Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Forward (+)

27717703 .. 27719652

Gene Structure 1950 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g26420.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGATACTAATCAAGTCGAAGAAGAAGGTTAGGGAGCCAAAGGAAGACAATGTTACCCTTGGTCCCATTCTCAAGGATGGAGAACATGCCTTTGGTGTTGCACACATTTATGCGTCATTCAATGACACGTTCATTCACGTAACTGATCTGTCAGGAAGGGAAACCCTTGTGCGTATCACTGGTGGTATGAAGGTTAAGGCTGACAGGGATGAGTCTTCCCCATATGCTGCTATGCTTGCAGCACAAGATGTTGCACAGAGATGCAAGGAATTGGGCATTACTGCACTTCATATTAAGCTTCGTGCTACTGGCGGCAATAAAACTAAAACACCTGGTCCAGGTGCTCAGTCTGCCCTCCGTGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATACCTACTGATAGCACCCGTAGAAAGGGTGGAAGGAGAGGAAGGAGGCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00550 ko01100 ko01502 ko03010 map00550 map01100 map01502 map03010

Pfam Domains

Protein Families

Glycos_transf_4 Ribosomal_S11

Protein Analysis

155

Amino Acids

16.76

Weight (kDa)

10.39

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	312
AfiI	CCNNNNNNNGG	2 cut(s)	338, 436
AflIII	ACRYGT	1 cut(s)	126
AgsI	TTSAA	1 cut(s)	121
AjnI	CCWGG	2 cut(s)	331, 337
AjuI	GAANNNNNNNTTGG	2 cut(s)	75, 107
AluBI	AGCT	1 cut(s)	298
AluI	AGCT	1 cut(s)	298
Alw21I	GWGCWC	2 cut(s)	346, 364
ApeKI	GCWGC	2 cut(s)	227, 239
AspS9I	GGNCC	2 cut(s)	62, 335
AvaII	GGWCC	2 cut(s)	62, 335
BbsI	GAAGAC	2 cut(s)	51, 207
Bbv12I	GWGCWC	2 cut(s)	346, 364
BbvI	GCAGC	2 cut(s)	214, 251
BccI	CCATC	1 cut(s)	71
BciT130I	CCWGG	2 cut(s)	333, 339
BisI	GCNGC	3 cut(s)	228, 240, 313
BlsI	GCNGC	3 cut(s)	229, 241, 314
Bme1390I	CCNGG	2 cut(s)	333, 339
Bme18I	GGWCC	2 cut(s)	62, 335
BmgT120I	GGNCC	2 cut(s)	62, 335
BmiI	GGNNCC	2 cut(s)	36, 64
BmrFI	CCNGG	2 cut(s)	333, 339
BmsI	GCATC	1 cut(s)	251
BpiI	GAAGAC	2 cut(s)	51, 207
BpuEI	CTTGAG	1 cut(s)	56
BsaAI	YACGTR	1 cut(s)	139
BsaBI	GATNNNNATC	1 cut(s)	8
BsaJI	CCNNGG	1 cut(s)	58
Bsc4I	CCNNNNNNNGG	2 cut(s)	338, 436
Bse1I	ACTGG	2 cut(s)	184, 313
Bse8I	GATNNNNATC	1 cut(s)	8
BseBI	CCWGG	2 cut(s)	333, 339
BseDI	CCNNGG	1 cut(s)	58
BseGI	GGATG	3 cut(s)	82, 214, 406
BseJI	GATNNNNATC	1 cut(s)	8
BseLI	CCNNNNNNNGG	2 cut(s)	338, 436
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	2 cut(s)	184, 313
BseXI	GCAGC	2 cut(s)	214, 251
BsgI	GTGCAG	1 cut(s)	267
BsiHKAI	GWGCWC	2 cut(s)	346, 364
BslFI	GGGAC	1 cut(s)	48
BslI	CCNNNNNNNGG	2 cut(s)	338, 436
BsmFI	GGGAC	1 cut(s)	48
Bsp1286I	GDGCHC	2 cut(s)	346, 364
Bsp143I	GATC	1 cut(s)	145
BspACI	CCGC	1 cut(s)	312
BspCNI	CTCAG	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	36, 64
BsrI	ACTGG	2 cut(s)	184, 313
BssECI	CCNNGG	1 cut(s)	58
BssMI	GATC	1 cut(s)	145
BssT1I	CCWWGG	1 cut(s)	58
Bst2UI	CCWGG	2 cut(s)	333, 339
BstBAI	YACGTR	1 cut(s)	139
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	345
BstENI	CCTNNNNNAGG	1 cut(s)	336
BstF5I	GGATG	3 cut(s)	82, 214, 406
BstKTI	GATC	1 cut(s)	148
BstMBI	GATC	1 cut(s)	145
BstMWI	GCNNNNNNNGC	3 cut(s)	236, 350, 359
BstNI	CCWGG	2 cut(s)	333, 339
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	331, 337
BstV1I	GCAGC	2 cut(s)	214, 251
BstV2I	GAAGAC	2 cut(s)	51, 207
BtsCI	GGATG	3 cut(s)	82, 214, 406
BtsIMutI	CAGTG	1 cut(s)	177
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	2 cut(s)	62, 335
CseI	GACGC	1 cut(s)	102
CsiI	ACCWGGT	1 cut(s)	331
CviAII	CATG	1 cut(s)	86
CviJI	RGCY	4 cut(s)	37, 200, 298, 460
CviKI_1	RGCY	4 cut(s)	37, 200, 298, 460
DdeI	CTNAG	1 cut(s)	345
DpnI	GATC	1 cut(s)	147
DpnII	GATC	1 cut(s)	145
Eco130I	CCWWGG	1 cut(s)	58
Eco47I	GGWCC	2 cut(s)	62, 335
EcoNI	CCTNNNNNAGG	1 cut(s)	336
EcoRII	CCWGG	2 cut(s)	331, 337
EcoT14I	CCWWGG	1 cut(s)	58
ErhI	CCWWGG	1 cut(s)	58
FaeI	CATG	1 cut(s)	89
FaiI	YATR	8 cut(s)	87, 111, 188, 223, 225, 233, 291, 395
FaqI	GGGAC	1 cut(s)	48
FatI	CATG	1 cut(s)	85
FauNDI	CATATG	1 cut(s)	223
Fnu4HI	GCNGC	3 cut(s)	228, 240, 313
FokI	GGATG	3 cut(s)	89, 221, 413
Fsp4HI	GCNGC	3 cut(s)	228, 240, 313
GluI	GCNGC	3 cut(s)	228, 240, 313
HgaI	GACGC	1 cut(s)	102
Hin1II	CATG	1 cut(s)	89
HindIII	AAGCTT	1 cut(s)	296
HinfI	GANTC	2 cut(s)	212, 406
Hpy188III	TCNNGA	2 cut(s)	153, 375
HpyAV	CCTTC	5 cut(s)	19, 150, 184, 438, 447
HpyCH4IV	ACGT	2 cut(s)	128, 138
HpyCH4V	TGCA	5 cut(s)	101, 239, 254, 264, 284
HpyF10VI	GCNNNNNNNGC	3 cut(s)	236, 350, 359
HpyF3I	CTNAG	1 cut(s)	345
HpySE526I	ACGT	2 cut(s)	128, 138
Hsp92II	CATG	1 cut(s)	89
Kzo9I	GATC	1 cut(s)	145
LmnI	GCTCC	1 cut(s)	34
LpnPI	CCDG	9 cut(s)	138, 165, 190, 294, 318, 324, 345, 351, 360
Lsp1109I	GCAGC	2 cut(s)	214, 251
LweI	GCATC	1 cut(s)	251
MabI	ACCWGGT	1 cut(s)	331
MaeII	ACGT	2 cut(s)	128, 138
MaeIII	GTNAC	3 cut(s)	52, 139, 403
MalI	GATC	1 cut(s)	147
MboI	GATC	1 cut(s)	145
MboII	GAAGA	4 cut(s)	31, 34, 56, 207
MhlI	GDGCHC	2 cut(s)	346, 364
MluCI	AATT	2 cut(s)	269, 384
MlyI	GAGTC	2 cut(s)	221, 400
MnlI	CCTC	4 cut(s)	365, 391, 443, 450
MseI	TTAA	2 cut(s)	195, 294
MslI	CAYNNNNRTG	2 cut(s)	108, 259
MspR9I	CCNGG	2 cut(s)	333, 339
MvaI	CCWGG	2 cut(s)	333, 339
MwoI	GCNNNNNNNGC	3 cut(s)	236, 350, 359
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	1 cut(s)	145
NlaIII	CATG	1 cut(s)	89
NlaIV	GGNNCC	2 cut(s)	36, 64
NmuCI	GTSAC	1 cut(s)	403
NspI	RCATGY	1 cut(s)	89
PkrI	GCNGC	3 cut(s)	229, 241, 314
PleI	GAGTC	2 cut(s)	220, 400
PpsI	GAGTC	2 cut(s)	220, 400
Ppu21I	YACGTR	1 cut(s)	139
Psp6I	CCWGG	2 cut(s)	331, 337
PspGI	CCWGG	2 cut(s)	331, 337
PspN4I	GGNNCC	2 cut(s)	36, 64
PspPI	GGNCC	2 cut(s)	62, 335
RseI	CAYNNNNRTG	2 cut(s)	108, 259
SaqAI	TTAA	2 cut(s)	195, 294
SatI	GCNGC	3 cut(s)	228, 240, 313
Sau3AI	GATC	1 cut(s)	145
Sau96I	GGNCC	2 cut(s)	62, 335
SchI	GAGTC	2 cut(s)	221, 400
ScrFI	CCNGG	2 cut(s)	333, 339
SduI	GDGCHC	2 cut(s)	346, 364
SetI	ASST	8 cut(s)	30, 131, 141, 195, 300, 334, 343, 418
SexAI	ACCWGGT	1 cut(s)	331
SfaNI	GCATC	1 cut(s)	251
SinI	GGWCC	2 cut(s)	62, 335
SmiMI	CAYNNNNRTG	2 cut(s)	108, 259
SmlI	CTYRAG	1 cut(s)	71
SmoI	CTYRAG	1 cut(s)	71
Sse9I	AATT	2 cut(s)	269, 384
SsiI	CCGC	1 cut(s)	312
StyD4I	CCNGG	2 cut(s)	331, 337
StyI	CCWWGG	1 cut(s)	58
TaiI	ACGT	2 cut(s)	131, 141
TaqI	TCGA	1 cut(s)	17
TasI	AATT	2 cut(s)	269, 384
TauI	GCSGC	1 cut(s)	315
Tru1I	TTAA	2 cut(s)	195, 294
Tru9I	TTAA	2 cut(s)	195, 294
TscAI	CASTG	1 cut(s)	184
TseFI	GTSAC	1 cut(s)	403
TseI	GCWGC	2 cut(s)	227, 239
Tsp45I	GTSAC	1 cut(s)	403
TspDTI	ATGAA	3 cut(s)	121, 203, 278
TspGWI	ACGGA	1 cut(s)	347
TspRI	CASTG	1 cut(s)	184
VpaK11BI	GGWCC	2 cut(s)	62, 335
XagI	CCTNNNNNAGG	1 cut(s)	336
XceI	RCATGY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.