Prupe.4G079500_v2.0.a1

mRNA 5'-UTR binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0006061
Physical Location & Seq
Reverse (-)
3853384 .. 3856260
2877 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G079500.2

Sequence Viewer

Length: 453 bp
ATGTCAAGGAGGAAGGTTAGGGAACCAAAAGAAGAAAACGTTACGCTTGGTCCTACCCTCAAGGATGGAGAATATGCCTTTGGTGTGGCACACATTTTTGCGTCATTTAATGACACATTCATTCATGTGACAGATCTGTCAGGAAGAGAAACCTTGGTGCGCATAACTGGTGGTATGAAGGTGAAAGCTGACAGAGATGAGTCTTCCCCGTATGCAGCTATGCTTGCAGCACAGGATGTTGCACAGAGATGCAAGGAACTAGGTATTACTGCTCTTCATATCAAGCTCCGTGCTACTGGTGGTAACAAAACCAAAACCCCTGGTCCAGGTGCCCAGTCTGCCCTCCGTGCCCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATTCCTACTGATAGCACCCGTAGAAAGGGCGGCCGAAGAGGAAGGAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000028 GO:0000122 GO:0000184 GO:0000462 GO:0000956 GO:0002181 GO:0002262 GO:0002376 GO:0002520 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006355 GO:0006357 GO:0006364 GO:0006396 GO:0006401 GO:0006402 GO:0006412 GO:0006413 GO:0006417 GO:0006518 GO:0006605 GO:0006612 GO:0006613 GO:0006614 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006996 GO:0007275 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009889 GO:0009890 GO:0009892 GO:0009987 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0015031 GO:0015833 GO:0015935 GO:0016043 GO:0016070 GO:0016071 GO:0016072 GO:0019219 GO:0019222 GO:0019439 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030097 GO:0030099 GO:0030154 GO:0030218 GO:0030490 GO:0030684 GO:0030686 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032040 GO:0032268 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033365 GO:0034101 GO:0034248 GO:0034470 GO:0034613 GO:0034622 GO:0034641 GO:0034645 GO:0034655 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042592 GO:0042886 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044267 GO:0044270 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0045047 GO:0045182 GO:0045184 GO:0045892 GO:0045934 GO:0046483 GO:0046700 GO:0046907 GO:0048027 GO:0048513 GO:0048519 GO:0048523 GO:0048534 GO:0048731 GO:0048856 GO:0048869 GO:0048872 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051246 GO:0051252 GO:0051253 GO:0051641 GO:0051649 GO:0060255 GO:0065003 GO:0065007 GO:0065008 GO:0070013 GO:0070181 GO:0070727 GO:0070925 GO:0070972 GO:0071702 GO:0071704 GO:0071705 GO:0071826 GO:0071840 GO:0072594 GO:0072599 GO:0072657 GO:0080090 GO:0090150 GO:0090304 GO:0097159 GO:1901360 GO:1901361 GO:1901363 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1902679 GO:1903506 GO:1903507 GO:1990904 GO:2000112 GO:2000113 GO:2001141
KEGG Pathways
Metabolic & Signaling
ko00550 ko01100 ko01502 ko03010 map00550 map01100 map01502 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.36

Weight (kDa)

10.56

Isoelectric Point (pI)

55.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
Acc16I TGCGCA 1 cut(s) 161
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 1 cut(s) 429
AclI AACGTT 1 cut(s) 39
AcoI YGGCCR 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 326, 424
AjnI CCWGG 2 cut(s) 319, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 3 cut(s) 188, 218, 286
AluI AGCT 3 cut(s) 188, 218, 286
AoxI GGCC 1 cut(s) 430
ApeKI GCWGC 2 cut(s) 215, 227
AspLEI GCGC 1 cut(s) 162
AspS9I GGNCC 2 cut(s) 50, 323
AsuHPI GGTGA 1 cut(s) 193
AvaII GGWCC 2 cut(s) 50, 323
BaeGI GKGCMC 2 cut(s) 334, 352
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 1 cut(s) 195
BbvI GCAGC 2 cut(s) 227, 239
BccI CCATC 1 cut(s) 59
BciT130I CCWGG 2 cut(s) 321, 327
BfaI CTAG 1 cut(s) 260
BglII AGATCT 1 cut(s) 133
BisI GCNGC 3 cut(s) 216, 228, 430
BlsI GCNGC 3 cut(s) 217, 229, 431
Bme1390I CCNGG 2 cut(s) 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 2 cut(s) 24, 331
BmrFI CCNGG 2 cut(s) 321, 327
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 1 cut(s) 195
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 2 cut(s) 153, 319
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 424
Bse1I ACTGG 3 cut(s) 172, 301, 334
BseBI CCWGG 2 cut(s) 321, 327
BseDI CCNNGG 2 cut(s) 153, 319
BseGI GGATG 3 cut(s) 70, 241, 394
BseLI CCNNNNNNNGG 2 cut(s) 326, 424
BseNI ACTGG 3 cut(s) 172, 301, 334
BseSI GKGCMC 2 cut(s) 334, 352
BseX3I CGGCCG 1 cut(s) 430
BseXI GCAGC 2 cut(s) 227, 239
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 432
BshNI GGYRCC 1 cut(s) 329
BsiEI CGRYCG 1 cut(s) 433
BslI CCNNNNNNNGG 2 cut(s) 326, 424
BsnI GGCC 1 cut(s) 432
Bsp1286I GDGCHC 2 cut(s) 334, 352
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 429
BspANI GGCC 1 cut(s) 432
BspLI GGNNCC 2 cut(s) 24, 331
BspQI GCTCTTC 1 cut(s) 279
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 3 cut(s) 172, 301, 334
BssECI CCNNGG 2 cut(s) 153, 319
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 153
Bst2UI CCWGG 2 cut(s) 321, 327
Bst6I CTCTTC 3 cut(s) 139, 279, 430
BstC8I GCNNGC 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 70, 241, 394
BstHHI GCGC 1 cut(s) 162
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 2 cut(s) 321, 327
BstSCI CCNGG 2 cut(s) 319, 325
BstSLI GKGCMC 2 cut(s) 334, 352
BstV1I GCAGC 2 cut(s) 227, 239
BstV2I GAAGAC 1 cut(s) 195
BstX2I RGATCY 1 cut(s) 133
BstYI RGATCY 1 cut(s) 133
BstZI CGGCCG 1 cut(s) 430
BsuRI GGCC 1 cut(s) 432
BtsCI GGATG 3 cut(s) 70, 241, 394
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 162
Cfr13I GGNCC 2 cut(s) 50, 323
CseI GACGC 1 cut(s) 90
CviAII CATG 1 cut(s) 125
CviJI RGCY 5 cut(s) 188, 218, 286, 432, 448
CviKI_1 RGCY 5 cut(s) 188, 218, 286, 432, 448
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 430
EagI CGGCCG 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 139, 279, 430
EarI CTCTTC 3 cut(s) 139, 279, 430
EclXI CGGCCG 1 cut(s) 430
Eco130I CCWWGG 1 cut(s) 153
Eco47I GGWCC 2 cut(s) 50, 323
Eco52I CGGCCG 1 cut(s) 430
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 319, 325
EcoT14I CCWWGG 1 cut(s) 153
ErhI CCWWGG 1 cut(s) 153
FaeI CATG 1 cut(s) 128
FaiI YATR 8 cut(s) 75, 126, 164, 176, 213, 221, 279, 383
FatI CATG 1 cut(s) 124
Fnu4HI GCNGC 3 cut(s) 216, 228, 430
FokI GGATG 3 cut(s) 77, 248, 401
Fsp4HI GCNGC 3 cut(s) 216, 228, 430
FspAI RTGCGCAY 1 cut(s) 161
FspBI CTAG 1 cut(s) 260
FspI TGCGCA 1 cut(s) 161
GlaI GCGC 1 cut(s) 161
GluI GCNGC 3 cut(s) 216, 228, 430
HaeIII GGCC 1 cut(s) 432
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 162
Hin1II CATG 1 cut(s) 128
Hin6I GCGC 1 cut(s) 160
HinP1I GCGC 1 cut(s) 160
HinfI GANTC 2 cut(s) 200, 394
HphI GGTGA 1 cut(s) 193
Hpy188III TCNNGA 2 cut(s) 141, 363
HpyAV CCTTC 3 cut(s) 7, 172, 435
HpyCH4IV ACGT 1 cut(s) 39
HpyCH4V TGCA 4 cut(s) 215, 227, 242, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
HpySE526I ACGT 1 cut(s) 39
Hsp92II CATG 1 cut(s) 128
HspAI GCGC 1 cut(s) 160
Kzo9I GATC 1 cut(s) 133
LguI GCTCTTC 1 cut(s) 279
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 2 cut(s) 227, 239
LweI GCATC 1 cut(s) 239
MaeI CTAG 1 cut(s) 260
MaeII ACGT 1 cut(s) 39
MaeIII GTNAC 4 cut(s) 40, 127, 302, 391
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 44, 156, 195, 266, 447
MflI RGATCY 1 cut(s) 133
MhlI GDGCHC 2 cut(s) 334, 352
MluCI AATT 2 cut(s) 372, 399
MlyI GAGTC 2 cut(s) 209, 388
MnlI CCTC 6 cut(s) 3, 68, 353, 379, 431, 438
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 2 cut(s) 125, 247
MspR9I CCNGG 2 cut(s) 321, 327
MvaI CCWGG 2 cut(s) 321, 327
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 128
NlaIV GGNNCC 2 cut(s) 24, 331
NmuCI GTSAC 2 cut(s) 127, 391
NsbI TGCGCA 1 cut(s) 161
PciSI GCTCTTC 1 cut(s) 279
PkrI GCNGC 3 cut(s) 217, 229, 431
PleI GAGTC 2 cut(s) 208, 388
PpsI GAGTC 2 cut(s) 208, 388
Psp1406I AACGTT 1 cut(s) 39
Psp6I CCWGG 2 cut(s) 319, 325
PspGI CCWGG 2 cut(s) 319, 325
PspN4I GGNNCC 2 cut(s) 24, 331
PspPI GGNCC 2 cut(s) 50, 323
PsuI RGATCY 1 cut(s) 133
RseI CAYNNNNRTG 2 cut(s) 125, 247
SapI GCTCTTC 1 cut(s) 279
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 3 cut(s) 216, 228, 430
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 2 cut(s) 50, 323
SchI GAGTC 2 cut(s) 209, 388
ScrFI CCNGG 2 cut(s) 321, 327
SduI GDGCHC 2 cut(s) 334, 352
SetI ASST 9 cut(s) 18, 42, 155, 183, 190, 220, 265, 288, 331
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 2 cut(s) 125, 247
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 2 cut(s) 372, 399
SsiI CCGC 1 cut(s) 429
SspMI CTAG 1 cut(s) 260
StyD4I CCNGG 2 cut(s) 319, 325
StyI CCWWGG 1 cut(s) 153
TaiI ACGT 1 cut(s) 42
TasI AATT 2 cut(s) 372, 399
TauI GCSGC 1 cut(s) 432
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 2 cut(s) 127, 391
TseI GCWGC 2 cut(s) 215, 227
Tsp45I GTSAC 2 cut(s) 127, 391
TspDTI ATGAA 4 cut(s) 109, 113, 191, 266
TspGWI ACGGA 2 cut(s) 278, 335
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XspI CTAG 1 cut(s) 260
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.