pycom12g02750

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr12
OG0006061
Physical Location & Seq
Reverse (-)
2480256 .. 2481818
1563 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom12g02750.4

Sequence Viewer

Length: 453 bp
ATGTCGAGGAAGAAGACCAGGGAGCCCAAGGAGGATAATGTTACACTTGGACCTGTTCTCCGTGACGGAGAGCATGCTTTCGGTGTTGCTCATATTTTTGCCTCGTTTAATGATACCTTCATTCATGTGACTGACTTGTCCGGTAGGGAGACTCTTGTTCGCATCACCGGTGGTATGAAGGTGAAAGCTGATAGGGATGAATCATCGCCTTATGCCGCTATGCTTGCCGCTCAGGATGTTTCTCAACGCTGCAAGGAGCTTGGCATTACTGCTCTACATATAAAGCTCCGGGCTACTGGAGGGAACAAGACCAAGGCTCCTGGTCCAGGTGCCCAATCAGCACTCAGAGCCCTTGCTCGTTCTGGCATGAGAATTGGCCGCATTGAGGATGTGACTCCAATTCCCACCGATAGTACTCGTAGAAAGGGTGGTAGAAGGGGAAGAAGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.3

Weight (kDa)

10.7

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 230
AciI CCGC 3 cut(s) 216, 228, 379
AcoI YGGCCR 1 cut(s) 376
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 326, 385
AgeI ACCGGT 1 cut(s) 167
AjnI CCWGG 3 cut(s) 17, 319, 325
AluBI AGCT 3 cut(s) 188, 259, 286
AluI AGCT 3 cut(s) 188, 259, 286
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 1 cut(s) 249
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 50, 323
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 157, 193
AvaII GGWCC 2 cut(s) 50, 323
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 27, 352
BbsI GAAGAC 1 cut(s) 20
BbvI GCAGC 1 cut(s) 236
BciT130I CCWGG 3 cut(s) 19, 321, 327
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 4 cut(s) 216, 228, 250, 379
BlsI GCNGC 4 cut(s) 217, 229, 251, 380
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 4 cut(s) 19, 290, 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 3 cut(s) 24, 318, 331
BmrFI CCNGG 4 cut(s) 19, 290, 321, 327
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 3 cut(s) 18, 27, 312
BsaWI WCCGGW 2 cut(s) 140, 167
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 301, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 385
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 3 cut(s) 19, 321, 327
BseDI CCNNGG 3 cut(s) 18, 27, 312
BseGI GGATG 3 cut(s) 202, 241, 394
BseLI CCNNNNNNNGG 2 cut(s) 326, 385
BseMII CTCAG 2 cut(s) 245, 358
BseNI ACTGG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 1 cut(s) 236
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 167
BsiSI CCGG 3 cut(s) 141, 168, 289
BslI CCNNNNNNNGG 2 cut(s) 326, 385
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 3 cut(s) 27, 334, 352
BspACI CCGC 3 cut(s) 216, 228, 379
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 244, 357
BspLI GGNNCC 3 cut(s) 24, 318, 331
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 3 cut(s) 18, 27, 312
BssT1I CCWWGG 2 cut(s) 27, 312
Bst2UI CCWGG 3 cut(s) 19, 321, 327
BstC8I GCNNGC 2 cut(s) 75, 225
BstDEI CTNAG 2 cut(s) 231, 344
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 202, 241, 394
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 3 cut(s) 19, 321, 327
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 17, 288, 319, 325
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 1 cut(s) 236
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 378
BtgZI GCGATG 1 cut(s) 189
BtsCI GGATG 3 cut(s) 202, 241, 394
Cac8I GCNNGC 2 cut(s) 75, 225
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 50, 323
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 74, 125, 367
CviJI RGCY 8 cut(s) 25, 188, 259, 286, 293, 317, 350, 378
CviKI_1 RGCY 8 cut(s) 25, 188, 259, 286, 293, 317, 350, 378
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 231, 344
DrdI GACNNNNNNGTC 1 cut(s) 136
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 376
Eco130I CCWWGG 2 cut(s) 27, 312
Eco24I GRGCYC 2 cut(s) 27, 352
Eco47I GGWCC 2 cut(s) 50, 323
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 17, 319, 325
EcoT14I CCWWGG 2 cut(s) 27, 312
EcoT38I GRGCYC 2 cut(s) 27, 352
ErhI CCWWGG 2 cut(s) 27, 312
FaeI CATG 3 cut(s) 77, 128, 370
FaiI YATR 9 cut(s) 75, 93, 126, 176, 213, 221, 279, 281, 368
FatI CATG 3 cut(s) 73, 124, 366
Fnu4HI GCNGC 4 cut(s) 216, 228, 250, 379
FokI GGATG 3 cut(s) 209, 248, 401
FriOI GRGCYC 2 cut(s) 27, 352
Fsp4HI GCNGC 4 cut(s) 216, 228, 250, 379
GluI GCNGC 4 cut(s) 216, 228, 250, 379
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 378
HapII CCGG 3 cut(s) 141, 168, 289
Hin1II CATG 3 cut(s) 77, 128, 370
HinfI GANTC 3 cut(s) 151, 200, 394
HpaII CCGG 3 cut(s) 141, 168, 289
HphI GGTGA 2 cut(s) 157, 193
Hpy188I TCNGA 1 cut(s) 347
Hpy188III TCNNGA 1 cut(s) 233
HpyAV CCTTC 4 cut(s) 127, 172, 429, 438
HpyCH4V TGCA 1 cut(s) 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
HpyF3I CTNAG 2 cut(s) 231, 344
Hsp92II CATG 3 cut(s) 77, 128, 370
LmnI GCTCC 4 cut(s) 22, 256, 291, 322
Lsp1109I GCAGC 1 cut(s) 236
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 4 cut(s) 40, 62, 127, 391
MbiI CCGCTC 1 cut(s) 230
MboII GAAGA 3 cut(s) 22, 25, 453
MhlI GDGCHC 3 cut(s) 27, 334, 352
MluCI AATT 2 cut(s) 372, 399
MlyI GAGTC 2 cut(s) 145, 388
MnlI CCTC 4 cut(s) 25, 112, 293, 379
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 3 cut(s) 141, 168, 289
MspR9I CCNGG 4 cut(s) 19, 290, 321, 327
MvaI CCWGG 3 cut(s) 19, 321, 327
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NciI CCSGG 1 cut(s) 290
NlaIII CATG 3 cut(s) 77, 128, 370
NlaIV GGNNCC 3 cut(s) 24, 318, 331
NmuCI GTSAC 3 cut(s) 62, 127, 391
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PfeI GAWTC 1 cut(s) 200
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 4 cut(s) 217, 229, 251, 380
PleI GAGTC 2 cut(s) 145, 388
PpsI GAGTC 2 cut(s) 145, 388
Psp6I CCWGG 3 cut(s) 17, 319, 325
PspGI CCWGG 3 cut(s) 17, 319, 325
PspN4I GGNNCC 3 cut(s) 24, 318, 331
PspPI GGNCC 2 cut(s) 50, 323
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 4 cut(s) 216, 228, 250, 379
Sau96I GGNCC 2 cut(s) 50, 323
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 2 cut(s) 145, 388
ScrFI CCNGG 4 cut(s) 19, 290, 321, 327
SduI GDGCHC 3 cut(s) 27, 334, 352
SetI ASST 8 cut(s) 55, 119, 183, 190, 261, 288, 331, 449
SfaNI GCATC 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 77
Sse9I AATT 2 cut(s) 372, 399
SsiI CCGC 3 cut(s) 216, 228, 379
StyD4I CCNGG 4 cut(s) 17, 288, 319, 325
StyI CCWWGG 2 cut(s) 27, 312
TaqI TCGA 1 cut(s) 5
TasI AATT 2 cut(s) 372, 399
TatI WGTACW 1 cut(s) 413
TauI GCSGC 3 cut(s) 218, 230, 381
TfiI GAWTC 1 cut(s) 200
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 3 cut(s) 62, 127, 391
TseI GCWGC 1 cut(s) 249
Tsp45I GTSAC 3 cut(s) 62, 127, 391
TspDTI ATGAA 4 cut(s) 109, 113, 191, 213
TspGWI ACGGA 2 cut(s) 50, 81
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.