RLG00000003203

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0009391
Physical Location & Seq
Reverse (-)
45555866 .. 45557410
1545 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000003203

Sequence Viewer

Length: 1011 bp
ATGGAGCAGAAGGGGAGGATATTCTTGATTTTATTAGCAATGGTTTTTCATGGCACTGAGACTTTCAGTGATGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAGGATCCTCGGATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGGTTGCGATGCATCTGTTCTCTTAGATAGCTTTGGAGGCATCACCAGTGAAAAGCAAGCAGGCCCCAACCTAAATTCTTTACGAGGATTTGAGGTCATCGATCAGATCAAATACCTCCTGGAAGAGGCTTGTCCAAGAACAGTATCATGTGCTGATATTCTAGCAGTGGCTGCTCGTGATTCTGTTGCATCGAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCCGCTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATAGGAGACTTGGTTGCCTTGTCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGGTCTATGATGTGAACTTCAGAGGACAGTATGAAATATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCACTATTACGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATAATGAAGGGGGGGTCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCAATCACTGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

337

Amino Acids

37.68

Weight (kDa)

6.99

Isoelectric Point (pI)

40.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 45 - 285 7.1e-79 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 865
Acc36I ACCTGC 1 cut(s) 865
AccB1I GGYRCC 1 cut(s) 479
AccB7I CCANNNNNTGG 1 cut(s) 962
AccBSI CCGCTC 1 cut(s) 500
AciI CCGC 1 cut(s) 498
AclWI GGATC 2 cut(s) 161, 174
AcsI RAATTY 2 cut(s) 295, 505
AcuI CTGAAG 3 cut(s) 457, 601, 628
AfaI GTAC 1 cut(s) 674
AfiI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
AgsI TTSAA 2 cut(s) 149, 538
AjnI CCWGG 1 cut(s) 339
AloI GAACNNNNNNTCC 2 cut(s) 72, 104
AluBI AGCT 3 cut(s) 252, 429, 471
AluI AGCT 3 cut(s) 252, 429, 471
Alw26I GTCTC 3 cut(s) 53, 447, 555
AlwI GGATC 2 cut(s) 161, 174
AlwNI CAGNNNCTG 1 cut(s) 392
AoxI GGCC 2 cut(s) 283, 422
ApeKI GCWGC 3 cut(s) 179, 392, 914
ApoI RAATTY 2 cut(s) 295, 505
Asp700I GAANNNNTTC 1 cut(s) 905
AspS9I GGNCC 4 cut(s) 80, 284, 422, 865
AsuHPI GGTGA 2 cut(s) 256, 946
AvaII GGWCC 2 cut(s) 80, 865
BamHI GGATCC 1 cut(s) 166
BanI GGYRCC 1 cut(s) 479
BauI CACGAG 1 cut(s) 396
BbvI GCAGC 3 cut(s) 166, 379, 901
BccI CCATC 3 cut(s) 71, 169, 934
BciT130I CCWGG 1 cut(s) 341
BcoDI GTCTC 3 cut(s) 53, 447, 555
BfaI CTAG 5 cut(s) 383, 426, 443, 821, 1009
BfuAI ACCTGC 1 cut(s) 865
BisI GCNGC 3 cut(s) 180, 393, 915
BlsI GCNGC 3 cut(s) 181, 394, 916
Bme1390I CCNGG 1 cut(s) 341
Bme18I GGWCC 2 cut(s) 80, 865
BmgT120I GGNCC 4 cut(s) 80, 284, 422, 865
BmiI GGNNCC 4 cut(s) 168, 286, 481, 866
BmrFI CCNGG 1 cut(s) 341
BmsI GCATC 4 cut(s) 220, 242, 270, 419
BplI GAGNNNNNCTC 2 cut(s) 442, 474
Bsa29I ATCGAT 1 cut(s) 321
BsaJI CCNNGG 2 cut(s) 170, 805
BsaXI ACNNNNNCTCC 2 cut(s) 552, 582
Bsc4I CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
Bse1I ACTGG 2 cut(s) 267, 967
Bse3DI GCAATG 1 cut(s) 45
BseBI CCWGG 1 cut(s) 341
BseCI ATCGAT 1 cut(s) 321
BseDI CCNNGG 2 cut(s) 170, 805
BseGI GGATG 3 cut(s) 180, 439, 492
BseLI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BseMI GCAATG 1 cut(s) 45
BseMII CTCAG 1 cut(s) 48
BseNI ACTGG 2 cut(s) 267, 967
BseRI GAGGAG 1 cut(s) 432
BseXI GCAGC 3 cut(s) 166, 379, 901
BseYI CCCAGC 1 cut(s) 429
BshFI GGCC 2 cut(s) 285, 424
BshNI GGYRCC 1 cut(s) 479
BshVI ATCGAT 1 cut(s) 321
BslFI GGGAC 1 cut(s) 561
BslI CCNNNNNNNGG 6 cut(s) 121, 346, 725, 726, 874, 962
BsmAI GTCTC 3 cut(s) 53, 447, 555
BsmFI GGGAC 1 cut(s) 561
BsnI GGCC 2 cut(s) 285, 424
Bsp143I GATC 3 cut(s) 166, 322, 327
BspACI CCGC 1 cut(s) 498
BspANI GGCC 2 cut(s) 285, 424
BspCNI CTCAG 1 cut(s) 49
BspDI ATCGAT 1 cut(s) 321
BspHI TCATGA 1 cut(s) 205
BspLI GGNNCC 4 cut(s) 168, 286, 481, 866
BspMI ACCTGC 1 cut(s) 865
BspPI GGATC 2 cut(s) 161, 174
BspT107I GGYRCC 1 cut(s) 479
BsrBI CCGCTC 1 cut(s) 500
BsrDI GCAATG 1 cut(s) 45
BsrI ACTGG 2 cut(s) 267, 967
BssECI CCNNGG 2 cut(s) 170, 805
BssMI GATC 3 cut(s) 166, 322, 327
BssSI CACGAG 1 cut(s) 396
BssT1I CCWWGG 1 cut(s) 805
Bst2BI CACGAG 1 cut(s) 396
Bst2UI CCWGG 1 cut(s) 341
Bst4CI ACNGT 3 cut(s) 364, 654, 708
Bst6I CTCTTC 2 cut(s) 120, 339
BstAPI GCANNNNNTGC 1 cut(s) 392
BstC8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
BstDEI CTNAG 2 cut(s) 57, 244
BstENI CCTNNNNNAGG 2 cut(s) 344, 872
BstF5I GGATG 3 cut(s) 180, 439, 492
BstKTI GATC 3 cut(s) 169, 325, 330
BstMAI GTCTC 3 cut(s) 53, 447, 555
BstMBI GATC 3 cut(s) 166, 322, 327
BstMWI GCNNNNNNNGC 3 cut(s) 258, 392, 920
BstNI CCWGG 1 cut(s) 341
BstSCI CCNGG 1 cut(s) 339
BstV1I GCAGC 3 cut(s) 166, 379, 901
BstX2I RGATCY 1 cut(s) 166
BstXI CCANNNNNNTGG 1 cut(s) 593
BstYI RGATCY 1 cut(s) 166
Bsu15I ATCGAT 1 cut(s) 321
BsuRI GGCC 2 cut(s) 285, 424
BsuTUI ATCGAT 1 cut(s) 321
BtgZI GCGATG 1 cut(s) 243
BtsCI GGATG 3 cut(s) 180, 439, 492
BtsI GCAGTG 1 cut(s) 393
BtsIMutI CAGTG 7 cut(s) 54, 73, 274, 393, 481, 891, 960
BveI ACCTGC 1 cut(s) 865
Cac8I GCNNGC 5 cut(s) 197, 279, 283, 465, 469
CaiI CAGNNNCTG 1 cut(s) 392
CciI TCATGA 1 cut(s) 205
Cfr13I GGNCC 4 cut(s) 80, 284, 422, 865
ClaI ATCGAT 1 cut(s) 321
Csp6I GTAC 1 cut(s) 673
CviAII CATG 4 cut(s) 50, 206, 220, 369
CviQI GTAC 1 cut(s) 673
DdeI CTNAG 2 cut(s) 57, 244
DpnI GATC 3 cut(s) 168, 324, 329
DpnII GATC 3 cut(s) 166, 322, 327
DraI TTTAAA 1 cut(s) 612
Eam1104I CTCTTC 2 cut(s) 120, 339
EarI CTCTTC 2 cut(s) 120, 339
Eco130I CCWWGG 1 cut(s) 805
Eco47I GGWCC 2 cut(s) 80, 865
Eco57I CTGAAG 3 cut(s) 457, 601, 628
EcoNI CCTNNNNNAGG 2 cut(s) 344, 872
EcoO109I RGGNCCY 3 cut(s) 284, 422, 865
EcoRII CCWGG 1 cut(s) 339
EcoT14I CCWWGG 1 cut(s) 805
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 805
FaeI CATG 4 cut(s) 53, 209, 223, 372
FaqI GGGAC 1 cut(s) 561
FatI CATG 4 cut(s) 49, 205, 219, 368
FauI CCCGC 1 cut(s) 505
FauNDI CATATG 1 cut(s) 713
Fnu4HI GCNGC 3 cut(s) 180, 393, 915
FokI GGATG 3 cut(s) 187, 446, 479
Fsp4HI GCNGC 3 cut(s) 180, 393, 915
FspBI CTAG 5 cut(s) 383, 426, 443, 821, 1009
GluI GCNGC 3 cut(s) 180, 393, 915
GsaI CCCAGC 1 cut(s) 433
HaeIII GGCC 2 cut(s) 285, 424
Hin1II CATG 4 cut(s) 53, 209, 223, 372
HincII GTYRAC 2 cut(s) 796, 1003
HindII GTYRAC 2 cut(s) 796, 1003
HindIII AAGCTT 1 cut(s) 469
HinfI GANTC 3 cut(s) 401, 455, 699
HphI GGTGA 2 cut(s) 256, 946
Hpy166II GTNNAC 3 cut(s) 640, 796, 1003
Hpy188I TCNGA 5 cut(s) 174, 327, 647, 695, 829
Hpy188III TCNNGA 7 cut(s) 25, 92, 206, 398, 414, 752, 982
Hpy8I GTNNAC 3 cut(s) 640, 796, 1003
HpyAV CCTTC 4 cut(s) 4, 200, 700, 851
HpyCH4III ACNGT 3 cut(s) 364, 654, 708
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 7 cut(s) 155, 199, 233, 410, 463, 917, 923
HpyF10VI GCNNNNNNNGC 3 cut(s) 258, 392, 920
HpyF3I CTNAG 2 cut(s) 57, 244
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 4 cut(s) 53, 209, 223, 372
Kzo9I GATC 3 cut(s) 166, 322, 327
LmnI GCTCC 2 cut(s) 4, 505
Lsp1109I GCAGC 3 cut(s) 166, 379, 901
LweI GCATC 4 cut(s) 220, 242, 270, 419
MaeI CTAG 5 cut(s) 383, 426, 443, 821, 1009
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 1 cut(s) 841
MalI GATC 3 cut(s) 168, 324, 329
MbiI CCGCTC 1 cut(s) 500
MboI GATC 3 cut(s) 166, 322, 327
MboII GAAGA 5 cut(s) 137, 356, 708, 949, 997
MfeI CAATTG 1 cut(s) 591
MflI RGATCY 1 cut(s) 166
MluCI AATT 5 cut(s) 295, 505, 532, 591, 988
MlyI GAGTC 1 cut(s) 449
MmeI TCCRAC 1 cut(s) 102
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 1 cut(s) 905
MseI TTAA 2 cut(s) 162, 611
MslI CAYNNNNRTG 1 cut(s) 204
MspR9I CCNGG 1 cut(s) 341
MssI GTTTAAAC 1 cut(s) 612
MunI CAATTG 1 cut(s) 591
MvaI CCWGG 1 cut(s) 341
MwoI GCNNNNNNNGC 3 cut(s) 258, 392, 920
NdeI CATATG 1 cut(s) 713
NdeII GATC 3 cut(s) 166, 322, 327
NlaIII CATG 4 cut(s) 53, 209, 223, 372
NlaIV GGNNCC 4 cut(s) 168, 286, 481, 866
NmuCI GTSAC 1 cut(s) 841
NsiI ATGCAT 1 cut(s) 235
PagI TCATGA 1 cut(s) 205
PaqCI CACCTGC 1 cut(s) 865
PdmI GAANNNNTTC 1 cut(s) 905
PfeI GAWTC 2 cut(s) 401, 699
PflMI CCANNNNNTGG 1 cut(s) 962
PfoI TCCNGGA 1 cut(s) 339
PkrI GCNGC 3 cut(s) 181, 394, 916
PleI GAGTC 1 cut(s) 449
PmeI GTTTAAAC 1 cut(s) 612
PpsI GAGTC 1 cut(s) 449
PpuMI RGGWCCY 1 cut(s) 865
Psp5II RGGWCCY 1 cut(s) 865
Psp6I CCWGG 1 cut(s) 339
PspFI CCCAGC 1 cut(s) 429
PspGI CCWGG 1 cut(s) 339
PspN4I GGNNCC 4 cut(s) 168, 286, 481, 866
PspPI GGNCC 4 cut(s) 80, 284, 422, 865
PspPPI RGGWCCY 1 cut(s) 865
PstNI CAGNNNCTG 1 cut(s) 392
PsuI RGATCY 1 cut(s) 166
RsaI GTAC 1 cut(s) 674
RsaNI GTAC 1 cut(s) 673
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 162, 611
SatI GCNGC 3 cut(s) 180, 393, 915
Sau3AI GATC 3 cut(s) 166, 322, 327
Sau96I GGNCC 4 cut(s) 80, 284, 422, 865
SchI GAGTC 1 cut(s) 449
ScrFI CCNGG 1 cut(s) 341
SfaNI GCATC 4 cut(s) 220, 242, 270, 419
SinI GGWCC 2 cut(s) 80, 865
SmiMI CAYNNNNRTG 1 cut(s) 204
Sse9I AATT 5 cut(s) 295, 505, 532, 591, 988
SsiI CCGC 1 cut(s) 498
SspMI CTAG 5 cut(s) 383, 426, 443, 821, 1009
StyD4I CCNGG 1 cut(s) 339
StyI CCWWGG 1 cut(s) 805
TaaI ACNGT 3 cut(s) 364, 654, 708
TaiI ACGT 1 cut(s) 795
TaqI TCGA 2 cut(s) 321, 413
TasI AATT 5 cut(s) 295, 505, 532, 591, 988
TatI WGTACW 1 cut(s) 672
TfiI GAWTC 2 cut(s) 401, 699
Tru1I TTAA 2 cut(s) 162, 611
Tru9I TTAA 2 cut(s) 162, 611
TscAI CASTG 7 cut(s) 61, 73, 274, 393, 481, 898, 967
TseFI GTSAC 1 cut(s) 841
TseI GCWGC 3 cut(s) 179, 392, 914
Tsp45I GTSAC 1 cut(s) 841
TspDTI ATGAA 5 cut(s) 38, 194, 481, 672, 870
TspRI CASTG 7 cut(s) 61, 73, 274, 393, 481, 898, 967
Van91I CCANNNNNTGG 1 cut(s) 962
VpaK11BI GGWCC 2 cut(s) 80, 865
XagI CCTNNNNNAGG 2 cut(s) 344, 872
XapI RAATTY 2 cut(s) 295, 505
XmnI GAANNNNTTC 1 cut(s) 905
XspI CTAG 5 cut(s) 383, 426, 443, 821, 1009
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.