
NdeI CATATG 1 cut(s) 716
NdeII GATC 4 cut(s) 169, 325, 330, 853
NlaIII CATG 5 cut(s) 56, 212, 226, 375, 860
NlaIV GGNNCC 1 cut(s) 484
NmuCI GTSAC 2 cut(s) 140, 844
PagI TCATGA 2 cut(s) 208, 856
PfeI GAWTC 4 cut(s) 62, 404, 702, 868
PkrI GCNGC 2 cut(s) 184, 397
PleI GAGTC 2 cut(s) 147, 452
PmeI GTTTAAAC 1 cut(s) 615
PpsI GAGTC 2 cut(s) 147, 452
PspFI CCCAGC 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 484
PspPI GGNCC 3 cut(s) 83, 287, 425
PsuI RGATCY 1 cut(s) 169
RsaI GTAC 1 cut(s) 677
RsaNI GTAC 1 cut(s) 676
RseI CAYNNNNRTG 2 cut(s) 207, 792
SaqAI TTAA 3 cut(s) 29, 165, 614
SatI GCNGC 2 cut(s) 183, 396
Sau3AI GATC 4 cut(s) 169, 325, 330, 853
Sau96I GGNCC 3 cut(s) 83, 287, 425
SchI GAGTC 2 cut(s) 148, 452
SduI GDGCHC 1 cut(s) 119
SfaNI GCATC 2 cut(s) 245, 422
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 207, 792
SpeI ACTAGT 1 cut(s) 269
Sse9I AATT 7 cut(s) 30, 298, 508, 535, 594, 928, 991
SspMI CTAG 4 cut(s) 270, 386, 429, 446
StyI CCWWGG 1 cut(s) 808
TaaI ACNGT 3 cut(s) 367, 657, 711
TaqI TCGA 3 cut(s) 324, 416, 519
TasI AATT 7 cut(s) 30, 298, 508, 535, 594, 928, 991
TatI WGTACW 1 cut(s) 675
TfiI GAWTC 4 cut(s) 62, 404, 702, 868
Tru1I TTAA 3 cut(s) 29, 165, 614
Tru9I TTAA 3 cut(s) 29, 165, 614
TscAI CASTG 4 cut(s) 76, 484, 901, 970
TseFI GTSAC 2 cut(s) 140, 844
TseI GCWGC 2 cut(s) 182, 395
Tsp45I GTSAC 2 cut(s) 140, 844
TspDTI ATGAA 7 cut(s) 41, 197, 484, 501, 675, 873, 909
TspGWI ACGGA 1 cut(s) 397
TspRI CASTG 4 cut(s) 76, 484, 901, 970
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 347
XapI RAATTY 3 cut(s) 298, 508, 928
XspI CTAG 4 cut(s) 270, 386, 429, 446
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.