Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

3623448 .. 3624961

Gene Structure 1514 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G11510.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGAAGAGAAAAACTAAGGAGCCAAAGGTTGAGACTGTGACTCTTGGACCTTCTGTTCGTGAAGGAGAGCAAGTTTTTGGTGTTGTTCACATCTTTGCATCTTTCAATGACACTTTCATTCATGTGACTGATCTCTCCGGTAGAGAAACTCTCGTCCGCATCACCGGTGGCATGAAGGTGAAGGCTGACCGTGATGAGTCCTCTCCTTATGCTGCTATGCTTGCAGCTCAAGATGTTGCTCAAAGATGCAAGGAGCTTGGCATCACTGCCATGCACGTGAAGCTCCGTGCTACTGGAGGAAACAAAACCAAGACTCCAGGTCCTGGTGCTCAGTCTGCTCTTAGAGCCCTTGCTCGTTCTGGCATGAAGATTGGTCGTATTGAGGATGTGACTCCGATTCCCACAGACAGTACACGCCGAAAGGGTGGACGAAGAGGAAGAAGACTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

150

Amino Acids

16.27

Weight (kDa)

10.6

Isoelectric Point (pI)

53.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	28 - 146	1.7e-47	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	326
AciI	CCGC	1 cut(s)	160
AcvI	CACGTG	1 cut(s)	280
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgeI	ACCGGT	1 cut(s)	167
AgsI	TTSAA	1 cut(s)	109
AhdI	GACNNNNNGTC	1 cut(s)	321
AjnI	CCWGG	2 cut(s)	319, 325
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	3 cut(s)	230, 259, 286
AluI	AGCT	3 cut(s)	230, 259, 286
Alw21I	GWGCWC	1 cut(s)	334
Alw26I	GTCTC	1 cut(s)	29
AlwNI	CAGNNNCTG	1 cut(s)	326
ApeKI	GCWGC	2 cut(s)	215, 227
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AsiGI	ACCGGT	1 cut(s)	167
AspS9I	GGNCC	2 cut(s)	50, 323
AsuHPI	GGTGA	2 cut(s)	157, 193
AvaII	GGWCC	2 cut(s)	50, 323
BanII	GRGCYC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	280
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	202, 239
BciT130I	CCWGG	2 cut(s)	321, 327
BcoDI	GTCTC	1 cut(s)	29
BisI	GCNGC	2 cut(s)	216, 228
BlsI	GCNGC	2 cut(s)	217, 229
Bme1390I	CCNGG	2 cut(s)	321, 327
Bme18I	GGWCC	2 cut(s)	50, 323
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	50, 323
BmiI	GGNNCC	1 cut(s)	24
BmrFI	CCNGG	2 cut(s)	321, 327
BmsI	GCATC	4 cut(s)	110, 171, 239, 273
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	2 cut(s)	303, 318
BpuEI	CTTGAG	1 cut(s)	216
BsaAI	YACGTR	1 cut(s)	280
BsaWI	WCCGGW	2 cut(s)	140, 167
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	2 cut(s)	321, 327
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	1 cut(s)	347
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	202, 239
BshTI	ACCGGT	1 cut(s)	167
BsiHKAI	GWGCWC	1 cut(s)	334
BsiSI	CCGG	2 cut(s)	141, 168
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	29
Bsp1286I	GDGCHC	2 cut(s)	334, 352
Bsp143I	GATC	1 cut(s)	133
BspACI	CCGC	1 cut(s)	160
BspCNI	CTCAG	1 cut(s)	346
BspLI	GGNNCC	1 cut(s)	24
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	167
BssMI	GATC	1 cut(s)	133
Bst2UI	CCWGG	2 cut(s)	321, 327
Bst4CI	ACNGT	3 cut(s)	40, 194, 413
Bst6I	CTCTTC	2 cut(s)	2, 430
BstBAI	YACGTR	1 cut(s)	280
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	18, 333, 344
BstF5I	GGATG	1 cut(s)	394
BstKTI	GATC	1 cut(s)	136
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	1 cut(s)	133
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
BstNI	CCWGG	2 cut(s)	321, 327
BstSCI	CCNGG	2 cut(s)	319, 325
BstV1I	GCAGC	2 cut(s)	202, 239
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	1 cut(s)	267
Cac8I	GCNNGC	1 cut(s)	225
CaiI	CAGNNNCTG	1 cut(s)	326
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	50, 323
Csp6I	GTAC	1 cut(s)	414
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	4 cut(s)	125, 175, 274, 367
CviJI	RGCY	6 cut(s)	25, 188, 230, 259, 286, 350
CviKI_1	RGCY	6 cut(s)	25, 188, 230, 259, 286, 350
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	18, 333, 344
DpnI	GATC	1 cut(s)	135
DpnII	GATC	1 cut(s)	133
DriI	GACNNNNNGTC	1 cut(s)	321
Eam1104I	CTCTTC	2 cut(s)	2, 430
Eam1105I	GACNNNNNGTC	1 cut(s)	321
EarI	CTCTTC	2 cut(s)	2, 430
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	50, 323
Eco72I	CACGTG	1 cut(s)	280
EcoO109I	RGGNCCY	1 cut(s)	323
EcoRII	CCWGG	2 cut(s)	319, 325
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	4 cut(s)	128, 178, 277, 370
FaiI	YATR	6 cut(s)	126, 176, 213, 221, 275, 368
FatI	CATG	4 cut(s)	124, 174, 273, 366
Fnu4HI	GCNGC	2 cut(s)	216, 228
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	216, 228
GluI	GCNGC	2 cut(s)	216, 228
GsuI	CTGGAG	2 cut(s)	303, 318
HapII	CCGG	2 cut(s)	141, 168
Hin1II	CATG	4 cut(s)	128, 178, 277, 370
HinfI	GANTC	6 cut(s)	43, 200, 316, 394, 400, 447
HpaII	CCGG	2 cut(s)	141, 168
HphI	GGTGA	2 cut(s)	157, 193
Hpy166II	GTNNAC	3 cut(s)	91, 416, 431
Hpy188I	TCNGA	2 cut(s)	399, 452
Hpy188III	TCNNGA	2 cut(s)	62, 233
Hpy8I	GTNNAC	3 cut(s)	91, 416, 431
HpyAV	CCTTC	4 cut(s)	59, 63, 172, 178
HpyCH4III	ACNGT	3 cut(s)	40, 194, 413
HpyCH4IV	ACGT	1 cut(s)	279
HpyCH4V	TGCA	4 cut(s)	101, 227, 252, 277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
HpyF3I	CTNAG	3 cut(s)	18, 333, 344
HpySE526I	ACGT	1 cut(s)	279
Hsp92II	CATG	4 cut(s)	128, 178, 277, 370
Kzo9I	GATC	1 cut(s)	133
LmnI	GCTCC	3 cut(s)	22, 256, 291
LpnPI	CCDG	8 cut(s)	154, 181, 282, 306, 312, 333, 339, 348
Lsp1109I	GCAGC	2 cut(s)	202, 239
LweI	GCATC	4 cut(s)	110, 171, 239, 273
MaeII	ACGT	1 cut(s)	279
MaeIII	GTNAC	3 cut(s)	40, 127, 391
MalI	GATC	1 cut(s)	135
MboI	GATC	1 cut(s)	133
MboII	GAAGA	4 cut(s)	19, 382, 447, 453
MhlI	GDGCHC	2 cut(s)	334, 352
MlyI	GAGTC	5 cut(s)	37, 209, 310, 388, 441
MnlI	CCTC	4 cut(s)	214, 293, 379, 431
MslI	CAYNNNNRTG	4 cut(s)	125, 179, 272, 278
MspI	CCGG	2 cut(s)	141, 168
MspR9I	CCNGG	2 cut(s)	321, 327
MvaI	CCWGG	2 cut(s)	321, 327
MwoI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
NdeII	GATC	1 cut(s)	133
NlaIII	CATG	4 cut(s)	128, 178, 277, 370
NlaIV	GGNNCC	1 cut(s)	24
NmuCI	GTSAC	3 cut(s)	40, 127, 391
PfeI	GAWTC	1 cut(s)	400
PflMI	CCANNNNNTGG	1 cut(s)	326
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	2 cut(s)	217, 229
PleI	GAGTC	5 cut(s)	37, 208, 310, 388, 441
PmaCI	CACGTG	1 cut(s)	280
PmlI	CACGTG	1 cut(s)	280
PpsI	GAGTC	5 cut(s)	37, 208, 310, 388, 441
Ppu21I	YACGTR	1 cut(s)	280
PpuMI	RGGWCCY	1 cut(s)	323
Psp5II	RGGWCCY	1 cut(s)	323
Psp6I	CCWGG	2 cut(s)	319, 325
PspCI	CACGTG	1 cut(s)	280
PspGI	CCWGG	2 cut(s)	319, 325
PspN4I	GGNNCC	1 cut(s)	24
PspPI	GGNCC	2 cut(s)	50, 323
PspPPI	RGGWCCY	1 cut(s)	323
PstNI	CAGNNNCTG	1 cut(s)	326
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	4 cut(s)	125, 179, 272, 278
SatI	GCNGC	2 cut(s)	216, 228
Sau3AI	GATC	1 cut(s)	133
Sau96I	GGNCC	2 cut(s)	50, 323
SchI	GAGTC	5 cut(s)	37, 209, 310, 388, 441
ScrFI	CCNGG	2 cut(s)	321, 327
SduI	GDGCHC	2 cut(s)	334, 352
SetI	ASST	8 cut(s)	33, 55, 183, 232, 261, 282, 288, 325
SfaNI	GCATC	4 cut(s)	110, 171, 239, 273
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	50, 323
SmiMI	CAYNNNNRTG	4 cut(s)	125, 179, 272, 278
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
SsiI	CCGC	1 cut(s)	160
StyD4I	CCNGG	2 cut(s)	319, 325
TaaI	ACNGT	3 cut(s)	40, 194, 413
TaiI	ACGT	1 cut(s)	282
TaqI	TCGA	1 cut(s)	5
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	400
TscAI	CASTG	1 cut(s)	274
TseFI	GTSAC	3 cut(s)	40, 127, 391
TseI	GCWGC	2 cut(s)	215, 227
Tsp45I	GTSAC	3 cut(s)	40, 127, 391
TspDTI	ATGAA	4 cut(s)	109, 113, 191, 383
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	1 cut(s)	274
Van91I	CCANNNNNTGG	1 cut(s)	326
VpaK11BI	GGWCC	2 cut(s)	50, 323

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.