Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr7

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

10490839 .. 10492908

Gene Structure 2070 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000032053

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGGAGCTGGTTCTTTGGTTTGATTTGGTTTTTGAATCTGTTTTACAGTCGAAGCATAAGAAGACTAGGGAGCCAAAGGAAGAGAATGTTACTCTTGGTCCTGCTGTTAGAGATGGAGAACATGTTTTTGGTGTTGCCCACATTTTCGCCTCATTTAATGACACATTCATTCATGTGACTGATCTCTCTGGAAGGGAAACTTTGGTCCGTATCACTGGTGGTATGAAGGTGAAAGCCGACAGGGATGAGTCTTCCCCATATGCAGCTATGCTTGCAGCACAGGATGTTTCTACAAGATGCAAGGAATTGGGTATTACTGCTCTTCATATTAAGCTGCGGGCAACTGGTGGCAACAAAACCAAGACACCTGGCCCTGGTGCCCAGTCTGCACTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGAATAGAGGATGTGACTCCAATTCCTACCGATAGCACCCGTAGAAAGGGTGGCAGAAGAGGTAGAAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

167

Amino Acids

18.24

Weight (kDa)

10.12

Isoelectric Point (pI)

53.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	44 - 162	1.3e-46	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	377
AciI	CCGC	1 cut(s)	337
AdeI	CACNNNGTG	1 cut(s)	395
AfiI	CCNNNNNNNGG	2 cut(s)	374, 472
AflIII	ACRYGT	1 cut(s)	121
AgsI	TTSAA	1 cut(s)	35
AjnI	CCWGG	2 cut(s)	367, 373
AjuI	GAANNNNNNNTTGG	2 cut(s)	111, 143
AluBI	AGCT	3 cut(s)	7, 266, 334
AluI	AGCT	3 cut(s)	7, 266, 334
Alw21I	GWGCWC	1 cut(s)	400
AoxI	GGCC	1 cut(s)	370
ApeKI	GCWGC	3 cut(s)	263, 275, 334
AspS9I	GGNCC	3 cut(s)	98, 205, 371
AsuHPI	GGTGA	1 cut(s)	241
AvaII	GGWCC	2 cut(s)	98, 205
BaeGI	GKGCMC	1 cut(s)	382
BanI	GGYRCC	1 cut(s)	377
BbsI	GAAGAC	2 cut(s)	68, 243
Bbv12I	GWGCWC	1 cut(s)	400
BbvI	GCAGC	3 cut(s)	275, 287, 321
BccI	CCATC	1 cut(s)	107
BciT130I	CCWGG	2 cut(s)	369, 375
BfaI	CTAG	1 cut(s)	66
BisI	GCNGC	3 cut(s)	264, 276, 335
BlsI	GCNGC	3 cut(s)	265, 277, 336
Bme1390I	CCNGG	2 cut(s)	369, 375
Bme18I	GGWCC	2 cut(s)	98, 205
BmgT120I	GGNCC	3 cut(s)	98, 205, 371
BmiI	GGNNCC	2 cut(s)	72, 379
BmrFI	CCNGG	2 cut(s)	369, 375
BmrI	ACTGGG	1 cut(s)	376
BmsI	GCATC	1 cut(s)	287
BmuI	ACTGGG	1 cut(s)	376
BpiI	GAAGAC	2 cut(s)	68, 243
BsaJI	CCNNGG	1 cut(s)	373
BsaXI	ACNNNNNCTCC	2 cut(s)	108, 138
Bsc4I	CCNNNNNNNGG	2 cut(s)	374, 472
Bse1I	ACTGG	3 cut(s)	220, 349, 382
BseBI	CCWGG	2 cut(s)	369, 375
BseDI	CCNNGG	1 cut(s)	373
BseGI	GGATG	3 cut(s)	250, 289, 442
BseLI	CCNNNNNNNGG	2 cut(s)	374, 472
BseNI	ACTGG	3 cut(s)	220, 349, 382
BseSI	GKGCMC	1 cut(s)	382
BseXI	GCAGC	3 cut(s)	275, 287, 321
BsgI	GTGCAG	1 cut(s)	372
BshFI	GGCC	1 cut(s)	372
BshNI	GGYRCC	1 cut(s)	377
BsiHKAI	GWGCWC	1 cut(s)	400
BslI	CCNNNNNNNGG	2 cut(s)	374, 472
BsnI	GGCC	1 cut(s)	372
Bsp1286I	GDGCHC	2 cut(s)	382, 400
Bsp143I	GATC	1 cut(s)	181
BspACI	CCGC	1 cut(s)	337
BspANI	GGCC	1 cut(s)	372
BspLI	GGNNCC	2 cut(s)	72, 379
BspQI	GCTCTTC	1 cut(s)	327
BspT107I	GGYRCC	1 cut(s)	377
BsrI	ACTGG	3 cut(s)	220, 349, 382
BssECI	CCNNGG	1 cut(s)	373
BssMI	GATC	1 cut(s)	181
Bst2UI	CCWGG	2 cut(s)	369, 375
Bst4CI	ACNGT	1 cut(s)	48
Bst6I	CTCTTC	3 cut(s)	75, 327, 478
BstAPI	GCANNNNNTGC	1 cut(s)	395
BstC8I	GCNNGC	2 cut(s)	273, 339
BstF5I	GGATG	3 cut(s)	250, 289, 442
BstKTI	GATC	1 cut(s)	184
BstMBI	GATC	1 cut(s)	181
BstMWI	GCNNNNNNNGC	3 cut(s)	272, 386, 395
BstNI	CCWGG	2 cut(s)	369, 375
BstNSI	RCATGY	1 cut(s)	125
BstSCI	CCNGG	2 cut(s)	367, 373
BstSLI	GKGCMC	1 cut(s)	382
BstV1I	GCAGC	3 cut(s)	275, 287, 321
BstV2I	GAAGAC	2 cut(s)	68, 243
BsuRI	GGCC	1 cut(s)	372
BtsCI	GGATG	3 cut(s)	250, 289, 442
BtsIMutI	CAGTG	1 cut(s)	213
Cac8I	GCNNGC	2 cut(s)	273, 339
Cfr13I	GGNCC	3 cut(s)	98, 205, 371
CviAII	CATG	2 cut(s)	122, 173
CviJI	RGCY	7 cut(s)	7, 73, 236, 266, 334, 372, 496
CviKI_1	RGCY	7 cut(s)	7, 73, 236, 266, 334, 372, 496
DpnI	GATC	1 cut(s)	183
DpnII	GATC	1 cut(s)	181
DraIII	CACNNNGTG	1 cut(s)	395
Eam1104I	CTCTTC	3 cut(s)	75, 327, 478
EarI	CTCTTC	3 cut(s)	75, 327, 478
Eco47I	GGWCC	2 cut(s)	98, 205
EcoRII	CCWGG	2 cut(s)	367, 373
FaeI	CATG	2 cut(s)	125, 176
FaiI	YATR	8 cut(s)	57, 123, 174, 224, 259, 261, 269, 327
FalI	AAGNNNNNCTT	2 cut(s)	184, 216
FatI	CATG	2 cut(s)	121, 172
FauI	CCCGC	1 cut(s)	330
FauNDI	CATATG	1 cut(s)	259
Fnu4HI	GCNGC	3 cut(s)	264, 276, 335
FokI	GGATG	3 cut(s)	257, 296, 449
Fsp4HI	GCNGC	3 cut(s)	264, 276, 335
FspBI	CTAG	1 cut(s)	66
GluI	GCNGC	3 cut(s)	264, 276, 335
HaeIII	GGCC	1 cut(s)	372
Hin1II	CATG	2 cut(s)	125, 176
HinfI	GANTC	3 cut(s)	35, 248, 442
HphI	GGTGA	1 cut(s)	241
Hpy188I	TCNGA	1 cut(s)	500
Hpy188III	TCNNGA	2 cut(s)	189, 411
HpyAV	CCTTC	3 cut(s)	186, 220, 486
HpyCH4III	ACNGT	1 cut(s)	48
HpyCH4V	TGCA	4 cut(s)	263, 275, 300, 389
HpyF10VI	GCNNNNNNNGC	3 cut(s)	272, 386, 395
Hsp92II	CATG	2 cut(s)	125, 176
Kzo9I	GATC	1 cut(s)	181
LguI	GCTCTTC	1 cut(s)	327
LmnI	GCTCC	2 cut(s)	4, 70
Lsp1109I	GCAGC	3 cut(s)	275, 287, 321
LweI	GCATC	1 cut(s)	287
MaeI	CTAG	1 cut(s)	66
MaeIII	GTNAC	3 cut(s)	88, 175, 439
MalI	GATC	1 cut(s)	183
MboI	GATC	1 cut(s)	181
MboII	GAAGA	5 cut(s)	73, 92, 243, 314, 495
MhlI	GDGCHC	2 cut(s)	382, 400
MluCI	AATT	3 cut(s)	305, 420, 447
MlyI	GAGTC	2 cut(s)	257, 436
MnlI	CCTC	3 cut(s)	160, 427, 479
MseI	TTAA	2 cut(s)	156, 330
MslI	CAYNNNNRTG	1 cut(s)	173
MspR9I	CCNGG	2 cut(s)	369, 375
MvaI	CCWGG	2 cut(s)	369, 375
MwoI	GCNNNNNNNGC	3 cut(s)	272, 386, 395
NdeI	CATATG	1 cut(s)	259
NdeII	GATC	1 cut(s)	181
NlaIII	CATG	2 cut(s)	125, 176
NlaIV	GGNNCC	2 cut(s)	72, 379
NmuCI	GTSAC	2 cut(s)	175, 439
NspI	RCATGY	1 cut(s)	125
PciI	ACATGT	1 cut(s)	121
PciSI	GCTCTTC	1 cut(s)	327
PfeI	GAWTC	1 cut(s)	35
PkrI	GCNGC	3 cut(s)	265, 277, 336
PleI	GAGTC	2 cut(s)	256, 436
PpsI	GAGTC	2 cut(s)	256, 436
PscI	ACATGT	1 cut(s)	121
Psp6I	CCWGG	2 cut(s)	367, 373
PspGI	CCWGG	2 cut(s)	367, 373
PspN4I	GGNNCC	2 cut(s)	72, 379
PspPI	GGNCC	3 cut(s)	98, 205, 371
RseI	CAYNNNNRTG	1 cut(s)	173
SapI	GCTCTTC	1 cut(s)	327
SaqAI	TTAA	2 cut(s)	156, 330
SatI	GCNGC	3 cut(s)	264, 276, 335
Sau3AI	GATC	1 cut(s)	181
Sau96I	GGNCC	3 cut(s)	98, 205, 371
SchI	GAGTC	2 cut(s)	257, 436
ScrFI	CCNGG	2 cut(s)	369, 375
SduI	GDGCHC	2 cut(s)	382, 400
SetI	ASST	6 cut(s)	9, 231, 268, 336, 370, 490
SfaNI	GCATC	1 cut(s)	287
SinI	GGWCC	2 cut(s)	98, 205
SmiMI	CAYNNNNRTG	1 cut(s)	173
Sse9I	AATT	3 cut(s)	305, 420, 447
SsiI	CCGC	1 cut(s)	337
SspMI	CTAG	1 cut(s)	66
StyD4I	CCNGG	2 cut(s)	367, 373
TaaI	ACNGT	1 cut(s)	48
TaqI	TCGA	2 cut(s)	50, 427
TasI	AATT	3 cut(s)	305, 420, 447
TfiI	GAWTC	1 cut(s)	35
Tru1I	TTAA	2 cut(s)	156, 330
Tru9I	TTAA	2 cut(s)	156, 330
TscAI	CASTG	1 cut(s)	220
TseFI	GTSAC	2 cut(s)	175, 439
TseI	GCWGC	3 cut(s)	263, 275, 334
Tsp45I	GTSAC	2 cut(s)	175, 439
TspDTI	ATGAA	4 cut(s)	157, 161, 239, 314
TspGWI	ACGGA	2 cut(s)	197, 383
TspRI	CASTG	1 cut(s)	220
VpaK11BI	GGWCC	2 cut(s)	98, 205
XceI	RCATGY	1 cut(s)	125
XspI	CTAG	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.