Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Forward (+)

11642715 .. 11643823

Gene Structure 1109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0141300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGATTCCAAACAACCCGACCCGAAATCCGCTAACCCTTCGGATCCCAATCGTCTTCTTCCCCAAGACGACAGGATCAAGTTCGAAATTTCCAAGACGGAAGATGGTGCCAAGAAAGGACAAGCAGGACCACCCGAAACTTCGTCGTCTTCGTCAGTCACAGAGGAATCCGGCAGCGAAAACGTCGTAGTGGAAGACCACGACAACGACGGTTTCAGAACGCCGGTGAATCACAGAATTCCCGTGATCACAGAGTGCCCGCCTGCACCGAAAAAGACGAGAATACCCCTGCGGAAACGAAAAGCGCTTAATTCGCCAAGCGCTTCTTCTCGCAAGAGAATCCAGATTAAGCTCTCGGAAGAAGAATTCGACGCGCTGTTTCCGCCGCAGTACGATTTTCGCTGCAAGATCAAGAAAGCCAGCCCAGATGGCGCCGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

146

Amino Acids

16.14

Weight (kDa)

8.53

Isoelectric Point (pI)

70.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 431
AccII	CGCG	1 cut(s)	374
AciI	CCGC	5 cut(s)	30, 260, 292, 383, 386
AclWI	GGATC	3 cut(s)	38, 51, 83
AcsI	RAATTY	3 cut(s)	87, 237, 365
AcyI	GRCGYC	1 cut(s)	432
AdeI	CACNNNGTG	1 cut(s)	255
AfaI	GTAC	1 cut(s)	392
AfeI	AGCGCT	2 cut(s)	306, 322
AjuI	GAANNNNNNNTTGG	2 cut(s)	310, 342
AluBI	AGCT	1 cut(s)	352
AluI	AGCT	1 cut(s)	352
AlwI	GGATC	3 cut(s)	38, 51, 83
Aor51HI	AGCGCT	2 cut(s)	306, 322
ApeKI	GCWGC	2 cut(s)	174, 402
ApoI	RAATTY	3 cut(s)	87, 237, 365
AspLEI	GCGC	4 cut(s)	307, 323, 376, 434
AspS9I	GGNCC	1 cut(s)	128
AsuHPI	GGTGA	1 cut(s)	238
AsuII	TTCGAA	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	128
BaeGI	GKGCMC	1 cut(s)	260
BamHI	GGATCC	1 cut(s)	43
BanI	GGYRCC	2 cut(s)	107, 431
BbsI	GAAGAC	3 cut(s)	47, 141, 201
BbvI	GCAGC	2 cut(s)	186, 389
BccI	CCATC	2 cut(s)	98, 422
BceAI	ACGGC	1 cut(s)	419
BclI	TGATCA	1 cut(s)	246
BfoI	RGCGCY	3 cut(s)	308, 324, 435
BglI	GCCNNNNNGGC	1 cut(s)	429
BisI	GCNGC	3 cut(s)	175, 386, 403
BlsI	GCNGC	3 cut(s)	176, 387, 404
Bme18I	GGWCC	1 cut(s)	128
BmgT120I	GGNCC	1 cut(s)	128
BmiI	GGNNCC	3 cut(s)	45, 109, 433
BpiI	GAAGAC	3 cut(s)	47, 141, 201
Bpu14I	TTCGAA	1 cut(s)	84
BsaBI	GATNNNNATC	1 cut(s)	48
BsaHI	GRCGYC	1 cut(s)	432
Bse118I	RCCGGY	1 cut(s)	223
Bse8I	GATNNNNATC	1 cut(s)	48
BseJI	GATNNNNATC	1 cut(s)	48
BseSI	GKGCMC	1 cut(s)	260
BseXI	GCAGC	2 cut(s)	186, 389
BsgI	GTGCAG	1 cut(s)	249
Bsh1236I	CGCG	1 cut(s)	374
BshNI	GGYRCC	2 cut(s)	107, 431
BsiSI	CCGG	2 cut(s)	171, 224
Bsp119I	TTCGAA	1 cut(s)	84
Bsp1286I	GDGCHC	1 cut(s)	260
Bsp143I	GATC	4 cut(s)	43, 75, 246, 408
BspACI	CCGC	5 cut(s)	30, 260, 292, 383, 386
BspFNI	CGCG	1 cut(s)	374
BspLI	GGNNCC	3 cut(s)	45, 109, 433
BspPI	GGATC	3 cut(s)	38, 51, 83
BspT104I	TTCGAA	1 cut(s)	84
BspT107I	GGYRCC	2 cut(s)	107, 431
BsrFI	RCCGGY	1 cut(s)	223
BssAI	RCCGGY	1 cut(s)	223
BssMI	GATC	4 cut(s)	43, 75, 246, 408
BssNI	GRCGYC	1 cut(s)	432
Bst4CI	ACNGT	1 cut(s)	212
BstACI	GRCGYC	1 cut(s)	432
BstBI	TTCGAA	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	260, 264, 421
BstFNI	CGCG	1 cut(s)	374
BstH2I	RGCGCY	3 cut(s)	308, 324, 435
BstHHI	GCGC	4 cut(s)	307, 323, 376, 434
BstKTI	GATC	4 cut(s)	46, 78, 249, 411
BstMBI	GATC	4 cut(s)	43, 75, 246, 408
BstMWI	GCNNNNNNNGC	3 cut(s)	313, 382, 429
BstSLI	GKGCMC	1 cut(s)	260
BstUI	CGCG	1 cut(s)	374
BstV1I	GCAGC	2 cut(s)	186, 389
BstV2I	GAAGAC	3 cut(s)	47, 141, 201
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
Cac8I	GCNNGC	3 cut(s)	260, 264, 421
CfoI	GCGC	4 cut(s)	307, 323, 376, 434
Cfr10I	RCCGGY	1 cut(s)	223
Cfr13I	GGNCC	1 cut(s)	128
CseI	GACGC	1 cut(s)	380
Csp6I	GTAC	1 cut(s)	391
CviJI	RGCY	3 cut(s)	352, 419, 423
CviKI_1	RGCY	3 cut(s)	352, 419, 423
CviQI	GTAC	1 cut(s)	391
DinI	GGCGCC	1 cut(s)	433
DpnI	GATC	4 cut(s)	45, 77, 248, 410
DpnII	GATC	4 cut(s)	43, 75, 246, 408
DraIII	CACNNNGTG	1 cut(s)	255
EciI	GGCGGA	1 cut(s)	372
Eco47I	GGWCC	1 cut(s)	128
Eco47III	AGCGCT	2 cut(s)	306, 322
EcoRI	GAATTC	2 cut(s)	237, 365
EgeI	GGCGCC	1 cut(s)	433
EheI	GGCGCC	1 cut(s)	433
FalI	AAGNNNNNCTT	2 cut(s)	310, 342
FauI	CCCGC	1 cut(s)	267
FbaI	TGATCA	1 cut(s)	246
Fnu4HI	GCNGC	3 cut(s)	175, 386, 403
Fsp4HI	GCNGC	3 cut(s)	175, 386, 403
GlaI	GCGC	4 cut(s)	306, 322, 375, 433
GluI	GCNGC	3 cut(s)	175, 386, 403
HaeII	RGCGCY	3 cut(s)	308, 324, 435
HapII	CCGG	2 cut(s)	171, 224
HgaI	GACGC	1 cut(s)	380
HhaI	GCGC	4 cut(s)	307, 323, 376, 434
Hin1I	GRCGYC	1 cut(s)	432
Hin6I	GCGC	4 cut(s)	305, 321, 374, 432
HinP1I	GCGC	4 cut(s)	305, 321, 374, 432
HinfI	GANTC	4 cut(s)	5, 167, 229, 339
HpaII	CCGG	2 cut(s)	171, 224
HphI	GGTGA	1 cut(s)	238
Hpy188I	TCNGA	4 cut(s)	43, 218, 358, 440
Hpy188III	TCNNGA	2 cut(s)	343, 412
Hpy99I	CGWCG	4 cut(s)	148, 188, 212, 374
HpyAV	CCTTC	1 cut(s)	48
HpyCH4III	ACNGT	1 cut(s)	212
HpyCH4IV	ACGT	1 cut(s)	183
HpyCH4V	TGCA	2 cut(s)	266, 405
HpyF10VI	GCNNNNNNNGC	3 cut(s)	313, 382, 429
HpySE526I	ACGT	1 cut(s)	183
Hsp92I	GRCGYC	1 cut(s)	432
HspAI	GCGC	4 cut(s)	305, 321, 374, 432
KasI	GGCGCC	1 cut(s)	431
Ksp22I	TGATCA	1 cut(s)	246
Kzo9I	GATC	4 cut(s)	43, 75, 246, 408
LpnPI	CCDG	8 cut(s)	58, 111, 184, 237, 276, 302, 356, 433
Lsp1109I	GCAGC	2 cut(s)	186, 389
MaeII	ACGT	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	157
MalI	GATC	4 cut(s)	45, 77, 248, 410
MboI	GATC	4 cut(s)	43, 75, 246, 408
MboII	GAAGA	8 cut(s)	47, 50, 113, 141, 206, 318, 371, 374
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	260
MluCI	AATT	4 cut(s)	87, 237, 310, 365
Mly113I	GGCGCC	1 cut(s)	432
MnlI	CCTC	1 cut(s)	157
MseI	TTAA	2 cut(s)	309, 348
MspI	CCGG	2 cut(s)	171, 224
MvnI	CGCG	1 cut(s)	374
MwoI	GCNNNNNNNGC	3 cut(s)	313, 382, 429
NarI	GGCGCC	1 cut(s)	432
NdeII	GATC	4 cut(s)	43, 75, 246, 408
NlaIV	GGNNCC	3 cut(s)	45, 109, 433
NmuCI	GTSAC	1 cut(s)	157
NspV	TTCGAA	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	149
PfeI	GAWTC	4 cut(s)	5, 167, 229, 339
PkrI	GCNGC	3 cut(s)	176, 387, 404
PluTI	GGCGCC	1 cut(s)	435
PspN4I	GGNNCC	3 cut(s)	45, 109, 433
PspPI	GGNCC	1 cut(s)	128
PsuI	RGATCY	1 cut(s)	43
RsaI	GTAC	1 cut(s)	392
RsaNI	GTAC	1 cut(s)	391
SaqAI	TTAA	2 cut(s)	309, 348
SatI	GCNGC	3 cut(s)	175, 386, 403
Sau3AI	GATC	4 cut(s)	43, 75, 246, 408
Sau96I	GGNCC	1 cut(s)	128
SduI	GDGCHC	1 cut(s)	260
SetI	ASST	2 cut(s)	186, 354
SfoI	GGCGCC	1 cut(s)	433
SfuI	TTCGAA	1 cut(s)	84
SgrAI	CRCCGGYG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	128
Sse9I	AATT	4 cut(s)	87, 237, 310, 365
SsiI	CCGC	5 cut(s)	30, 260, 292, 383, 386
SspDI	GGCGCC	1 cut(s)	431
TaaI	ACNGT	1 cut(s)	212
TaiI	ACGT	1 cut(s)	186
TaqI	TCGA	2 cut(s)	84, 369
TasI	AATT	4 cut(s)	87, 237, 310, 365
TauI	GCSGC	1 cut(s)	388
TfiI	GAWTC	4 cut(s)	5, 167, 229, 339
Tru1I	TTAA	2 cut(s)	309, 348
Tru9I	TTAA	2 cut(s)	309, 348
TseFI	GTSAC	1 cut(s)	157
TseI	GCWGC	2 cut(s)	174, 402
Tsp45I	GTSAC	1 cut(s)	157
TspGWI	ACGGA	1 cut(s)	113
VpaK11BI	GGWCC	1 cut(s)	128
XapI	RAATTY	3 cut(s)	87, 237, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.