Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003598.1

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

55344 .. 57149

Gene Structure 1806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003598.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

atgtcgaagcataagaagactagggagccaaaggaagagaatgttactcttggtcctgctgttagagatggagaacatgtttttggtgttgcccacattttcgcctcatttaatgacacattcattcatgtgactgatctctctggaagggaaactttggtccgtatcactggtggtatgaaggtgaaagccgacagggatgagtcttccccatatgcagctatgcttgcagcacaggatgtttctacaagatgcaaggaattgggtattactgctcttcatattaagctgcgggcaactggtggcaacaaaactaagacacctggccctggtgcccagtctgcactccgtgctcttgctcgttctggaatgagaattggtcgtatagaggatgtgactccaattcctaccgatagcacccgtagaaagggtggcagaagaggaagaaggctctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0043043 GO:0043170 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

151

Amino Acids

16.42

Weight (kDa)

10.56

Isoelectric Point (pI)

52.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	332
AciI	CCGC	1 cut(s)	292
AdeI	CACNNNGTG	1 cut(s)	350
AfiI	CCNNNNNNNGG	2 cut(s)	329, 427
AflIII	ACRYGT	1 cut(s)	76
AjnI	CCWGG	2 cut(s)	322, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	2 cut(s)	221, 289
AluI	AGCT	2 cut(s)	221, 289
Alw21I	GWGCWC	1 cut(s)	355
AoxI	GGCC	1 cut(s)	325
ApeKI	GCWGC	3 cut(s)	218, 230, 289
AspS9I	GGNCC	3 cut(s)	53, 160, 326
AsuHPI	GGTGA	1 cut(s)	196
AvaII	GGWCC	2 cut(s)	53, 160
BaeGI	GKGCMC	1 cut(s)	337
BanI	GGYRCC	1 cut(s)	332
BbsI	GAAGAC	2 cut(s)	23, 198
Bbv12I	GWGCWC	1 cut(s)	355
BbvI	GCAGC	3 cut(s)	230, 242, 276
BccI	CCATC	1 cut(s)	62
BciT130I	CCWGG	2 cut(s)	324, 330
BfaI	CTAG	1 cut(s)	21
BisI	GCNGC	3 cut(s)	219, 231, 290
BlsI	GCNGC	3 cut(s)	220, 232, 291
Bme1390I	CCNGG	2 cut(s)	324, 330
Bme18I	GGWCC	2 cut(s)	53, 160
BmgT120I	GGNCC	3 cut(s)	53, 160, 326
BmiI	GGNNCC	2 cut(s)	27, 334
BmrFI	CCNGG	2 cut(s)	324, 330
BmrI	ACTGGG	1 cut(s)	331
BmsI	GCATC	1 cut(s)	242
BmuI	ACTGGG	1 cut(s)	331
BpiI	GAAGAC	2 cut(s)	23, 198
BsaJI	CCNNGG	1 cut(s)	328
BsaXI	ACNNNNNCTCC	2 cut(s)	63, 93
Bsc4I	CCNNNNNNNGG	2 cut(s)	329, 427
Bse1I	ACTGG	3 cut(s)	175, 304, 337
BseBI	CCWGG	2 cut(s)	324, 330
BseDI	CCNNGG	1 cut(s)	328
BseGI	GGATG	3 cut(s)	205, 244, 397
BseLI	CCNNNNNNNGG	2 cut(s)	329, 427
BseNI	ACTGG	3 cut(s)	175, 304, 337
BseSI	GKGCMC	1 cut(s)	337
BseXI	GCAGC	3 cut(s)	230, 242, 276
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	1 cut(s)	327
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	355
BslI	CCNNNNNNNGG	2 cut(s)	329, 427
BsnI	GGCC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	337, 355
Bsp143I	GATC	1 cut(s)	136
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	27, 334
BspQI	GCTCTTC	1 cut(s)	282
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	3 cut(s)	175, 304, 337
BssECI	CCNNGG	1 cut(s)	328
BssMI	GATC	1 cut(s)	136
Bst2UI	CCWGG	2 cut(s)	324, 330
Bst6I	CTCTTC	3 cut(s)	30, 282, 433
BstAPI	GCANNNNNTGC	1 cut(s)	350
BstC8I	GCNNGC	2 cut(s)	228, 294
BstDEI	CTNAG	1 cut(s)	315
BstF5I	GGATG	3 cut(s)	205, 244, 397
BstKTI	GATC	1 cut(s)	139
BstMBI	GATC	1 cut(s)	136
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
BstNI	CCWGG	2 cut(s)	324, 330
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	2 cut(s)	322, 328
BstSLI	GKGCMC	1 cut(s)	337
BstV1I	GCAGC	3 cut(s)	230, 242, 276
BstV2I	GAAGAC	2 cut(s)	23, 198
BsuRI	GGCC	1 cut(s)	327
BtsCI	GGATG	3 cut(s)	205, 244, 397
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	228, 294
Cfr13I	GGNCC	3 cut(s)	53, 160, 326
CviAII	CATG	2 cut(s)	77, 128
CviJI	RGCY	6 cut(s)	28, 191, 221, 289, 327, 451
CviKI_1	RGCY	6 cut(s)	28, 191, 221, 289, 327, 451
DdeI	CTNAG	1 cut(s)	315
DpnI	GATC	1 cut(s)	138
DpnII	GATC	1 cut(s)	136
DraIII	CACNNNGTG	1 cut(s)	350
Eam1104I	CTCTTC	3 cut(s)	30, 282, 433
EarI	CTCTTC	3 cut(s)	30, 282, 433
Eco47I	GGWCC	2 cut(s)	53, 160
EcoRII	CCWGG	2 cut(s)	322, 328
FaeI	CATG	2 cut(s)	80, 131
FaiI	YATR	9 cut(s)	12, 78, 129, 179, 214, 216, 224, 282, 386
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	2 cut(s)	76, 127
FauI	CCCGC	1 cut(s)	285
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	3 cut(s)	219, 231, 290
FokI	GGATG	3 cut(s)	212, 251, 404
Fsp4HI	GCNGC	3 cut(s)	219, 231, 290
FspBI	CTAG	1 cut(s)	21
GluI	GCNGC	3 cut(s)	219, 231, 290
HaeIII	GGCC	1 cut(s)	327
Hin1II	CATG	2 cut(s)	80, 131
HinfI	GANTC	2 cut(s)	203, 397
HphI	GGTGA	1 cut(s)	196
Hpy188I	TCNGA	1 cut(s)	455
Hpy188III	TCNNGA	2 cut(s)	144, 366
HpyAV	CCTTC	3 cut(s)	141, 175, 441
HpyCH4V	TGCA	4 cut(s)	218, 230, 255, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
HpyF3I	CTNAG	1 cut(s)	315
Hsp92II	CATG	2 cut(s)	80, 131
Kzo9I	GATC	1 cut(s)	136
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	25
Lsp1109I	GCAGC	3 cut(s)	230, 242, 276
LweI	GCATC	1 cut(s)	242
MaeI	CTAG	1 cut(s)	21
MaeIII	GTNAC	3 cut(s)	43, 130, 394
MalI	GATC	1 cut(s)	138
MboI	GATC	1 cut(s)	136
MboII	GAAGA	6 cut(s)	28, 47, 198, 269, 450, 456
MhlI	GDGCHC	2 cut(s)	337, 355
MluCI	AATT	3 cut(s)	260, 375, 402
MlyI	GAGTC	2 cut(s)	212, 391
MnlI	CCTC	3 cut(s)	115, 382, 434
MseI	TTAA	2 cut(s)	111, 285
MslI	CAYNNNNRTG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	324, 330
MvaI	CCWGG	2 cut(s)	324, 330
MwoI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
NdeI	CATATG	1 cut(s)	214
NdeII	GATC	1 cut(s)	136
NlaIII	CATG	2 cut(s)	80, 131
NlaIV	GGNNCC	2 cut(s)	27, 334
NmuCI	GTSAC	2 cut(s)	130, 394
NspI	RCATGY	1 cut(s)	80
PciI	ACATGT	1 cut(s)	76
PciSI	GCTCTTC	1 cut(s)	282
PkrI	GCNGC	3 cut(s)	220, 232, 291
PleI	GAGTC	2 cut(s)	211, 391
PpsI	GAGTC	2 cut(s)	211, 391
PscI	ACATGT	1 cut(s)	76
Psp6I	CCWGG	2 cut(s)	322, 328
PspGI	CCWGG	2 cut(s)	322, 328
PspN4I	GGNNCC	2 cut(s)	27, 334
PspPI	GGNCC	3 cut(s)	53, 160, 326
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	111, 285
SatI	GCNGC	3 cut(s)	219, 231, 290
Sau3AI	GATC	1 cut(s)	136
Sau96I	GGNCC	3 cut(s)	53, 160, 326
SchI	GAGTC	2 cut(s)	212, 391
ScrFI	CCNGG	2 cut(s)	324, 330
SduI	GDGCHC	2 cut(s)	337, 355
SetI	ASST	4 cut(s)	186, 223, 291, 325
SfaNI	GCATC	1 cut(s)	242
SinI	GGWCC	2 cut(s)	53, 160
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	3 cut(s)	260, 375, 402
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	1 cut(s)	21
StyD4I	CCNGG	2 cut(s)	322, 328
TaqI	TCGA	1 cut(s)	5
TasI	AATT	3 cut(s)	260, 375, 402
Tru1I	TTAA	2 cut(s)	111, 285
Tru9I	TTAA	2 cut(s)	111, 285
TscAI	CASTG	1 cut(s)	175
TseFI	GTSAC	2 cut(s)	130, 394
TseI	GCWGC	3 cut(s)	218, 230, 289
Tsp45I	GTSAC	2 cut(s)	130, 394
TspDTI	ATGAA	4 cut(s)	112, 116, 194, 269
TspGWI	ACGGA	2 cut(s)	152, 338
TspRI	CASTG	1 cut(s)	175
VpaK11BI	GGWCC	2 cut(s)	53, 160
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	21

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.