Rw7G020390

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0009391
Physical Location & Seq
Forward (+)
23134536 .. 23135976
1441 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G020390.1

Sequence Viewer

Length: 891 bp
ATGATGGAGCAGAAGGGGGGGATATTCTTGATTTTAGTAGCAATGGTTTTTCATGGCACTGAATCTTTCAGTGGTGATGATGGACCTCTTGTTCTTGACTATTACAAAGAAAAATGCCCTTTGTTGGAAGAGATTGTGAGGCACAATGTTGAAGTTGCAGTTTTTAAGGATCCTCGGATGGCTGCTTCTCTCCTTCGCTTGCATTTTCATGATTGTTTTGTCATGGTACTCTCTCTCTCTCTCTCTCTCTCACACACACACACACACACACACAAAATCTTTCAAGAAGAAATAAGAGGAGGGCCTAGCTGGGATGTGTGGCTAGGCAGGAGAGACTCTCTGCAAGCAAGCTTCAGTGGTGCCAATCAGTTCATCCCCGCTCCAAATTCCTCTCTACAAACTCTCATTTCCAATTTCAAACAACAGGGACTTGATATCGGAGACTTGGTTGCCTTATCAGGTAGCCACACAATTGGAAAGGCAAGATGTTTAAACTTCAGGCAGAGGGTCTATGATGTGAACTTCAGAGGACAGTATGAAATATACGATAAGTACAGGAGATATACTTCCTTCCGAAGAATCTTACAGTCCATATGCCCCAAATCAGGGAGGAACAATGATTTAGCACCTCTTGATTTTATGACACCAGCCCGATTTGACAATCATTATTATGTCAACCTACTCCAAGGAAAAGGTTTGCTAGTTTCTGATAATGTATTGGTCACGCAAGATCATGAAGGGGAGATCCTAAAGCAGGTGTGGGCTTATGCCACTGATGAGAAACTTTTCTTTGCTGCATTTGCAAACTCTATGGTGAAGATGGGAAACATCAATCCGATCACCGGAAATCAAGGAGAAATCAGGAAGAATTGTAGGTTCGTCAACACCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

296

Amino Acids

33.7

Weight (kDa)

8.23

Isoelectric Point (pI)

39.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 99 - 254 1.8e-37 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 745
Acc36I ACCTGC 1 cut(s) 745
AccB1I GGYRCC 1 cut(s) 359
AccBSI CCGCTC 1 cut(s) 380
AciI CCGC 1 cut(s) 378
AclWI GGATC 3 cut(s) 164, 177, 739
AcsI RAATTY 1 cut(s) 385
AcuI CTGAAG 3 cut(s) 337, 481, 508
AfaI GTAC 2 cut(s) 228, 554
AfiI CCNNNNNNNGG 5 cut(s) 124, 605, 606, 754, 842
AgsI TTSAA 3 cut(s) 152, 284, 418
AloI GAACNNNNNNTCC 2 cut(s) 75, 107
AluBI AGCT 2 cut(s) 309, 351
AluI AGCT 2 cut(s) 309, 351
Alw26I GTCTC 2 cut(s) 327, 435
AlwI GGATC 3 cut(s) 164, 177, 739
AoxI GGCC 1 cut(s) 302
ApeKI GCWGC 2 cut(s) 182, 794
ApoI RAATTY 1 cut(s) 385
Asp700I GAANNNNTTC 1 cut(s) 785
AspS9I GGNCC 2 cut(s) 83, 302
AsuHPI GGTGA 3 cut(s) 86, 826, 832
AvaII GGWCC 1 cut(s) 83
BamHI GGATCC 1 cut(s) 169
BanI GGYRCC 1 cut(s) 359
BbvI GCAGC 2 cut(s) 169, 781
BccI CCATC 3 cut(s) 74, 172, 814
BcoDI GTCTC 2 cut(s) 327, 435
BfaI CTAG 4 cut(s) 306, 323, 701, 889
BfuAI ACCTGC 1 cut(s) 745
BisI GCNGC 2 cut(s) 183, 795
BlsI GCNGC 2 cut(s) 184, 796
Bme18I GGWCC 1 cut(s) 83
BmgT120I GGNCC 2 cut(s) 83, 302
BmiI GGNNCC 2 cut(s) 171, 361
BplI GAGNNNNNCTC 2 cut(s) 322, 354
BsaJI CCNNGG 2 cut(s) 173, 685
BsaWI WCCGGW 1 cut(s) 842
BsaXI ACNNNNNCTCC 2 cut(s) 432, 462
Bsc4I CCNNNNNNNGG 5 cut(s) 124, 605, 606, 754, 842
Bse3DI GCAATG 1 cut(s) 48
BseDI CCNNGG 2 cut(s) 173, 685
BseGI GGATG 3 cut(s) 183, 319, 372
BseLI CCNNNNNNNGG 5 cut(s) 124, 605, 606, 754, 842
BseMI GCAATG 1 cut(s) 48
BseRI GAGGAG 1 cut(s) 312
BseXI GCAGC 2 cut(s) 169, 781
BseYI CCCAGC 1 cut(s) 309
BshFI GGCC 1 cut(s) 304
BshNI GGYRCC 1 cut(s) 359
BsiSI CCGG 1 cut(s) 843
BslFI GGGAC 1 cut(s) 441
BslI CCNNNNNNNGG 5 cut(s) 124, 605, 606, 754, 842
BsmAI GTCTC 2 cut(s) 327, 435
BsmFI GGGAC 1 cut(s) 441
BsnI GGCC 1 cut(s) 304
Bsp143I GATC 4 cut(s) 169, 730, 744, 837
BspACI CCGC 1 cut(s) 378
BspANI GGCC 1 cut(s) 304
BspHI TCATGA 2 cut(s) 208, 733
BspLI GGNNCC 2 cut(s) 171, 361
BspMI ACCTGC 1 cut(s) 745
BspPI GGATC 3 cut(s) 164, 177, 739
BspT107I GGYRCC 1 cut(s) 359
BsrBI CCGCTC 1 cut(s) 380
BsrDI GCAATG 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 173, 685
BssMI GATC 4 cut(s) 169, 730, 744, 837
BssT1I CCWWGG 1 cut(s) 685
Bst4CI ACNGT 2 cut(s) 534, 588
Bst6I CTCTTC 1 cut(s) 123
BstC8I GCNNGC 3 cut(s) 200, 345, 349
BstENI CCTNNNNNAGG 1 cut(s) 752
BstF5I GGATG 3 cut(s) 183, 319, 372
BstKTI GATC 4 cut(s) 172, 733, 747, 840
BstMAI GTCTC 2 cut(s) 327, 435
BstMBI GATC 4 cut(s) 169, 730, 744, 837
BstMWI GCNNNNNNNGC 1 cut(s) 800
BstV1I GCAGC 2 cut(s) 169, 781
BstX2I RGATCY 2 cut(s) 169, 744
BstXI CCANNNNNNTGG 1 cut(s) 473
BstYI RGATCY 2 cut(s) 169, 744
BsuRI GGCC 1 cut(s) 304
BtsCI GGATG 3 cut(s) 183, 319, 372
BtsIMutI CAGTG 4 cut(s) 57, 76, 361, 771
BveI ACCTGC 1 cut(s) 745
Cac8I GCNNGC 3 cut(s) 200, 345, 349
CciI TCATGA 2 cut(s) 208, 733
Cfr13I GGNCC 2 cut(s) 83, 302
Csp6I GTAC 2 cut(s) 227, 553
CviAII CATG 4 cut(s) 53, 209, 223, 734
CviJI RGCY 8 cut(s) 182, 304, 309, 322, 351, 465, 650, 764
CviKI_1 RGCY 8 cut(s) 182, 304, 309, 322, 351, 465, 650, 764
CviQI GTAC 2 cut(s) 227, 553
DpnI GATC 4 cut(s) 171, 732, 746, 839
DpnII GATC 4 cut(s) 169, 730, 744, 837
DraI TTTAAA 1 cut(s) 492
Eam1104I CTCTTC 1 cut(s) 123
EarI CTCTTC 1 cut(s) 123
Eco130I CCWWGG 1 cut(s) 685
Eco32I GATATC 1 cut(s) 436
Eco47I GGWCC 1 cut(s) 83
Eco57I CTGAAG 3 cut(s) 337, 481, 508
EcoNI CCTNNNNNAGG 1 cut(s) 752
EcoO109I RGGNCCY 1 cut(s) 302
EcoRV GATATC 1 cut(s) 436
EcoT14I CCWWGG 1 cut(s) 685
ErhI CCWWGG 1 cut(s) 685
FaeI CATG 4 cut(s) 56, 212, 226, 737
FaqI GGGAC 1 cut(s) 441
FatI CATG 4 cut(s) 52, 208, 222, 733
FauI CCCGC 1 cut(s) 385
FauNDI CATATG 1 cut(s) 593
Fnu4HI GCNGC 2 cut(s) 183, 795
FokI GGATG 3 cut(s) 190, 326, 359
Fsp4HI GCNGC 2 cut(s) 183, 795
FspBI CTAG 4 cut(s) 306, 323, 701, 889
GluI GCNGC 2 cut(s) 183, 795
GsaI CCCAGC 1 cut(s) 313
HaeIII GGCC 1 cut(s) 304
HapII CCGG 1 cut(s) 843
Hin1II CATG 4 cut(s) 56, 212, 226, 737
HincII GTYRAC 2 cut(s) 676, 883
HindII GTYRAC 2 cut(s) 676, 883
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 3 cut(s) 62, 335, 579
HpaII CCGG 1 cut(s) 843
HphI GGTGA 3 cut(s) 86, 826, 832
Hpy166II GTNNAC 3 cut(s) 520, 676, 883
Hpy188I TCNGA 6 cut(s) 177, 440, 527, 575, 709, 837
Hpy188III TCNNGA 7 cut(s) 28, 95, 209, 284, 632, 734, 862
Hpy8I GTNNAC 3 cut(s) 520, 676, 883
HpyAV CCTTC 4 cut(s) 7, 203, 580, 731
HpyCH4III ACNGT 2 cut(s) 534, 588
HpyCH4V TGCA 5 cut(s) 158, 202, 343, 797, 803
HpyF10VI GCNNNNNNNGC 1 cut(s) 800
Hsp92II CATG 4 cut(s) 56, 212, 226, 737
Kzo9I GATC 4 cut(s) 169, 730, 744, 837
LmnI GCTCC 2 cut(s) 7, 385
Lsp1109I GCAGC 2 cut(s) 169, 781
MaeI CTAG 4 cut(s) 306, 323, 701, 889
MaeIII GTNAC 1 cut(s) 721
MalI GATC 4 cut(s) 171, 732, 746, 839
MbiI CCGCTC 1 cut(s) 380
MboI GATC 4 cut(s) 169, 730, 744, 837
MboII GAAGA 5 cut(s) 140, 299, 588, 829, 877
MfeI CAATTG 1 cut(s) 471
MflI RGATCY 2 cut(s) 169, 744
MluCI AATT 4 cut(s) 385, 412, 471, 868
MlyI GAGTC 1 cut(s) 329
MmeI TCCRAC 1 cut(s) 105
MroXI GAANNNNTTC 1 cut(s) 785
MseI TTAA 2 cut(s) 165, 491
MslI CAYNNNNRTG 2 cut(s) 207, 669
MspI CCGG 1 cut(s) 843
MssI GTTTAAAC 1 cut(s) 492
MunI CAATTG 1 cut(s) 471
MwoI GCNNNNNNNGC 1 cut(s) 800
NdeI CATATG 1 cut(s) 593
NdeII GATC 4 cut(s) 169, 730, 744, 837
NlaIII CATG 4 cut(s) 56, 212, 226, 737
NlaIV GGNNCC 2 cut(s) 171, 361
NmuCI GTSAC 1 cut(s) 721
PagI TCATGA 2 cut(s) 208, 733
PaqCI CACCTGC 1 cut(s) 745
PdmI GAANNNNTTC 1 cut(s) 785
PfeI GAWTC 2 cut(s) 62, 579
PkrI GCNGC 2 cut(s) 184, 796
PleI GAGTC 1 cut(s) 329
PmeI GTTTAAAC 1 cut(s) 492
PpsI GAGTC 1 cut(s) 329
PspFI CCCAGC 1 cut(s) 309
PspN4I GGNNCC 2 cut(s) 171, 361
PspPI GGNCC 2 cut(s) 83, 302
PsuI RGATCY 2 cut(s) 169, 744
RsaI GTAC 2 cut(s) 228, 554
RsaNI GTAC 2 cut(s) 227, 553
RseI CAYNNNNRTG 2 cut(s) 207, 669
SaqAI TTAA 2 cut(s) 165, 491
SatI GCNGC 2 cut(s) 183, 795
Sau3AI GATC 4 cut(s) 169, 730, 744, 837
Sau96I GGNCC 2 cut(s) 83, 302
SchI GAGTC 1 cut(s) 329
SinI GGWCC 1 cut(s) 83
SmiMI CAYNNNNRTG 2 cut(s) 207, 669
Sse9I AATT 4 cut(s) 385, 412, 471, 868
SsiI CCGC 1 cut(s) 378
SspMI CTAG 4 cut(s) 306, 323, 701, 889
StyI CCWWGG 1 cut(s) 685
TaaI ACNGT 2 cut(s) 534, 588
TasI AATT 4 cut(s) 385, 412, 471, 868
TatI WGTACW 1 cut(s) 552
TfiI GAWTC 2 cut(s) 62, 579
Tru1I TTAA 2 cut(s) 165, 491
Tru9I TTAA 2 cut(s) 165, 491
TscAI CASTG 4 cut(s) 64, 76, 361, 778
TseFI GTSAC 1 cut(s) 721
TseI GCWGC 2 cut(s) 182, 794
Tsp45I GTSAC 1 cut(s) 721
TspDTI ATGAA 5 cut(s) 41, 197, 361, 552, 750
TspRI CASTG 4 cut(s) 64, 76, 361, 778
VpaK11BI GGWCC 1 cut(s) 83
XagI CCTNNNNNAGG 1 cut(s) 752
XapI RAATTY 1 cut(s) 385
XmnI GAANNNNTTC 1 cut(s) 785
XspI CTAG 4 cut(s) 306, 323, 701, 889
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.