MD12G1028700.v1.1

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr12
OG0006061
Physical Location & Seq
Reverse (-)
3188143 .. 3190188
2046 bp
Loading structure...
UTR
Exon/CDS
Intron
MD12G1028700.v1.1.491

Sequence Viewer

Length: 453 bp
ATGTCGAGGAAGAAGACCAGGGAGCCCAAGGAGGATAATGTTACTCTTGGACCTGTGCTCCGCGACGGAGAGCATGCTTTCGGTGTTGCTCATATTCTTGCCTCGTTTAATGATACCTTCATTCATGTGACTGACTTGTCCGGTAGGGAGACTCTTGTTCGCATCACCGGTGGTATGAAGGTGAAAGCTGATAGGGATGAATCATCTCCTTATGCAGCTATGCTTGCCGCTCAGGATGTTTCTCAACGCTGCAAGGAGCTTGGCATTACTGCTCTACATATAAAGCTCCGGGCTACTGGAGGGAACAAGACCAAGACTCCTGGTCCAGGTGCCCAATCAGCACTCAGAGCCCTTGCTCGTTCTGGCATGAGAATTGGCCGCATTGAGGATGTGACTCCGATTCCCACCGATAGTACTCGAAGAAAGGGTGGTAGAAGGGGAAGAAGGTTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.3

Weight (kDa)

10.7

Isoelectric Point (pI)

55.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Ribosomal_S11 PF00411 28 - 146 8.4e-47 Ribosomal protein S11
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 136
AccB1I GGYRCC 1 cut(s) 329
AccBSI CCGCTC 1 cut(s) 230
AccII CGCG 1 cut(s) 63
AciI CCGC 3 cut(s) 61, 228, 379
AcoI YGGCCR 1 cut(s) 376
AfaI GTAC 1 cut(s) 415
AfiI CCNNNNNNNGG 2 cut(s) 326, 385
AgeI ACCGGT 1 cut(s) 167
AhdI GACNNNNNGTC 1 cut(s) 321
AjnI CCWGG 3 cut(s) 17, 319, 325
AluBI AGCT 4 cut(s) 188, 218, 259, 286
AluI AGCT 4 cut(s) 188, 218, 259, 286
Alw21I GWGCWC 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 143
AoxI GGCC 1 cut(s) 376
ApeKI GCWGC 2 cut(s) 215, 249
AsiGI ACCGGT 1 cut(s) 167
AspS9I GGNCC 2 cut(s) 50, 323
AsuC2I CCSGG 1 cut(s) 290
AsuHPI GGTGA 2 cut(s) 157, 193
AvaII GGWCC 2 cut(s) 50, 323
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 2 cut(s) 27, 352
BbsI GAAGAC 1 cut(s) 20
Bbv12I GWGCWC 1 cut(s) 60
BbvI GCAGC 2 cut(s) 227, 236
BciT130I CCWGG 3 cut(s) 19, 321, 327
BcnI CCSGG 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 143
BisI GCNGC 4 cut(s) 216, 228, 250, 379
BlsI GCNGC 4 cut(s) 217, 229, 251, 380
BmcAI AGTACT 1 cut(s) 415
Bme1390I CCNGG 4 cut(s) 19, 290, 321, 327
Bme18I GGWCC 2 cut(s) 50, 323
BmeRI GACNNNNNGTC 1 cut(s) 321
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 2 cut(s) 24, 331
BmrFI CCNGG 4 cut(s) 19, 290, 321, 327
BmsI GCATC 1 cut(s) 171
BpiI GAAGAC 1 cut(s) 20
BpmI CTGGAG 1 cut(s) 318
Bpu10I CCTNAGC 1 cut(s) 231
BpuMI CCSGG 1 cut(s) 290
BsaJI CCNNGG 2 cut(s) 18, 27
BsaWI WCCGGW 2 cut(s) 140, 167
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 301, 331
Bsc4I CCNNNNNNNGG 2 cut(s) 326, 385
Bse118I RCCGGY 1 cut(s) 167
Bse1I ACTGG 1 cut(s) 301
BseBI CCWGG 3 cut(s) 19, 321, 327
BseDI CCNNGG 2 cut(s) 18, 27
BseGI GGATG 3 cut(s) 202, 241, 394
BseLI CCNNNNNNNGG 2 cut(s) 326, 385
BseMII CTCAG 2 cut(s) 245, 358
BseNI ACTGG 1 cut(s) 301
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 2 cut(s) 227, 236
Bsh1236I CGCG 1 cut(s) 63
BshFI GGCC 1 cut(s) 378
BshNI GGYRCC 1 cut(s) 329
BshTI ACCGGT 1 cut(s) 167
BsiHKAI GWGCWC 1 cut(s) 60
BsiSI CCGG 3 cut(s) 141, 168, 289
BslI CCNNNNNNNGG 2 cut(s) 326, 385
BsmAI GTCTC 1 cut(s) 143
BsnI GGCC 1 cut(s) 378
Bsp1286I GDGCHC 4 cut(s) 27, 60, 334, 352
BspACI CCGC 3 cut(s) 61, 228, 379
BspANI GGCC 1 cut(s) 378
BspCNI CTCAG 2 cut(s) 244, 357
BspFNI CGCG 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 24, 331
BspT107I GGYRCC 1 cut(s) 329
BsrBI CCGCTC 1 cut(s) 230
BsrFI RCCGGY 1 cut(s) 167
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 167
BssECI CCNNGG 2 cut(s) 18, 27
BssT1I CCWWGG 1 cut(s) 27
Bst2UI CCWGG 3 cut(s) 19, 321, 327
BstC8I GCNNGC 2 cut(s) 75, 225
BstDEI CTNAG 2 cut(s) 231, 344
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 3 cut(s) 202, 241, 394
BstFNI CGCG 1 cut(s) 63
BstMAI GTCTC 1 cut(s) 143
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 3 cut(s) 19, 321, 327
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 4 cut(s) 17, 288, 319, 325
BstSLI GKGCMC 1 cut(s) 334
BstUI CGCG 1 cut(s) 63
BstV1I GCAGC 2 cut(s) 227, 236
BstV2I GAAGAC 1 cut(s) 20
BsuRI GGCC 1 cut(s) 378
BtsCI GGATG 3 cut(s) 202, 241, 394
Cac8I GCNNGC 2 cut(s) 75, 225
Cfr10I RCCGGY 1 cut(s) 167
Cfr13I GGNCC 2 cut(s) 50, 323
Csp6I GTAC 1 cut(s) 414
CspAI ACCGGT 1 cut(s) 167
CviAII CATG 3 cut(s) 74, 125, 367
CviJI RGCY 8 cut(s) 25, 188, 218, 259, 286, 293, 350, 378
CviKI_1 RGCY 8 cut(s) 25, 188, 218, 259, 286, 293, 350, 378
CviQI GTAC 1 cut(s) 414
DdeI CTNAG 2 cut(s) 231, 344
DrdI GACNNNNNNGTC 1 cut(s) 136
DriI GACNNNNNGTC 1 cut(s) 321
DseDI GACNNNNNNGTC 1 cut(s) 136
EaeI YGGCCR 1 cut(s) 376
Eam1105I GACNNNNNGTC 1 cut(s) 321
Eco130I CCWWGG 1 cut(s) 27
Eco24I GRGCYC 2 cut(s) 27, 352
Eco47I GGWCC 2 cut(s) 50, 323
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 3 cut(s) 17, 319, 325
EcoT14I CCWWGG 1 cut(s) 27
EcoT38I GRGCYC 2 cut(s) 27, 352
ErhI CCWWGG 1 cut(s) 27
FaeI CATG 3 cut(s) 77, 128, 370
FaiI YATR 9 cut(s) 75, 93, 126, 176, 213, 221, 279, 281, 368
FatI CATG 3 cut(s) 73, 124, 366
Fnu4HI GCNGC 4 cut(s) 216, 228, 250, 379
FokI GGATG 3 cut(s) 209, 248, 401
FriOI GRGCYC 2 cut(s) 27, 352
Fsp4HI GCNGC 4 cut(s) 216, 228, 250, 379
GluI GCNGC 4 cut(s) 216, 228, 250, 379
GsuI CTGGAG 1 cut(s) 318
HaeIII GGCC 1 cut(s) 378
HapII CCGG 3 cut(s) 141, 168, 289
Hin1II CATG 3 cut(s) 77, 128, 370
HinfI GANTC 5 cut(s) 151, 200, 316, 394, 400
HpaII CCGG 3 cut(s) 141, 168, 289
HphI GGTGA 2 cut(s) 157, 193
Hpy188I TCNGA 2 cut(s) 347, 399
Hpy188III TCNNGA 1 cut(s) 233
Hpy99I CGWCG 1 cut(s) 68
HpyAV CCTTC 4 cut(s) 127, 172, 429, 438
HpyCH4V TGCA 2 cut(s) 215, 252
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
HpyF3I CTNAG 2 cut(s) 231, 344
Hsp92II CATG 3 cut(s) 77, 128, 370
LmnI GCTCC 4 cut(s) 22, 63, 256, 291
Lsp1109I GCAGC 2 cut(s) 227, 236
LweI GCATC 1 cut(s) 171
MaeIII GTNAC 3 cut(s) 40, 127, 391
MbiI CCGCTC 1 cut(s) 230
MboII GAAGA 4 cut(s) 22, 25, 432, 453
MhlI GDGCHC 4 cut(s) 27, 60, 334, 352
MluCI AATT 1 cut(s) 372
MlyI GAGTC 3 cut(s) 145, 310, 388
MnlI CCTC 4 cut(s) 25, 112, 293, 379
MseI TTAA 1 cut(s) 108
MslI CAYNNNNRTG 1 cut(s) 125
MspI CCGG 3 cut(s) 141, 168, 289
MspR9I CCNGG 4 cut(s) 19, 290, 321, 327
MvaI CCWGG 3 cut(s) 19, 321, 327
MvnI CGCG 1 cut(s) 63
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NciI CCSGG 1 cut(s) 290
NlaIII CATG 3 cut(s) 77, 128, 370
NlaIV GGNNCC 2 cut(s) 24, 331
NmuCI GTSAC 2 cut(s) 127, 391
NspI RCATGY 1 cut(s) 77
PaeI GCATGC 1 cut(s) 77
PfeI GAWTC 2 cut(s) 200, 400
PinAI ACCGGT 1 cut(s) 167
PkrI GCNGC 4 cut(s) 217, 229, 251, 380
PleI GAGTC 3 cut(s) 145, 310, 388
PpsI GAGTC 3 cut(s) 145, 310, 388
Psp6I CCWGG 3 cut(s) 17, 319, 325
PspGI CCWGG 3 cut(s) 17, 319, 325
PspN4I GGNNCC 2 cut(s) 24, 331
PspPI GGNCC 2 cut(s) 50, 323
RsaI GTAC 1 cut(s) 415
RsaNI GTAC 1 cut(s) 414
RseI CAYNNNNRTG 1 cut(s) 125
SaqAI TTAA 1 cut(s) 108
SatI GCNGC 4 cut(s) 216, 228, 250, 379
Sau96I GGNCC 2 cut(s) 50, 323
ScaI AGTACT 1 cut(s) 415
SchI GAGTC 3 cut(s) 145, 310, 388
ScrFI CCNGG 4 cut(s) 19, 290, 321, 327
SduI GDGCHC 4 cut(s) 27, 60, 334, 352
SetI ASST 9 cut(s) 55, 119, 183, 190, 220, 261, 288, 331, 449
SfaNI GCATC 1 cut(s) 171
SgrAI CRCCGGYG 1 cut(s) 167
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 1 cut(s) 125
SphI GCATGC 1 cut(s) 77
Sse9I AATT 1 cut(s) 372
SsiI CCGC 3 cut(s) 61, 228, 379
StyD4I CCNGG 4 cut(s) 17, 288, 319, 325
StyI CCWWGG 1 cut(s) 27
TaqI TCGA 2 cut(s) 5, 418
TasI AATT 1 cut(s) 372
TatI WGTACW 1 cut(s) 413
TauI GCSGC 2 cut(s) 230, 381
TfiI GAWTC 2 cut(s) 200, 400
Tru1I TTAA 1 cut(s) 108
Tru9I TTAA 1 cut(s) 108
TseFI GTSAC 2 cut(s) 127, 391
TseI GCWGC 2 cut(s) 215, 249
Tsp45I GTSAC 2 cut(s) 127, 391
TspDTI ATGAA 4 cut(s) 109, 113, 191, 213
TspGWI ACGGA 1 cut(s) 81
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 77
ZrmI AGTACT 1 cut(s) 415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.