Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0009391

Physical Location & Seq

Genomic Coordinates Reverse (-)

81855056 .. 81856963

Gene Structure 1908 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG530300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGAGCAGAAGGGGAGGATATTCTTGATTTTGGTAGCAATGGCCTTTCATGGCACTGAATCTTTAAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAGTGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGTTTTGGAGGCATAACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTTATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCAAGATGATATGATAGATGCATGTAACATTACTATTTTACTAATTGCACTTCTTTTCTTTCTTGAAAAGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCCCTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATAACTCTCTAGAAACTCTCATTTCCAATTTCAAACAACAAGGACTTGATATAGAAGACTTGGTTGCCTTGTCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAGCTTCAGGCAGAGGGTGTATGATGTTAACTTCAAAGGACAGTACGAAATATACGATAAGTACAGGAGGTATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTAGATTTTATGACACCAGCCAGATTTGACAATCATTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTGGGTTCTGATACTGTATTGGTTACACAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTTCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAGTTGTAGGTTTGTCAACACCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00940 ko01100 ko01110 map00940 map01100 map01110

Pfam Domains

Protein Families

peroxidase

Protein Analysis

368

Amino Acids

41.36

Weight (kDa)

5.71

Isoelectric Point (pI)

45.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
peroxidase	PF00141	45 - 146	2.3e-37	Peroxidase
peroxidase	PF00141	167 - 326	1.4e-38	Peroxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009391)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G35380 AT2G35380
fragaria_vesca	FvH4_5g21320 FvH4_5g21320
malus_domestica	MD06G1038800.v1.1
prunus_persica	Prupe.5G044000_v2.0.a1
pyrus_communis	pycom06g03260
rosa_chinensis	RchiOBHm_Chr5g0075581 RchiOBHm_Chr7g0208661
rosa_laevigata	RLG00000003203 RLG00000036579
rosa_multiflora	Rmu_co8139090.1_g000001 Rmu_sc0000072.1_g000004
rosa_roxburghii	Rroxscaffold_1G00005990 Rroxscaffold_3G00250330
rosa_rugosa	Rorug05G0440900 Rorug07G0105300
rosa_samantha	Rh5DG530300 Rh7AG240300 Rh7DG246300
rosa_wichuraiana	Rw5G046160 Rw7G020390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	961
Acc36I	ACCTGC	1 cut(s)	961
AccB1I	GGYRCC	1 cut(s)	575
AccB7I	CCANNNNNTGG	1 cut(s)	1058
AccI	GTMKAC	1 cut(s)	779
AclWI	GGATC	2 cut(s)	161, 955
AcsI	RAATTY	1 cut(s)	295
AcuI	CTGAAG	2 cut(s)	553, 697
AfaI	GTAC	2 cut(s)	752, 770
AfiI	CCNNNNNNNGG	6 cut(s)	121, 346, 821, 822, 970, 1058
AgsI	TTSAA	4 cut(s)	149, 506, 634, 742
AjnI	CCWGG	1 cut(s)	339
AloI	GAACNNNNNNTCC	2 cut(s)	72, 104
AluBI	AGCT	4 cut(s)	429, 525, 567, 711
AluI	AGCT	4 cut(s)	429, 525, 567, 711
Alw26I	GTCTC	1 cut(s)	543
AlwI	GGATC	2 cut(s)	161, 955
AoxI	GGCC	4 cut(s)	42, 283, 422, 518
ApeKI	GCWGC	2 cut(s)	179, 392
ApoI	RAATTY	1 cut(s)	295
Asp700I	GAANNNNTTC	1 cut(s)	1001
AspS9I	GGNCC	4 cut(s)	80, 284, 422, 518
AsuHPI	GGTGA	1 cut(s)	1042
AvaII	GGWCC	1 cut(s)	80
BaeGI	GKGCMC	1 cut(s)	116
BanI	GGYRCC	1 cut(s)	575
BarI	GAAGNNNNNNTAC	2 cut(s)	770, 802
BauI	CACGAG	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	663
BbvI	GCAGC	2 cut(s)	166, 379
BccI	CCATC	2 cut(s)	71, 1030
BciT130I	CCWGG	1 cut(s)	341
BcoDI	GTCTC	1 cut(s)	543
BfaI	CTAG	7 cut(s)	383, 426, 522, 539, 611, 848, 1105
BfuAI	ACCTGC	1 cut(s)	961
BisI	GCNGC	2 cut(s)	180, 393
BlsI	GCNGC	2 cut(s)	181, 394
Bme1390I	CCNGG	1 cut(s)	341
Bme18I	GGWCC	1 cut(s)	80
BmgT120I	GGNCC	4 cut(s)	80, 284, 422, 518
BmiI	GGNNCC	2 cut(s)	286, 577
BmrFI	CCNGG	1 cut(s)	341
BmsI	GCATC	4 cut(s)	220, 242, 419, 448
BpiI	GAAGAC	1 cut(s)	663
Bsa29I	ATCGAT	1 cut(s)	321
BsaJI	CCNNGG	1 cut(s)	901
Bsc4I	CCNNNNNNNGG	6 cut(s)	121, 346, 821, 822, 970, 1058
Bse1I	ACTGG	3 cut(s)	267, 583, 1063
Bse3DI	GCAATG	1 cut(s)	45
BseBI	CCWGG	1 cut(s)	341
BseCI	ATCGAT	1 cut(s)	321
BseDI	CCNNGG	1 cut(s)	901
BseGI	GGATG	3 cut(s)	439, 535, 588
BseLI	CCNNNNNNNGG	6 cut(s)	121, 346, 821, 822, 970, 1058
BseMI	GCAATG	1 cut(s)	45
BseNI	ACTGG	3 cut(s)	267, 583, 1063
BseRI	GAGGAG	2 cut(s)	432, 528
BseSI	GKGCMC	1 cut(s)	116
BseXI	GCAGC	2 cut(s)	166, 379
BseYI	CCCAGC	3 cut(s)	429, 525, 916
BshFI	GGCC	4 cut(s)	44, 285, 424, 520
BshNI	GGYRCC	1 cut(s)	575
BshVI	ATCGAT	1 cut(s)	321
BslI	CCNNNNNNNGG	6 cut(s)	121, 346, 821, 822, 970, 1058
BsmAI	GTCTC	1 cut(s)	543
BsnI	GGCC	4 cut(s)	44, 285, 424, 520
Bsp1286I	GDGCHC	1 cut(s)	116
Bsp143I	GATC	5 cut(s)	166, 322, 327, 946, 960
BspANI	GGCC	4 cut(s)	44, 285, 424, 520
BspDI	ATCGAT	1 cut(s)	321
BspHI	TCATGA	2 cut(s)	205, 949
BspLI	GGNNCC	2 cut(s)	286, 577
BspMI	ACCTGC	1 cut(s)	961
BspPI	GGATC	2 cut(s)	161, 955
BspT107I	GGYRCC	1 cut(s)	575
BsrDI	GCAATG	1 cut(s)	45
BsrI	ACTGG	3 cut(s)	267, 583, 1063
BssECI	CCNNGG	1 cut(s)	901
BssMI	GATC	5 cut(s)	166, 322, 327, 946, 960
BssNAI	GTATAC	1 cut(s)	780
BssSI	CACGAG	1 cut(s)	396
BssT1I	CCWWGG	1 cut(s)	901
Bst1107I	GTATAC	1 cut(s)	780
Bst2BI	CACGAG	1 cut(s)	396
Bst2UI	CCWGG	1 cut(s)	341
Bst4CI	ACNGT	4 cut(s)	364, 750, 804, 931
Bst6I	CTCTTC	3 cut(s)	120, 339, 1076
BstAPI	GCANNNNNTGC	1 cut(s)	392
BstC8I	GCNNGC	5 cut(s)	197, 279, 283, 561, 565
BstENI	CCTNNNNNAGG	2 cut(s)	344, 968
BstF5I	GGATG	3 cut(s)	439, 535, 588
BstKTI	GATC	5 cut(s)	169, 325, 330, 949, 963
BstMAI	GTCTC	1 cut(s)	543
BstMBI	GATC	5 cut(s)	166, 322, 327, 946, 960
BstMWI	GCNNNNNNNGC	2 cut(s)	392, 1016
BstNI	CCWGG	1 cut(s)	341
BstNSI	RCATGY	1 cut(s)	465
BstSCI	CCNGG	1 cut(s)	339
BstSLI	GKGCMC	1 cut(s)	116
BstV1I	GCAGC	2 cut(s)	166, 379
BstV2I	GAAGAC	1 cut(s)	663
BstX2I	RGATCY	2 cut(s)	166, 960
BstXI	CCANNNNNNTGG	1 cut(s)	689
BstYI	RGATCY	2 cut(s)	166, 960
BstZ17I	GTATAC	1 cut(s)	780
Bsu15I	ATCGAT	1 cut(s)	321
BsuRI	GGCC	4 cut(s)	44, 285, 424, 520
BsuTUI	ATCGAT	1 cut(s)	321
BtgZI	GCGATG	1 cut(s)	243
BtsCI	GGATG	3 cut(s)	439, 535, 588
BtsIMutI	CAGTG	5 cut(s)	54, 274, 577, 987, 1056
BveI	ACCTGC	1 cut(s)	961
Cac8I	GCNNGC	5 cut(s)	197, 279, 283, 561, 565
CciI	TCATGA	2 cut(s)	205, 949
Cfr13I	GGNCC	4 cut(s)	80, 284, 422, 518
ClaI	ATCGAT	1 cut(s)	321
Csp6I	GTAC	2 cut(s)	751, 769
CviAII	CATG	6 cut(s)	50, 206, 220, 369, 462, 950
CviQI	GTAC	2 cut(s)	751, 769
DpnI	GATC	5 cut(s)	168, 324, 329, 948, 962
DpnII	GATC	5 cut(s)	166, 322, 327, 946, 960
DraI	TTTAAA	1 cut(s)	163
Eam1104I	CTCTTC	3 cut(s)	120, 339, 1076
EarI	CTCTTC	3 cut(s)	120, 339, 1076
Eco130I	CCWWGG	1 cut(s)	901
Eco47I	GGWCC	1 cut(s)	80
Eco57I	CTGAAG	2 cut(s)	553, 697
EcoNI	CCTNNNNNAGG	2 cut(s)	344, 968
EcoO109I	RGGNCCY	3 cut(s)	284, 422, 518
EcoRII	CCWGG	1 cut(s)	339
EcoT14I	CCWWGG	1 cut(s)	901
EcoT22I	ATGCAT	2 cut(s)	235, 463
ErhI	CCWWGG	1 cut(s)	901
FaeI	CATG	6 cut(s)	53, 209, 223, 372, 465, 953
FatI	CATG	6 cut(s)	49, 205, 219, 368, 461, 949
FauNDI	CATATG	1 cut(s)	809
FblI	GTMKAC	1 cut(s)	779
Fnu4HI	GCNGC	2 cut(s)	180, 393
FokI	GGATG	3 cut(s)	446, 542, 575
Fsp4HI	GCNGC	2 cut(s)	180, 393
FspBI	CTAG	7 cut(s)	383, 426, 522, 539, 611, 848, 1105
GluI	GCNGC	2 cut(s)	180, 393
GsaI	CCCAGC	3 cut(s)	433, 529, 920
HaeIII	GGCC	4 cut(s)	44, 285, 424, 520
Hin1II	CATG	6 cut(s)	53, 209, 223, 372, 465, 953
HincII	GTYRAC	3 cut(s)	736, 892, 1099
HindII	GTYRAC	3 cut(s)	736, 892, 1099
HindIII	AAGCTT	2 cut(s)	565, 709
HinfI	GANTC	4 cut(s)	59, 401, 551, 795
HpaI	GTTAAC	1 cut(s)	736
HphI	GGTGA	1 cut(s)	1042
Hpy166II	GTNNAC	4 cut(s)	736, 780, 892, 1099
Hpy188I	TCNGA	3 cut(s)	327, 791, 925
Hpy8I	GTNNAC	4 cut(s)	736, 780, 892, 1099
HpyAV	CCTTC	4 cut(s)	4, 200, 796, 947
HpyCH4III	ACNGT	4 cut(s)	364, 750, 804, 931
HpyCH4V	TGCA	8 cut(s)	155, 199, 233, 410, 461, 488, 559, 1019
HpyF10VI	GCNNNNNNNGC	2 cut(s)	392, 1016
Hsp92II	CATG	6 cut(s)	53, 209, 223, 372, 465, 953
KspAI	GTTAAC	1 cut(s)	736
Kzo9I	GATC	5 cut(s)	166, 322, 327, 946, 960
LmnI	GCTCC	2 cut(s)	4, 601
Lsp1109I	GCAGC	2 cut(s)	166, 379
LweI	GCATC	4 cut(s)	220, 242, 419, 448
MaeI	CTAG	7 cut(s)	383, 426, 522, 539, 611, 848, 1105
MaeIII	GTNAC	2 cut(s)	464, 937
MalI	GATC	5 cut(s)	168, 324, 329, 948, 962
MboI	GATC	5 cut(s)	166, 322, 327, 946, 960
MboII	GAAGA	6 cut(s)	137, 356, 668, 804, 1045, 1093
MfeI	CAATTG	1 cut(s)	687
MflI	RGATCY	2 cut(s)	166, 960
MhlI	GDGCHC	1 cut(s)	116
MluCI	AATT	4 cut(s)	295, 483, 628, 687
MlyI	GAGTC	1 cut(s)	545
MmeI	TCCRAC	1 cut(s)	102
Mph1103I	ATGCAT	2 cut(s)	235, 463
MroXI	GAANNNNTTC	1 cut(s)	1001
MseI	TTAA	4 cut(s)	65, 162, 707, 735
MslI	CAYNNNNRTG	2 cut(s)	204, 885
MspR9I	CCNGG	1 cut(s)	341
MunI	CAATTG	1 cut(s)	687
MvaI	CCWGG	1 cut(s)	341
MwoI	GCNNNNNNNGC	2 cut(s)	392, 1016
NdeI	CATATG	1 cut(s)	809
NdeII	GATC	5 cut(s)	166, 322, 327, 946, 960
NlaIII	CATG	6 cut(s)	53, 209, 223, 372, 465, 953
NlaIV	GGNNCC	2 cut(s)	286, 577
NsiI	ATGCAT	2 cut(s)	235, 463
NspI	RCATGY	1 cut(s)	465
PagI	TCATGA	2 cut(s)	205, 949
PaqCI	CACCTGC	1 cut(s)	961
PcsI	WCGNNNNNNNCGW	1 cut(s)	759
PdmI	GAANNNNTTC	1 cut(s)	1001
PfeI	GAWTC	3 cut(s)	59, 401, 795
PflMI	CCANNNNNTGG	1 cut(s)	1058
PfoI	TCCNGGA	1 cut(s)	339
PkrI	GCNGC	2 cut(s)	181, 394
PleI	GAGTC	1 cut(s)	545
PpsI	GAGTC	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	339
PspFI	CCCAGC	3 cut(s)	429, 525, 916
PspGI	CCWGG	1 cut(s)	339
PspN4I	GGNNCC	2 cut(s)	286, 577
PspPI	GGNCC	4 cut(s)	80, 284, 422, 518
PsuI	RGATCY	2 cut(s)	166, 960
RsaI	GTAC	2 cut(s)	752, 770
RsaNI	GTAC	2 cut(s)	751, 769
RseI	CAYNNNNRTG	2 cut(s)	204, 885
SaqAI	TTAA	4 cut(s)	65, 162, 707, 735
SatI	GCNGC	2 cut(s)	180, 393
Sau3AI	GATC	5 cut(s)	166, 322, 327, 946, 960
Sau96I	GGNCC	4 cut(s)	80, 284, 422, 518
SchI	GAGTC	1 cut(s)	545
ScrFI	CCNGG	1 cut(s)	341
SduI	GDGCHC	1 cut(s)	116
SfaNI	GCATC	4 cut(s)	220, 242, 419, 448
SinI	GGWCC	1 cut(s)	80
SmiMI	CAYNNNNRTG	2 cut(s)	204, 885
Sse9I	AATT	4 cut(s)	295, 483, 628, 687
SspMI	CTAG	7 cut(s)	383, 426, 522, 539, 611, 848, 1105
StyD4I	CCNGG	1 cut(s)	339
StyI	CCWWGG	1 cut(s)	901
TaaI	ACNGT	4 cut(s)	364, 750, 804, 931
TaqI	TCGA	3 cut(s)	172, 321, 413
TasI	AATT	4 cut(s)	295, 483, 628, 687
TatI	WGTACW	1 cut(s)	768
TfiI	GAWTC	3 cut(s)	59, 401, 795
Tru1I	TTAA	4 cut(s)	65, 162, 707, 735
Tru9I	TTAA	4 cut(s)	65, 162, 707, 735
TscAI	CASTG	5 cut(s)	61, 274, 577, 994, 1063
TseI	GCWGC	2 cut(s)	179, 392
TspDTI	ATGAA	5 cut(s)	38, 194, 577, 966, 1002
TspRI	CASTG	5 cut(s)	61, 274, 577, 994, 1063
Van91I	CCANNNNNTGG	1 cut(s)	1058
VpaK11BI	GGWCC	1 cut(s)	80
XagI	CCTNNNNNAGG	2 cut(s)	344, 968
XapI	RAATTY	1 cut(s)	295
XbaI	TCTAGA	2 cut(s)	610, 847
XceI	RCATGY	1 cut(s)	465
XmiI	GTMKAC	1 cut(s)	779
XmnI	GAANNNNTTC	1 cut(s)	1001
XspI	CTAG	7 cut(s)	383, 426, 522, 539, 611, 848, 1105
Zsp2I	ATGCAT	2 cut(s)	235, 463

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.