AT2G36160

mRNA 5'-UTR binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0006061
Physical Location & Seq
Forward (+)
15169818 .. 15171459
1642 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G36160.1

Sequence Viewer

Length: 453 bp
ATGTCAAAGAGAAAGACTAAAGAGCCAAAGGTCGATGTTGTGACTCTTGGACCATCTGTTCGTGAGGGAGAGCAAGTTTTCGGTGTTGTCCACATCTTTGCTTCATTCAACGACACTTTCATTCATGTTACTGATTTGTCTGGTCGTGAAACTCTTGTCCGTATCACCGGTGGAATGAAGGTGAAAGCTGATAGAGATGAGTCCTCACCTTACGCAGCTATGCTTGCAGCACAGGATGTTGCTCAGCGATGCAAGGAACTTGGTATCACTGCCATGCATGTGAAGCTCCGTGCCACAGGTGGAAACAAGACCAAGACACCTGGTCCTGGAGCACAGTCTGCCCTTAGAGCCCTTGCTCGTTCCGGCATGAAAATAGGCCGTATTGAGGATGTTACTCCCATCCCAACAGACAGTACCCGCAGAAAGGGTGGTAGAAGAGGAAGAAGGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000122 GO:0000184 GO:0000462 GO:0000956 GO:0002181 GO:0002262 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005840 GO:0005844 GO:0005886 GO:0005911 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009506 GO:0009507 GO:0009536 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015031 GO:0015833 GO:0015935 GO:0016020 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030054 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030490 GO:0030684 GO:0030686 GO:0031090 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032040 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034101 GO:0034248 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042788 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045182 GO:0045184 GO:0045892 GO:0045934 GO:0046483 GO:0046700 GO:0046907 GO:0048027 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0055044 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0071944 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0097159 GO:0098588 GO:0098805 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

150

Amino Acids

16.26

Weight (kDa)

10.6

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 28 - 146 1.7e-47 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 418
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 3 cut(s) 326, 385, 424
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 109
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 2 cut(s) 319, 325
AloI GAACNNNNNNTCC 2 cut(s) 42, 74
AluBI AGCT 3 cut(s) 188, 218, 286
AluI AGCT 3 cut(s) 188, 218, 286
Alw21I GWGCWC 1 cut(s) 334
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 2 cut(s) 215, 227
ArsI GACNNNNNNTTYG 2 cut(s) 42, 74
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 50, 323
AsuHPI GGTGA 3 cut(s) 157, 193, 198
AvaII GGWCC 2 cut(s) 50, 323
BanII GRGCYC 1 cut(s) 352
Bbv12I GWGCWC 1 cut(s) 334
BbvI GCAGC 2 cut(s) 227, 239
BccI CCATC 2 cut(s) 61, 407
BceAI ACGGC 1 cut(s) 363
BciT130I CCWGG 2 cut(s) 321, 327
BisI GCNGC 2 cut(s) 216, 228
BlpI GCTNAGC 1 cut(s) 243
BlsI GCNGC 2 cut(s) 217, 229
Bme1390I CCNGG 2 cut(s) 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 50, 323
BmrFI CCNGG 2 cut(s) 321, 327
BmsI GCATC 1 cut(s) 239
BpmI CTGGAG 1 cut(s) 348
Bpu1102I GCTNAGC 1 cut(s) 243
BsaWI WCCGGW 1 cut(s) 167
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 3 cut(s) 326, 385, 424
Bse118I RCCGGY 1 cut(s) 167
BseBI CCWGG 2 cut(s) 321, 327
BseGI GGATG 3 cut(s) 241, 394, 399
BseLI CCNNNNNNNGG 3 cut(s) 326, 385, 424
BseMII CTCAG 1 cut(s) 257
BseXI GCAGC 2 cut(s) 227, 239
BshFI GGCC 1 cut(s) 378
BshTI ACCGGT 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 334
BsiSI CCGG 2 cut(s) 168, 363
BslI CCNNNNNNNGG 3 cut(s) 326, 385, 424
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 2 cut(s) 334, 352
Bsp1720I GCTNAGC 1 cut(s) 243
BspACI CCGC 1 cut(s) 418
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 1 cut(s) 256
BsrFI RCCGGY 1 cut(s) 167
BssAI RCCGGY 1 cut(s) 167
Bst2UI CCWGG 2 cut(s) 321, 327
Bst4CI ACNGT 2 cut(s) 336, 413
Bst6I CTCTTC 1 cut(s) 430
BstAPI GCANNNNNTGC 1 cut(s) 338
BstC8I GCNNGC 1 cut(s) 225
BstDEI CTNAG 2 cut(s) 243, 344
BstF5I GGATG 3 cut(s) 241, 394, 399
BstMWI GCNNNNNNNGC 4 cut(s) 224, 283, 338, 347
BstNI CCWGG 2 cut(s) 321, 327
BstNSI RCATGY 1 cut(s) 281
BstSCI CCNGG 2 cut(s) 319, 325
BstV1I GCAGC 2 cut(s) 227, 239
BsuRI GGCC 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 262
BtsCI GGATG 3 cut(s) 241, 394, 399
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 1 cut(s) 267
Cac8I GCNNGC 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 50, 323
CsiI ACCWGGT 1 cut(s) 319
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 4 cut(s) 125, 274, 278, 367
CviJI RGCY 7 cut(s) 25, 188, 218, 286, 350, 378, 448
CviKI_1 RGCY 7 cut(s) 25, 188, 218, 286, 350, 378, 448
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 243, 344
DriI GACNNNNNGTC 1 cut(s) 321
Eam1104I CTCTTC 1 cut(s) 430
Eam1105I GACNNNNNGTC 1 cut(s) 321
EarI CTCTTC 1 cut(s) 430
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 50, 323
EcoRII CCWGG 2 cut(s) 319, 325
EcoT22I ATGCAT 1 cut(s) 279
EcoT38I GRGCYC 1 cut(s) 352
FaeI CATG 4 cut(s) 128, 277, 281, 370
FaiI YATR 5 cut(s) 126, 221, 275, 279, 368
FatI CATG 4 cut(s) 124, 273, 277, 366
FauI CCCGC 1 cut(s) 425
Fnu4HI GCNGC 2 cut(s) 216, 228
FokI GGATG 3 cut(s) 248, 386, 401
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 216, 228
GluI GCNGC 2 cut(s) 216, 228
GsuI CTGGAG 1 cut(s) 348
HaeIII GGCC 1 cut(s) 378
HapII CCGG 2 cut(s) 168, 363
Hin1II CATG 4 cut(s) 128, 277, 281, 370
HinfI GANTC 2 cut(s) 43, 200
HpaII CCGG 2 cut(s) 168, 363
HphI GGTGA 3 cut(s) 157, 193, 198
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 1 cut(s) 452
Hpy188III TCNNGA 2 cut(s) 62, 146
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 172, 438
HpyCH4III ACNGT 2 cut(s) 336, 413
HpyCH4V TGCA 3 cut(s) 227, 252, 277
HpyF10VI GCNNNNNNNGC 4 cut(s) 224, 283, 338, 347
HpyF3I CTNAG 2 cut(s) 243, 344
Hsp92II CATG 4 cut(s) 128, 277, 281, 370
LmnI GCTCC 2 cut(s) 291, 329
LpnPI CCDG 9 cut(s) 126, 181, 218, 282, 306, 312, 333, 339, 376
Lsp1109I GCAGC 2 cut(s) 227, 239
LweI GCATC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 319
MaeIII GTNAC 3 cut(s) 40, 127, 391
MboII GAAGA 2 cut(s) 447, 453
MhlI GDGCHC 2 cut(s) 334, 352
MlyI GAGTC 2 cut(s) 37, 209
MnlI CCTC 4 cut(s) 58, 214, 379, 431
Mph1103I ATGCAT 1 cut(s) 279
MslI CAYNNNNRTG 2 cut(s) 272, 278
MspI CCGG 2 cut(s) 168, 363
MspR9I CCNGG 2 cut(s) 321, 327
MvaI CCWGG 2 cut(s) 321, 327
MwoI GCNNNNNNNGC 4 cut(s) 224, 283, 338, 347
NlaIII CATG 4 cut(s) 128, 277, 281, 370
NmuCI GTSAC 1 cut(s) 40
NsiI ATGCAT 1 cut(s) 279
NspI RCATGY 1 cut(s) 281
PfoI TCCNGGA 1 cut(s) 325
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 2 cut(s) 217, 229
PleI GAGTC 2 cut(s) 37, 208
PpsI GAGTC 2 cut(s) 37, 208
Psp6I CCWGG 2 cut(s) 319, 325
PspGI CCWGG 2 cut(s) 319, 325
PspPI GGNCC 2 cut(s) 50, 323
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 2 cut(s) 272, 278
SatI GCNGC 2 cut(s) 216, 228
Sau96I GGNCC 2 cut(s) 50, 323
SchI GAGTC 2 cut(s) 37, 209
ScrFI CCNGG 2 cut(s) 321, 327
SduI GDGCHC 2 cut(s) 334, 352
SetI ASST 8 cut(s) 33, 183, 190, 211, 220, 288, 301, 322
SexAI ACCWGGT 1 cut(s) 319
SfaNI GCATC 1 cut(s) 239
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 2 cut(s) 272, 278
SsiI CCGC 1 cut(s) 418
StyD4I CCNGG 2 cut(s) 319, 325
TaaI ACNGT 2 cut(s) 336, 413
TaqI TCGA 1 cut(s) 33
TscAI CASTG 1 cut(s) 274
TseFI GTSAC 1 cut(s) 40
TseI GCWGC 2 cut(s) 215, 227
Tsp45I GTSAC 1 cut(s) 40
TspDTI ATGAA 5 cut(s) 93, 109, 113, 191, 383
TspGWI ACGGA 2 cut(s) 149, 278
TspRI CASTG 1 cut(s) 274
VpaK11BI GGWCC 2 cut(s) 50, 323
XceI RCATGY 1 cut(s) 281
Zsp2I ATGCAT 1 cut(s) 279
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.