Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

9621147 .. 9623338

Gene Structure 2192 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG116200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCGAAGCATAAGAAGACTAGGGAGCCAAAGGAAGAGAATGTTACTCTTGGTCCTGCTGTTAGAGATGGAGAACATGTTTTTGGTGTTGCCCACATTTTCGCCTCATTTAATGACACATTCATTCATGTGACTGATCTCTCTGGAAGGGAAACTTTGGTCCGTATCACTGGTGGTATGAAGGTGAAAGCCGACAGGGATGAGTCTTCCCCATATGCAGCTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTGGGTATTACTGCTCTTCATATTAAGCTGCGGGCAACTGGTGGCAACAAAACTAAGACACCTGGCCCTGGTGCCCAGTCTGCACTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATTCCTACCGATAGCACCCGTAGAAAGGGTGGCAGAAGAGGAAGGAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

151

Amino Acids

16.42

Weight (kDa)

10.56

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	29 - 147	9.4e-47	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	329, 427
AflIII	ACRYGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	322, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	221, 289
AluI	AGCT	2 cut(s)	221, 289
Alw21I	GWGCWC	1 cut(s)	355
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	218, 230, 289
AspS9I	GGNCC	3 cut(s)	53, 160, 326
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	53, 160
BaeGI	GKGCMC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	23, 198
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	230, 242, 276
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	324, 330
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	3 cut(s)	219, 231, 290
BlsI	GCNGC	3 cut(s)	220, 232, 291
Bme1390I	CCNGG	2 cut(s)	324, 330
Bme18I	GGWCC	2 cut(s)	53, 160
BmgT120I	GGNCC	3 cut(s)	53, 160, 326
BmiI	GGNNCC	2 cut(s)	27, 334
BmrFI	CCNGG	2 cut(s)	324, 330
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	23, 198
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 427
Bse1I	ACTGG	3 cut(s)	175, 304, 337
BseBI	CCWGG	2 cut(s)	324, 330
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	205, 244, 397
BseLI	CCNNNNNNNGG	2 cut(s)	329, 427
BseNI	ACTGG	3 cut(s)	175, 304, 337
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	230, 242, 276
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	329, 427
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	337, 355
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	27, 334
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	175, 304, 337
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	324, 330
Bst6I	CTCTTC	3 cut(s)	30, 282, 433
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	228, 294
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	205, 244, 397
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
BstNI	CCWGG	2 cut(s)	324, 330
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	322, 328
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	230, 242, 276
BstV2I	GAAGAC	2 cut(s)	23, 198
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	205, 244, 397
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	228, 294
Cfr13I	GGNCC	3 cut(s)	53, 160, 326
CviAII	CATG	2 cut(s)	77, 128
CviJI	RGCY	6 cut(s)	28, 191, 221, 289, 327, 451
CviKI_1	RGCY	6 cut(s)	28, 191, 221, 289, 327, 451
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	350
Eam1104I	CTCTTC	3 cut(s)	30, 282, 433
EarI	CTCTTC	3 cut(s)	30, 282, 433
Eco47I	GGWCC	2 cut(s)	53, 160
EcoRII	CCWGG	2 cut(s)	322, 328
FaeI	CATG	2 cut(s)	80, 131
FaiI	YATR	9 cut(s)	12, 78, 129, 179, 214, 216, 224, 282, 386
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	2 cut(s)	76, 127
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	219, 231, 290
FokI	GGATG	3 cut(s)	212, 251, 404
Fsp4HI	GCNGC	3 cut(s)	219, 231, 290
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	3 cut(s)	219, 231, 290
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	80, 131
HinfI	GANTC	2 cut(s)	203, 397
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	144, 366
HpyAV	CCTTC	3 cut(s)	141, 175, 438
HpyCH4V	TGCA	4 cut(s)	218, 230, 255, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	80, 131
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	230, 242, 276
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	43, 130, 394
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	5 cut(s)	28, 47, 198, 269, 450
MhlI	GDGCHC	2 cut(s)	337, 355
MluCI	AATT	3 cut(s)	260, 375, 402
MlyI	GAGTC	2 cut(s)	212, 391
MnlI	CCTC	4 cut(s)	115, 382, 434, 441
MseI	TTAA	2 cut(s)	111, 285
MslI	CAYNNNNRTG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	324, 330
MvaI	CCWGG	2 cut(s)	324, 330
MwoI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	80, 131
NlaIV	GGNNCC	2 cut(s)	27, 334
NmuCI	GTSAC	2 cut(s)	130, 394
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	220, 232, 291
PleI	GAGTC	2 cut(s)	211, 391
PpsI	GAGTC	2 cut(s)	211, 391
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	322, 328
PspGI	CCWGG	2 cut(s)	322, 328
PspN4I	GGNNCC	2 cut(s)	27, 334
PspPI	GGNCC	3 cut(s)	53, 160, 326
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	111, 285
SatI	GCNGC	3 cut(s)	219, 231, 290
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	3 cut(s)	53, 160, 326
SchI	GAGTC	2 cut(s)	212, 391
ScrFI	CCNGG	2 cut(s)	324, 330
SduI	GDGCHC	2 cut(s)	337, 355
SetI	ASST	4 cut(s)	186, 223, 291, 325
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	2 cut(s)	53, 160
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	260, 375, 402
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	322, 328
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	260, 375, 402
Tru1I	TTAA	2 cut(s)	111, 285
Tru9I	TTAA	2 cut(s)	111, 285
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	130, 394
TseI	GCWGC	3 cut(s)	218, 230, 289
Tsp45I	GTSAC	2 cut(s)	130, 394
TspDTI	ATGAA	4 cut(s)	112, 116, 194, 269
TspGWI	ACGGA	2 cut(s)	152, 338
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	53, 160
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.