MD10G1263300.v1.1

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
OG0006061
Physical Location & Seq
Forward (+)
35755935 .. 35758165
2231 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1263300.v1.1.491

Sequence Viewer

Length: 453 bp
ATGTCGAAGAAGAAGGTTAGAGAGCCAAAGGAAGACAATGTCACCCTTGGTCCCATCCTCAAGGATGGAGAACATGCCTTTGGTGTTGCACACATTTATGCGTCATTCAATGACACATTCATTCATGTGACTGATCTGTCAGGAAGAGAAACCCTTGTTCGTATCACCGGTGGTATGAAGGTGAAGGCTGACAGGGACGAGTCTTCCCCATATGCTGCTATGCTTGCAGCACAGGATGTTGCGCAGAGATGCAAGGAATTGGGCATTACTGCACTTCATATTAAGCTCCGTGCCACTGGCGGGAACAAAACAAAAACACCTGGTCCAGGTGCCCAGTCTGCCCTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATTCCAACTGACAGCACCCGTAGAAAGGGTGGAAGGAGAGGAAGGAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.29

Weight (kDa)

10.35

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 28 - 146 8.5e-48 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
Acc16I TGCGCA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 329
AciI CCGC 1 cut(s) 300
AfiI CCNNNNNNNGG 3 cut(s) 300, 326, 424
AgeI ACCGGT 1 cut(s) 167
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 2 cut(s) 319, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
Alw21I GWGCWC 1 cut(s) 352
ApeKI GCWGC 2 cut(s) 215, 227
AsiGI ACCGGT 1 cut(s) 167
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 50, 323
AsuHPI GGTGA 3 cut(s) 34, 157, 193
AvaII GGWCC 2 cut(s) 50, 323
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BbsI GAAGAC 2 cut(s) 39, 195
Bbv12I GWGCWC 1 cut(s) 352
BbvI GCAGC 2 cut(s) 202, 239
BccI CCATC 2 cut(s) 59, 62
BciT130I CCWGG 2 cut(s) 321, 327
BisI GCNGC 2 cut(s) 216, 228
BlsI GCNGC 2 cut(s) 217, 229
Bme1390I CCNGG 2 cut(s) 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 2 cut(s) 52, 331
BmrFI CCNGG 2 cut(s) 321, 327
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 39, 195
BpuEI CTTGAG 1 cut(s) 44
BsaJI CCNNGG 1 cut(s) 46
BsaWI WCCGGW 1 cut(s) 167
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 326, 424
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 2 cut(s) 301, 334
BseBI CCWGG 2 cut(s) 321, 327
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 4 cut(s) 54, 70, 241, 394
BseLI CCNNNNNNNGG 3 cut(s) 300, 326, 424
BseNI ACTGG 2 cut(s) 301, 334
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 2 cut(s) 202, 239
BsgI GTGCAG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 352
BsiSI CCGG 1 cut(s) 168
BslFI GGGAC 2 cut(s) 36, 209
BslI CCNNNNNNNGG 3 cut(s) 300, 326, 424
BsmFI GGGAC 2 cut(s) 36, 209
Bsp1286I GDGCHC 2 cut(s) 334, 352
Bsp143I GATC 1 cut(s) 133
BspACI CCGC 1 cut(s) 300
BspLI GGNNCC 2 cut(s) 52, 331
BspT107I GGYRCC 1 cut(s) 329
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 2 cut(s) 301, 334
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 321, 327
Bst6I CTCTTC 1 cut(s) 139
BstC8I GCNNGC 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 4 cut(s) 54, 70, 241, 394
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 2 cut(s) 321, 327
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 2 cut(s) 319, 325
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 202, 239
BstV2I GAAGAC 2 cut(s) 39, 195
BtsCI GGATG 4 cut(s) 54, 70, 241, 394
BtsIMutI CAGTG 1 cut(s) 294
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 244
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 50, 323
CseI GACGC 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 319
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 2 cut(s) 74, 125
CviJI RGCY 4 cut(s) 25, 188, 286, 448
CviKI_1 RGCY 4 cut(s) 25, 188, 286, 448
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 46
Eco47I GGWCC 2 cut(s) 50, 323
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 319, 325
EcoT14I CCWWGG 1 cut(s) 46
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 2 cut(s) 77, 128
FaiI YATR 9 cut(s) 75, 99, 126, 176, 211, 213, 221, 279, 383
FaqI GGGAC 2 cut(s) 36, 209
FatI CATG 2 cut(s) 73, 124
FauI CCCGC 1 cut(s) 293
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 216, 228
FokI GGATG 4 cut(s) 41, 77, 248, 401
Fsp4HI GCNGC 2 cut(s) 216, 228
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 216, 228
HapII CCGG 1 cut(s) 168
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 244
Hin1II CATG 2 cut(s) 77, 128
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 2 cut(s) 200, 394
HpaII CCGG 1 cut(s) 168
HphI GGTGA 3 cut(s) 34, 157, 193
Hpy188III TCNNGA 2 cut(s) 141, 363
HpyAV CCTTC 5 cut(s) 7, 172, 178, 426, 435
HpyCH4V TGCA 4 cut(s) 89, 227, 252, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
Hsp92II CATG 2 cut(s) 77, 128
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 2 cut(s) 202, 239
LweI GCATC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 319
MaeIII GTNAC 3 cut(s) 40, 127, 391
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 19, 22, 44, 156, 195
MhlI GDGCHC 2 cut(s) 334, 352
MluCI AATT 3 cut(s) 257, 372, 399
MlyI GAGTC 2 cut(s) 209, 388
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 5 cut(s) 68, 353, 379, 431, 438
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 96, 125
MspI CCGG 1 cut(s) 168
MspR9I CCNGG 2 cut(s) 321, 327
MvaI CCWGG 2 cut(s) 321, 327
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 133
NlaIII CATG 2 cut(s) 77, 128
NlaIV GGNNCC 2 cut(s) 52, 331
NmuCI GTSAC 3 cut(s) 40, 127, 391
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 38
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 2 cut(s) 217, 229
PleI GAGTC 2 cut(s) 208, 388
PpsI GAGTC 2 cut(s) 208, 388
Psp6I CCWGG 2 cut(s) 319, 325
PspGI CCWGG 2 cut(s) 319, 325
PspN4I GGNNCC 2 cut(s) 52, 331
PspPI GGNCC 2 cut(s) 50, 323
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 96, 125
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 216, 228
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 2 cut(s) 50, 323
SchI GAGTC 2 cut(s) 209, 388
ScrFI CCNGG 2 cut(s) 321, 327
SduI GDGCHC 2 cut(s) 334, 352
SetI ASST 5 cut(s) 18, 183, 288, 322, 331
SexAI ACCWGGT 1 cut(s) 319
SfaNI GCATC 1 cut(s) 239
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 2 cut(s) 96, 125
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 257, 372, 399
SsiI CCGC 1 cut(s) 300
StyD4I CCNGG 2 cut(s) 319, 325
StyI CCWWGG 1 cut(s) 46
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 257, 372, 399
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 1 cut(s) 301
TseFI GTSAC 3 cut(s) 40, 127, 391
TseI GCWGC 2 cut(s) 215, 227
Tsp45I GTSAC 3 cut(s) 40, 127, 391
TspDTI ATGAA 4 cut(s) 109, 113, 191, 266
TspGWI ACGGA 2 cut(s) 278, 335
TspRI CASTG 1 cut(s) 301
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.