Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000006

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Forward (+)

29628350 .. 29630476

Gene Structure 2127 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_6G00407080.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGAAGAGGAAGGTCAGAGAGCCCAAGGAGGAGAATGTCACTCTTGGACCTGCTGTCCGTGATGGAGAGCATGTTTTTGGTGTCGCTCACATCTTTGCCTCCTTCAATGATACCTTCATTCATGTGACTGATTTGTCTGGGAGGGAAACTCTTGTTCGCATCACTGGTGGCATGAAGGTCAAGGCTGATAGGGATGAATCATCACCATATGCTGCCATGCTTGCAGCACAGGATGTTTCTACTCGGTGCAAGGAGCTTGGAATTACTGCCTTGCACATAAAGCTTCGGGCTACTGGAGGGAACAAGACCAAGACTCCTGGTCCAGGTGCTCAATCAGCTCTTAGAGCCCTTGCTCGGTCTGGGATGAGAATTGGTCGGATTGAGGATGTTACTCCAATTCCCACCGACAGTACTCGCCGAAAGGGTGGCAGAAGGGGTAGAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

150

Amino Acids

16.31

Weight (kDa)

10.7

Isoelectric Point (pI)

52.62

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	28 - 146	9.2e-47	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
Acc36I	ACCTGC	1 cut(s)	61
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	326, 357
AgsI	TTSAA	1 cut(s)	109
AhdI	GACNNNNNGTC	2 cut(s)	56, 321
AjnI	CCWGG	2 cut(s)	319, 325
AluBI	AGCT	3 cut(s)	259, 286, 341
AluI	AGCT	3 cut(s)	259, 286, 341
Alw21I	GWGCWC	1 cut(s)	334
ApeKI	GCWGC	2 cut(s)	215, 227
AspS9I	GGNCC	2 cut(s)	50, 323
AsuHPI	GGTGA	1 cut(s)	198
AvaII	GGWCC	2 cut(s)	50, 323
BanII	GRGCYC	2 cut(s)	27, 352
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	202, 239
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	2 cut(s)	321, 327
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	216, 228
BlsI	GCNGC	2 cut(s)	217, 229
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	2 cut(s)	321, 327
Bme18I	GGWCC	2 cut(s)	50, 323
BmeRI	GACNNNNNGTC	2 cut(s)	56, 321
BmgT120I	GGNCC	2 cut(s)	50, 323
BmrFI	CCNGG	2 cut(s)	321, 327
BmsI	GCATC	1 cut(s)	171
BplI	GAGNNNNNCTC	2 cut(s)	136, 168
BpmI	CTGGAG	1 cut(s)	318
BsaJI	CCNNGG	1 cut(s)	27
BsaXI	ACNNNNNCTCC	4 cut(s)	60, 90, 301, 331
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 357
Bse1I	ACTGG	2 cut(s)	172, 301
BseBI	CCWGG	2 cut(s)	321, 327
BseDI	CCNNGG	1 cut(s)	27
BseGI	GGATG	4 cut(s)	202, 241, 372, 394
BseLI	CCNNNNNNNGG	2 cut(s)	326, 357
BseNI	ACTGG	2 cut(s)	172, 301
BseRI	GAGGAG	1 cut(s)	47
BseXI	GCAGC	2 cut(s)	202, 239
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	326, 357
Bsp1286I	GDGCHC	3 cut(s)	27, 334, 352
BspMI	ACCTGC	1 cut(s)	61
BsrI	ACTGG	2 cut(s)	172, 301
BssECI	CCNNGG	1 cut(s)	27
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	2 cut(s)	321, 327
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	1 cut(s)	2
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	1 cut(s)	344
BstENI	CCTNNNNNAGG	1 cut(s)	324
BstF5I	GGATG	4 cut(s)	202, 241, 372, 394
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
BstNI	CCWGG	2 cut(s)	321, 327
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	2 cut(s)	319, 325
BstV1I	GCAGC	2 cut(s)	202, 239
BtsCI	GGATG	4 cut(s)	202, 241, 372, 394
BtsIMutI	CAGTG	1 cut(s)	165
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	50, 323
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	4 cut(s)	74, 125, 175, 220
CviJI	RGCY	7 cut(s)	25, 188, 259, 286, 293, 341, 350
CviKI_1	RGCY	7 cut(s)	25, 188, 259, 286, 293, 341, 350
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	1 cut(s)	344
DrdI	GACNNNNNNGTC	1 cut(s)	136
DriI	GACNNNNNGTC	2 cut(s)	56, 321
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	1 cut(s)	2
Eam1105I	GACNNNNNGTC	2 cut(s)	56, 321
EarI	CTCTTC	1 cut(s)	2
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	27, 352
Eco47I	GGWCC	2 cut(s)	50, 323
EcoNI	CCTNNNNNAGG	1 cut(s)	324
EcoRII	CCWGG	2 cut(s)	319, 325
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	27, 352
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	77, 128, 178, 223
FaiI	YATR	7 cut(s)	75, 126, 176, 211, 213, 221, 281
FatI	CATG	4 cut(s)	73, 124, 174, 219
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	216, 228
FokI	GGATG	4 cut(s)	209, 248, 379, 401
FriOI	GRGCYC	2 cut(s)	27, 352
Fsp4HI	GCNGC	2 cut(s)	216, 228
GluI	GCNGC	2 cut(s)	216, 228
GsuI	CTGGAG	1 cut(s)	318
Hin1II	CATG	4 cut(s)	77, 128, 178, 223
HindIII	AAGCTT	1 cut(s)	284
HinfI	GANTC	2 cut(s)	200, 316
HphI	GGTGA	1 cut(s)	198
Hpy188I	TCNGA	2 cut(s)	20, 381
HpyAV	CCTTC	6 cut(s)	7, 115, 127, 172, 429, 438
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4V	TGCA	3 cut(s)	227, 252, 277
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
HpyF3I	CTNAG	1 cut(s)	344
Hsp92II	CATG	4 cut(s)	77, 128, 178, 223
LmnI	GCTCC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	202, 239
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	40, 127, 391
MboII	GAAGA	1 cut(s)	19
MhlI	GDGCHC	3 cut(s)	27, 334, 352
MluCI	AATT	3 cut(s)	264, 372, 399
MlyI	GAGTC	1 cut(s)	310
MmeI	TCCRAC	1 cut(s)	359
MnlI	CCTC	6 cut(s)	3, 25, 112, 138, 293, 379
MslI	CAYNNNNRTG	1 cut(s)	125
MspR9I	CCNGG	2 cut(s)	321, 327
MvaI	CCWGG	2 cut(s)	321, 327
MwoI	GCNNNNNNNGC	4 cut(s)	224, 283, 338, 347
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	4 cut(s)	77, 128, 178, 223
NmuCI	GTSAC	2 cut(s)	40, 127
NspI	RCATGY	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	217, 229
PleI	GAGTC	1 cut(s)	310
PpsI	GAGTC	1 cut(s)	310
Psp6I	CCWGG	2 cut(s)	319, 325
PspGI	CCWGG	2 cut(s)	319, 325
PspPI	GGNCC	2 cut(s)	50, 323
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	1 cut(s)	125
SatI	GCNGC	2 cut(s)	216, 228
Sau96I	GGNCC	2 cut(s)	50, 323
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	1 cut(s)	310
ScrFI	CCNGG	2 cut(s)	321, 327
SduI	GDGCHC	3 cut(s)	27, 334, 352
SetI	ASST	9 cut(s)	18, 55, 119, 183, 261, 288, 331, 343, 449
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	2 cut(s)	50, 323
SmiMI	CAYNNNNRTG	1 cut(s)	125
Sse9I	AATT	3 cut(s)	264, 372, 399
StyD4I	CCNGG	2 cut(s)	319, 325
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	5
TaqII	GACCGA	1 cut(s)	348
TasI	AATT	3 cut(s)	264, 372, 399
TatI	WGTACW	1 cut(s)	413
TfiI	GAWTC	1 cut(s)	200
TscAI	CASTG	1 cut(s)	172
TseFI	GTSAC	2 cut(s)	40, 127
TseI	GCWGC	2 cut(s)	215, 227
Tsp45I	GTSAC	2 cut(s)	40, 127
TspDTI	ATGAA	4 cut(s)	109, 113, 191, 213
TspGWI	ACGGA	1 cut(s)	50
TspRI	CASTG	1 cut(s)	172
VpaK11BI	GGWCC	2 cut(s)	50, 323
XagI	CCTNNNNNAGG	1 cut(s)	324
XceI	RCATGY	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.