Rroxscaffold_1G00005990

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0009391
Physical Location & Seq
Reverse (-)
8031794 .. 8033499
1706 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00005990.1

Sequence Viewer

Length: 1098 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTGGTAGCAATGGTCTTTCATGGCACTGAATCTTTAAGTGATGACGATGGACCTCTTGTTCTGGACTATTACAAAGAAAAGTGCCCTTTGTTGGAAGAGATTGTGAGGCAAAATGTTGAAGTTGCAGTTTTTAAAGATCCTCGAATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTTTTAGATAGTTTTGGAGGCATAACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTTATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCATTGGCTGCTCGTGATTCTAGAGGAGGGCCTAGCTGGGATGTGTGGCAAGATGATATGATAGATGCATGTAACATTACTATTTTACTAATTGCACTTCTTTTCTTTCTTGAAAAGAGAGGAGGGCCTAGTTGGGATGTGTGGCTAGGCAGGAGAGACTCCCTGCAAGCAAGCTTCAGTGGTGCCAACCAGTTCATCCCTGCTCCAAATAACTCTCTAGAAACTCTCATTTCCAATTTCAAACAACAAGGACTTGATATAGAAGACTTGGTTGCCTTGTCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAGCTTCAGGCAGAGGGTGTATGATGTGAACTTCAAAGGACAGTACGAAATATACGATAAGTACAGGAGGTACACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACACCAGCCAGATTTGACAATCATTATTATGTCAACCTTCTCCAAGGAAAAGGTTTGCTGGGTTCTGATACTGTATTGGTCACACAAGATCATGAAGGGAAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTTCATTTGCAAAATCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAAAGTTGTAGGTTTGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

365

Amino Acids

41.14

Weight (kDa)

6.11

Isoelectric Point (pI)

43.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 319 1.8e-74 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 952
Acc36I ACCTGC 1 cut(s) 952
AccB1I GGYRCC 1 cut(s) 566
AccB7I CCANNNNNTGG 1 cut(s) 1049
AclWI GGATC 2 cut(s) 161, 946
AcsI RAATTY 1 cut(s) 295
AcuI CTGAAG 2 cut(s) 544, 688
AfaI GTAC 3 cut(s) 743, 761, 770
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 812, 813, 961, 1049
AgsI TTSAA 4 cut(s) 149, 497, 625, 733
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 420, 558, 702
AluI AGCT 3 cut(s) 420, 558, 702
Alw26I GTCTC 1 cut(s) 534
AlwI GGATC 2 cut(s) 161, 946
AoxI GGCC 3 cut(s) 283, 413, 509
ApeKI GCWGC 2 cut(s) 179, 392
ApoI RAATTY 1 cut(s) 295
Asp700I GAANNNNTTC 1 cut(s) 992
AspS9I GGNCC 4 cut(s) 80, 284, 413, 509
AsuHPI GGTGA 1 cut(s) 1033
AvaII GGWCC 1 cut(s) 80
BaeGI GKGCMC 1 cut(s) 116
BanI GGYRCC 1 cut(s) 566
BarI GAAGNNNNNNTAC 2 cut(s) 761, 793
BauI CACGAG 1 cut(s) 396
BbsI GAAGAC 1 cut(s) 654
BbvI GCAGC 2 cut(s) 166, 379
BccI CCATC 2 cut(s) 71, 1021
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 1 cut(s) 534
BfaI CTAG 7 cut(s) 383, 405, 417, 513, 530, 602, 1096
BfuAI ACCTGC 1 cut(s) 952
BisI GCNGC 2 cut(s) 180, 393
BlsI GCNGC 2 cut(s) 181, 394
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 4 cut(s) 80, 284, 413, 509
BmiI GGNNCC 2 cut(s) 286, 568
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 3 cut(s) 220, 242, 439
BpiI GAAGAC 1 cut(s) 654
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 1 cut(s) 892
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 812, 813, 961, 1049
Bse1I ACTGG 3 cut(s) 267, 574, 1054
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 1 cut(s) 892
BseGI GGATG 3 cut(s) 430, 526, 579
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 812, 813, 961, 1049
BseMI GCAATG 1 cut(s) 45
BseNI ACTGG 3 cut(s) 267, 574, 1054
BseRI GAGGAG 2 cut(s) 423, 519
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 166, 379
BseYI CCCAGC 2 cut(s) 420, 907
BshFI GGCC 3 cut(s) 285, 415, 511
BshNI GGYRCC 1 cut(s) 566
BshVI ATCGAT 1 cut(s) 321
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 812, 813, 961, 1049
BsmAI GTCTC 1 cut(s) 534
BsnI GGCC 3 cut(s) 285, 415, 511
Bsp1286I GDGCHC 1 cut(s) 116
Bsp143I GATC 5 cut(s) 166, 322, 327, 937, 951
BspANI GGCC 3 cut(s) 285, 415, 511
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 2 cut(s) 205, 940
BspLI GGNNCC 2 cut(s) 286, 568
BspMI ACCTGC 1 cut(s) 952
BspPI GGATC 2 cut(s) 161, 946
BspT107I GGYRCC 1 cut(s) 566
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 3 cut(s) 267, 574, 1054
BssECI CCNNGG 1 cut(s) 892
BssMI GATC 5 cut(s) 166, 322, 327, 937, 951
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 892
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 4 cut(s) 364, 741, 795, 922
Bst6I CTCTTC 2 cut(s) 120, 339
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 552, 556
BstENI CCTNNNNNAGG 2 cut(s) 344, 959
BstF5I GGATG 3 cut(s) 430, 526, 579
BstKTI GATC 5 cut(s) 169, 325, 330, 940, 954
BstMAI GTCTC 1 cut(s) 534
BstMBI GATC 5 cut(s) 166, 322, 327, 937, 951
BstMWI GCNNNNNNNGC 2 cut(s) 392, 1007
BstNI CCWGG 1 cut(s) 341
BstNSI RCATGY 1 cut(s) 456
BstSCI CCNGG 1 cut(s) 339
BstSLI GKGCMC 1 cut(s) 116
BstV1I GCAGC 2 cut(s) 166, 379
BstV2I GAAGAC 1 cut(s) 654
BstX2I RGATCY 2 cut(s) 166, 951
BstXI CCANNNNNNTGG 1 cut(s) 680
BstYI RGATCY 2 cut(s) 166, 951
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 3 cut(s) 285, 415, 511
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 430, 526, 579
BtsIMutI CAGTG 5 cut(s) 54, 274, 568, 978, 1047
BveI ACCTGC 1 cut(s) 952
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 552, 556
CciI TCATGA 2 cut(s) 205, 940
Cfr13I GGNCC 4 cut(s) 80, 284, 413, 509
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 3 cut(s) 742, 760, 769
CviAII CATG 6 cut(s) 50, 206, 220, 369, 453, 941
CviQI GTAC 3 cut(s) 742, 760, 769
DpnI GATC 5 cut(s) 168, 324, 329, 939, 953
DpnII GATC 5 cut(s) 166, 322, 327, 937, 951
DraI TTTAAA 1 cut(s) 163
Eam1104I CTCTTC 2 cut(s) 120, 339
EarI CTCTTC 2 cut(s) 120, 339
Eco130I CCWWGG 1 cut(s) 892
Eco47I GGWCC 1 cut(s) 80
Eco57I CTGAAG 2 cut(s) 544, 688
EcoNI CCTNNNNNAGG 2 cut(s) 344, 959
EcoO109I RGGNCCY 3 cut(s) 284, 413, 509
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 892
EcoT22I ATGCAT 2 cut(s) 235, 454
ErhI CCWWGG 1 cut(s) 892
FaeI CATG 6 cut(s) 53, 209, 223, 372, 456, 944
FatI CATG 6 cut(s) 49, 205, 219, 368, 452, 940
FauNDI CATATG 1 cut(s) 800
Fnu4HI GCNGC 2 cut(s) 180, 393
FokI GGATG 3 cut(s) 437, 533, 566
Fsp4HI GCNGC 2 cut(s) 180, 393
FspBI CTAG 7 cut(s) 383, 405, 417, 513, 530, 602, 1096
GluI GCNGC 2 cut(s) 180, 393
GsaI CCCAGC 2 cut(s) 424, 911
HaeIII GGCC 3 cut(s) 285, 415, 511
Hin1II CATG 6 cut(s) 53, 209, 223, 372, 456, 944
HincII GTYRAC 2 cut(s) 883, 1090
HindII GTYRAC 2 cut(s) 883, 1090
HindIII AAGCTT 2 cut(s) 556, 700
HinfI GANTC 4 cut(s) 59, 401, 542, 786
HphI GGTGA 1 cut(s) 1033
Hpy166II GTNNAC 4 cut(s) 727, 771, 883, 1090
Hpy188I TCNGA 3 cut(s) 327, 782, 916
Hpy8I GTNNAC 4 cut(s) 727, 771, 883, 1090
HpyAV CCTTC 5 cut(s) 4, 200, 787, 896, 938
HpyCH4III ACNGT 4 cut(s) 364, 741, 795, 922
HpyCH4V TGCA 7 cut(s) 155, 199, 233, 452, 479, 550, 1010
HpyF10VI GCNNNNNNNGC 2 cut(s) 392, 1007
Hsp92II CATG 6 cut(s) 53, 209, 223, 372, 456, 944
Kzo9I GATC 5 cut(s) 166, 322, 327, 937, 951
LmnI GCTCC 2 cut(s) 4, 592
Lsp1109I GCAGC 2 cut(s) 166, 379
LweI GCATC 3 cut(s) 220, 242, 439
MaeI CTAG 7 cut(s) 383, 405, 417, 513, 530, 602, 1096
MaeIII GTNAC 2 cut(s) 455, 928
MalI GATC 5 cut(s) 168, 324, 329, 939, 953
MboI GATC 5 cut(s) 166, 322, 327, 937, 951
MboII GAAGA 6 cut(s) 137, 356, 659, 795, 961, 1036
MfeI CAATTG 1 cut(s) 678
MflI RGATCY 2 cut(s) 166, 951
MhlI GDGCHC 1 cut(s) 116
MluCI AATT 4 cut(s) 295, 474, 619, 678
MlyI GAGTC 1 cut(s) 536
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 2 cut(s) 235, 454
MroXI GAANNNNTTC 1 cut(s) 992
MseI TTAA 3 cut(s) 65, 162, 698
MslI CAYNNNNRTG 2 cut(s) 204, 876
MspR9I CCNGG 1 cut(s) 341
MunI CAATTG 1 cut(s) 678
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 2 cut(s) 392, 1007
NdeI CATATG 1 cut(s) 800
NdeII GATC 5 cut(s) 166, 322, 327, 937, 951
NlaIII CATG 6 cut(s) 53, 209, 223, 372, 456, 944
NlaIV GGNNCC 2 cut(s) 286, 568
NmuCI GTSAC 1 cut(s) 928
NsiI ATGCAT 2 cut(s) 235, 454
NspI RCATGY 1 cut(s) 456
PagI TCATGA 2 cut(s) 205, 940
PaqCI CACCTGC 1 cut(s) 952
PcsI WCGNNNNNNNCGW 1 cut(s) 750
PdmI GAANNNNTTC 1 cut(s) 992
PfeI GAWTC 3 cut(s) 59, 401, 786
PflMI CCANNNNNTGG 1 cut(s) 1049
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 2 cut(s) 181, 394
PleI GAGTC 1 cut(s) 536
PpsI GAGTC 1 cut(s) 536
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 2 cut(s) 420, 907
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 2 cut(s) 286, 568
PspPI GGNCC 4 cut(s) 80, 284, 413, 509
PsuI RGATCY 2 cut(s) 166, 951
RsaI GTAC 3 cut(s) 743, 761, 770
RsaNI GTAC 3 cut(s) 742, 760, 769
RseI CAYNNNNRTG 2 cut(s) 204, 876
SaqAI TTAA 3 cut(s) 65, 162, 698
SatI GCNGC 2 cut(s) 180, 393
Sau3AI GATC 5 cut(s) 166, 322, 327, 937, 951
Sau96I GGNCC 4 cut(s) 80, 284, 413, 509
SchI GAGTC 1 cut(s) 536
ScrFI CCNGG 1 cut(s) 341
SduI GDGCHC 1 cut(s) 116
SfaNI GCATC 3 cut(s) 220, 242, 439
SinI GGWCC 1 cut(s) 80
SmiMI CAYNNNNRTG 2 cut(s) 204, 876
Sse9I AATT 4 cut(s) 295, 474, 619, 678
SspMI CTAG 7 cut(s) 383, 405, 417, 513, 530, 602, 1096
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 892
TaaI ACNGT 4 cut(s) 364, 741, 795, 922
TaqI TCGA 2 cut(s) 172, 321
TasI AATT 4 cut(s) 295, 474, 619, 678
TatI WGTACW 1 cut(s) 759
TfiI GAWTC 3 cut(s) 59, 401, 786
Tru1I TTAA 3 cut(s) 65, 162, 698
Tru9I TTAA 3 cut(s) 65, 162, 698
TscAI CASTG 5 cut(s) 61, 274, 568, 985, 1054
TseFI GTSAC 1 cut(s) 928
TseI GCWGC 2 cut(s) 179, 392
Tsp45I GTSAC 1 cut(s) 928
TspDTI ATGAA 5 cut(s) 38, 194, 568, 957, 993
TspRI CASTG 5 cut(s) 61, 274, 568, 985, 1054
Van91I CCANNNNNTGG 1 cut(s) 1049
VpaK11BI GGWCC 1 cut(s) 80
XagI CCTNNNNNAGG 2 cut(s) 344, 959
XapI RAATTY 1 cut(s) 295
XbaI TCTAGA 2 cut(s) 404, 601
XceI RCATGY 1 cut(s) 456
XmnI GAANNNNTTC 1 cut(s) 992
XspI CTAG 7 cut(s) 383, 405, 417, 513, 530, 602, 1096
Zsp2I ATGCAT 2 cut(s) 235, 454
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.