Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

2078631 .. 2080203

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02700.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGAGGAAGAAGACCAGGGAGCCCAAGGAGGATAATGTTACTCTTGGACCTGTTCTCCGTGACGGAGAACATGCTTTCGGTGTTGCTCATATTTTTGCCTCATTTAATGATACCTTCATTCATGTGACTGACTTGTCCGGTAGGGAGACTCTTGTGCGCATCACCGGTGGTATGAAGGTGAAAGCTGATAGGGATGAATCATCGCCTTATGCAGCTATGCTTGCCGCTCAGGATGTTTCTCAACGCTGCAAGGAGCTTGGCATTACTGCTCTACATATAAAGCTCCGGGCTACTGGAGGGAACAAGACCAAGACTCCTGGTCCAGGCGCCCAATCAGCACTCAGAGCCCTTGCTCGTTCTGGCATGAGAATTGGTCGCATTGAGGATGTGACTCCAATTCCCACTGACAGCACTCGTAGAAAGGGTGGCAGAAGGGGAAGAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

151

Amino Acids

16.33

Weight (kDa)

10.7

Isoelectric Point (pI)

53.97

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
Acc16I	TGCGCA	1 cut(s)	161
AccB1I	GGYRCC	1 cut(s)	329
AccBSI	CCGCTC	1 cut(s)	230
AciI	CCGC	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	330
AfiI	CCNNNNNNNGG	1 cut(s)	326
AgeI	ACCGGT	1 cut(s)	167
AhdI	GACNNNNNGTC	1 cut(s)	321
AjnI	CCWGG	3 cut(s)	17, 319, 325
AluBI	AGCT	4 cut(s)	188, 218, 259, 286
AluI	AGCT	4 cut(s)	188, 218, 259, 286
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	2 cut(s)	215, 249
AsiGI	ACCGGT	1 cut(s)	167
AspLEI	GCGC	2 cut(s)	162, 332
AspS9I	GGNCC	2 cut(s)	50, 323
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	2 cut(s)	157, 193
AvaII	GGWCC	2 cut(s)	50, 323
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	27, 352
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	2 cut(s)	227, 236
BciT130I	CCWGG	3 cut(s)	19, 321, 327
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	143
BfoI	RGCGCY	1 cut(s)	333
BisI	GCNGC	3 cut(s)	216, 228, 250
BlsI	GCNGC	3 cut(s)	217, 229, 251
Bme1390I	CCNGG	4 cut(s)	19, 290, 321, 327
Bme18I	GGWCC	2 cut(s)	50, 323
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	50, 323
BmiI	GGNNCC	2 cut(s)	24, 331
BmrFI	CCNGG	4 cut(s)	19, 290, 321, 327
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	290
BsaHI	GRCGYC	1 cut(s)	330
BsaJI	CCNNGG	2 cut(s)	18, 27
BsaWI	WCCGGW	2 cut(s)	140, 167
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse118I	RCCGGY	1 cut(s)	167
Bse1I	ACTGG	1 cut(s)	301
BseBI	CCWGG	3 cut(s)	19, 321, 327
BseDI	CCNNGG	2 cut(s)	18, 27
BseGI	GGATG	3 cut(s)	202, 241, 394
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	245, 358
BseNI	ACTGG	1 cut(s)	301
BseXI	GCAGC	2 cut(s)	227, 236
BshNI	GGYRCC	1 cut(s)	329
BshTI	ACCGGT	1 cut(s)	167
BsiSI	CCGG	3 cut(s)	141, 168, 289
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	2 cut(s)	27, 352
BspACI	CCGC	1 cut(s)	228
BspCNI	CTCAG	2 cut(s)	244, 357
BspLI	GGNNCC	2 cut(s)	24, 331
BspT107I	GGYRCC	1 cut(s)	329
BsrBI	CCGCTC	1 cut(s)	230
BsrFI	RCCGGY	1 cut(s)	167
BsrI	ACTGG	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	167
BssECI	CCNNGG	2 cut(s)	18, 27
BssNI	GRCGYC	1 cut(s)	330
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	3 cut(s)	19, 321, 327
BstACI	GRCGYC	1 cut(s)	330
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	2 cut(s)	231, 344
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	3 cut(s)	202, 241, 394
BstH2I	RGCGCY	1 cut(s)	333
BstHHI	GCGC	2 cut(s)	162, 332
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
BstNI	CCWGG	3 cut(s)	19, 321, 327
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	4 cut(s)	17, 288, 319, 325
BstV1I	GCAGC	2 cut(s)	227, 236
BstV2I	GAAGAC	1 cut(s)	20
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	3 cut(s)	202, 241, 394
BtsIMutI	CAGTG	1 cut(s)	405
Cac8I	GCNNGC	1 cut(s)	225
CfoI	GCGC	2 cut(s)	162, 332
Cfr10I	RCCGGY	1 cut(s)	167
Cfr13I	GGNCC	2 cut(s)	50, 323
CspAI	ACCGGT	1 cut(s)	167
CviAII	CATG	3 cut(s)	74, 125, 367
CviJI	RGCY	7 cut(s)	25, 188, 218, 259, 286, 293, 350
CviKI_1	RGCY	7 cut(s)	25, 188, 218, 259, 286, 293, 350
DdeI	CTNAG	2 cut(s)	231, 344
DinI	GGCGCC	1 cut(s)	331
DrdI	GACNNNNNNGTC	1 cut(s)	136
DriI	GACNNNNNGTC	1 cut(s)	321
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eam1105I	GACNNNNNGTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	27, 352
Eco47I	GGWCC	2 cut(s)	50, 323
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	17, 319, 325
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	27, 352
EgeI	GGCGCC	1 cut(s)	331
EheI	GGCGCC	1 cut(s)	331
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	3 cut(s)	77, 128, 370
FaiI	YATR	9 cut(s)	75, 93, 126, 176, 213, 221, 279, 281, 368
FatI	CATG	3 cut(s)	73, 124, 366
Fnu4HI	GCNGC	3 cut(s)	216, 228, 250
FokI	GGATG	3 cut(s)	209, 248, 401
FriOI	GRGCYC	2 cut(s)	27, 352
Fsp4HI	GCNGC	3 cut(s)	216, 228, 250
FspAI	RTGCGCAY	1 cut(s)	161
FspI	TGCGCA	1 cut(s)	161
GlaI	GCGC	2 cut(s)	161, 331
GluI	GCNGC	3 cut(s)	216, 228, 250
GsuI	CTGGAG	1 cut(s)	318
HaeII	RGCGCY	1 cut(s)	333
HapII	CCGG	3 cut(s)	141, 168, 289
HhaI	GCGC	2 cut(s)	162, 332
Hin1I	GRCGYC	1 cut(s)	330
Hin1II	CATG	3 cut(s)	77, 128, 370
Hin6I	GCGC	2 cut(s)	160, 330
HinP1I	GCGC	2 cut(s)	160, 330
HinfI	GANTC	4 cut(s)	151, 200, 316, 394
HpaII	CCGG	3 cut(s)	141, 168, 289
HphI	GGTGA	2 cut(s)	157, 193
Hpy188I	TCNGA	1 cut(s)	347
Hpy188III	TCNNGA	1 cut(s)	233
HpyAV	CCTTC	4 cut(s)	127, 172, 429, 438
HpyCH4V	TGCA	2 cut(s)	215, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
HpyF3I	CTNAG	2 cut(s)	231, 344
Hsp92I	GRCGYC	1 cut(s)	330
Hsp92II	CATG	3 cut(s)	77, 128, 370
HspAI	GCGC	2 cut(s)	160, 330
KasI	GGCGCC	1 cut(s)	329
LmnI	GCTCC	3 cut(s)	22, 256, 291
Lsp1109I	GCAGC	2 cut(s)	227, 236
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	4 cut(s)	40, 62, 127, 391
MbiI	CCGCTC	1 cut(s)	230
MboII	GAAGA	3 cut(s)	22, 25, 453
MhlI	GDGCHC	2 cut(s)	27, 352
MluCI	AATT	2 cut(s)	372, 399
Mly113I	GGCGCC	1 cut(s)	330
MlyI	GAGTC	3 cut(s)	145, 310, 388
MnlI	CCTC	4 cut(s)	25, 112, 293, 379
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	125
MspI	CCGG	3 cut(s)	141, 168, 289
MspR9I	CCNGG	4 cut(s)	19, 290, 321, 327
MvaI	CCWGG	3 cut(s)	19, 321, 327
MwoI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
NarI	GGCGCC	1 cut(s)	330
NciI	CCSGG	1 cut(s)	290
NlaIII	CATG	3 cut(s)	77, 128, 370
NlaIV	GGNNCC	2 cut(s)	24, 331
NmuCI	GTSAC	3 cut(s)	62, 127, 391
NsbI	TGCGCA	1 cut(s)	161
NspI	RCATGY	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	200
PinAI	ACCGGT	1 cut(s)	167
PkrI	GCNGC	3 cut(s)	217, 229, 251
PleI	GAGTC	3 cut(s)	145, 310, 388
PluTI	GGCGCC	1 cut(s)	333
PpsI	GAGTC	3 cut(s)	145, 310, 388
Psp6I	CCWGG	3 cut(s)	17, 319, 325
PspGI	CCWGG	3 cut(s)	17, 319, 325
PspN4I	GGNNCC	2 cut(s)	24, 331
PspPI	GGNCC	2 cut(s)	50, 323
RseI	CAYNNNNRTG	1 cut(s)	125
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	3 cut(s)	216, 228, 250
Sau96I	GGNCC	2 cut(s)	50, 323
SchI	GAGTC	3 cut(s)	145, 310, 388
ScrFI	CCNGG	4 cut(s)	19, 290, 321, 327
SduI	GDGCHC	2 cut(s)	27, 352
SetI	ASST	8 cut(s)	55, 119, 183, 190, 220, 261, 288, 449
SfaNI	GCATC	1 cut(s)	171
SfoI	GGCGCC	1 cut(s)	331
SgrAI	CRCCGGYG	1 cut(s)	167
SinI	GGWCC	2 cut(s)	50, 323
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	2 cut(s)	372, 399
SsiI	CCGC	1 cut(s)	228
SspDI	GGCGCC	1 cut(s)	329
StyD4I	CCNGG	4 cut(s)	17, 288, 319, 325
StyI	CCWWGG	1 cut(s)	27
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	372, 399
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	412
TseFI	GTSAC	3 cut(s)	62, 127, 391
TseI	GCWGC	2 cut(s)	215, 249
Tsp45I	GTSAC	3 cut(s)	62, 127, 391
TspDTI	ATGAA	4 cut(s)	109, 113, 191, 213
TspGWI	ACGGA	2 cut(s)	50, 81
TspRI	CASTG	1 cut(s)	412
VpaK11BI	GGWCC	2 cut(s)	50, 323
XagI	CCTNNNNNAGG	1 cut(s)	324
XceI	RCATGY	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.