Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Forward (+)

19503153 .. 19504973

Gene Structure 1821 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G52580.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGAAGAGAAAGACCAAAGAGCCAAAGGTTGAGAATGTGACTCTTGGACCAGCTGTTCGTGAAGGAGAGCAAGTCTTTGGAGTTGTTCACGTCTTTGCTTCATTCAACGACACTTTCATTCACGTGACTGATTTGTCTGGACGGGAAACACTTGTTCGCATCACTGGTGGAATGAAGGTGAAAGCCGACAGAGATGAGTCCTCACCTTATGCTGCTATGCTTGCGGCACAAGATGTTGCTCAGCGATGCAAGGAACTTGGAATCACTGCCATACATGTGAAACTCCGTGCCACTGGTGGTAACAAGACCAAGACCCCTGGACCTGGTGCTCAGTCTGCTCTAAGAGCCCTTGCCCGTTCTGGCATGAAAATTGGTCGCATTGAGGATGTGACTCCAATCCCAACCGACAGTACCCGCAGAAAGGGTGGAAGAAGAGGAAGGAGGCTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

150

Amino Acids

16.24

Weight (kDa)

10.6

Isoelectric Point (pI)

47.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Ribosomal_S11	PF00411	28 - 146	1.5e-47	Ribosomal protein S11

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	136
AciI	CCGC	2 cut(s)	227, 418
AcvI	CACGTG	1 cut(s)	127
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	2 cut(s)	326, 424
AflIII	ACRYGT	1 cut(s)	277
AgsI	TTSAA	1 cut(s)	109
AjiI	CACGTC	1 cut(s)	94
AjnI	CCWGG	2 cut(s)	319, 325
AloI	GAACNNNNNNTCC	2 cut(s)	42, 74
AluBI	AGCT	1 cut(s)	56
AluI	AGCT	1 cut(s)	56
Alw21I	GWGCWC	1 cut(s)	334
ApeKI	GCWGC	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	42, 74
AspS9I	GGNCC	2 cut(s)	50, 323
AsuHPI	GGTGA	2 cut(s)	193, 198
AvaII	GGWCC	2 cut(s)	50, 323
BanII	GRGCYC	1 cut(s)	352
BbrPI	CACGTG	1 cut(s)	127
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	1 cut(s)	202
BciT130I	CCWGG	2 cut(s)	321, 327
BisI	GCNGC	2 cut(s)	216, 228
BlpI	GCTNAGC	1 cut(s)	243
BlsI	GCNGC	2 cut(s)	217, 229
Bme1390I	CCNGG	2 cut(s)	321, 327
Bme18I	GGWCC	2 cut(s)	50, 323
BmgBI	CACGTC	1 cut(s)	94
BmgT120I	GGNCC	2 cut(s)	50, 323
BmrFI	CCNGG	2 cut(s)	321, 327
BmsI	GCATC	2 cut(s)	171, 239
Bpu1102I	GCTNAGC	1 cut(s)	243
BsaAI	YACGTR	1 cut(s)	127
BsaJI	CCNNGG	1 cut(s)	319
BsaXI	ACNNNNNCTCC	2 cut(s)	60, 90
Bsc4I	CCNNNNNNNGG	2 cut(s)	326, 424
Bse1I	ACTGG	2 cut(s)	172, 301
BseBI	CCWGG	2 cut(s)	321, 327
BseDI	CCNNGG	1 cut(s)	319
BseGI	GGATG	1 cut(s)	394
BseLI	CCNNNNNNNGG	2 cut(s)	326, 424
BseMII	CTCAG	2 cut(s)	257, 347
BseNI	ACTGG	2 cut(s)	172, 301
BseXI	GCAGC	1 cut(s)	202
BsiHKAI	GWGCWC	1 cut(s)	334
BslI	CCNNNNNNNGG	2 cut(s)	326, 424
Bsp1286I	GDGCHC	2 cut(s)	334, 352
Bsp1720I	GCTNAGC	1 cut(s)	243
BspACI	CCGC	2 cut(s)	227, 418
BspCNI	CTCAG	2 cut(s)	256, 346
BsrI	ACTGG	2 cut(s)	172, 301
BssECI	CCNNGG	1 cut(s)	319
Bst2UI	CCWGG	2 cut(s)	321, 327
Bst4CI	ACNGT	1 cut(s)	413
Bst6I	CTCTTC	2 cut(s)	2, 430
BstBAI	YACGTR	1 cut(s)	127
BstC8I	GCNNGC	1 cut(s)	225
BstDEI	CTNAG	3 cut(s)	243, 333, 344
BstF5I	GGATG	1 cut(s)	394
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
BstNI	CCWGG	2 cut(s)	321, 327
BstNSI	RCATGY	1 cut(s)	281
BstSCI	CCNGG	2 cut(s)	319, 325
BstV1I	GCAGC	1 cut(s)	202
BtgZI	GCGATG	1 cut(s)	262
BtrI	CACGTC	1 cut(s)	94
BtsCI	GGATG	1 cut(s)	394
BtsI	GCAGTG	1 cut(s)	267
BtsIMutI	CAGTG	3 cut(s)	165, 267, 294
Cac8I	GCNNGC	1 cut(s)	225
Cfr13I	GGNCC	2 cut(s)	50, 323
CsiI	ACCWGGT	1 cut(s)	325
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	2 cut(s)	278, 367
CviJI	RGCY	5 cut(s)	25, 56, 188, 350, 448
CviKI_1	RGCY	5 cut(s)	25, 56, 188, 350, 448
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	243, 333, 344
DrdI	GACNNNNNNGTC	1 cut(s)	136
DseDI	GACNNNNNNGTC	1 cut(s)	136
Eam1104I	CTCTTC	2 cut(s)	2, 430
EarI	CTCTTC	2 cut(s)	2, 430
Eco24I	GRGCYC	1 cut(s)	352
Eco47I	GGWCC	2 cut(s)	50, 323
Eco72I	CACGTG	1 cut(s)	127
EcoRII	CCWGG	2 cut(s)	319, 325
EcoT38I	GRGCYC	1 cut(s)	352
FaeI	CATG	2 cut(s)	281, 370
FaiI	YATR	5 cut(s)	213, 221, 275, 279, 368
FatI	CATG	2 cut(s)	277, 366
FauI	CCCGC	1 cut(s)	425
Fnu4HI	GCNGC	2 cut(s)	216, 228
FokI	GGATG	1 cut(s)	401
FriOI	GRGCYC	1 cut(s)	352
Fsp4HI	GCNGC	2 cut(s)	216, 228
GluI	GCNGC	2 cut(s)	216, 228
Hin1II	CATG	2 cut(s)	281, 370
HinfI	GANTC	4 cut(s)	43, 200, 264, 394
HphI	GGTGA	2 cut(s)	193, 198
Hpy166II	GTNNAC	1 cut(s)	91
Hpy188I	TCNGA	1 cut(s)	452
Hpy188III	TCNNGA	2 cut(s)	62, 141
Hpy8I	GTNNAC	1 cut(s)	91
HpyAV	CCTTC	3 cut(s)	59, 172, 435
HpyCH4III	ACNGT	1 cut(s)	413
HpyCH4IV	ACGT	2 cut(s)	93, 126
HpyCH4V	TGCA	1 cut(s)	252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
HpyF3I	CTNAG	3 cut(s)	243, 333, 344
HpySE526I	ACGT	2 cut(s)	93, 126
Hsp92II	CATG	2 cut(s)	281, 370
LpnPI	CCDG	9 cut(s)	66, 126, 153, 282, 306, 312, 333, 339, 348
Lsp1109I	GCAGC	1 cut(s)	202
LweI	GCATC	2 cut(s)	171, 239
MabI	ACCWGGT	1 cut(s)	325
MaeII	ACGT	2 cut(s)	93, 126
MaeIII	GTNAC	4 cut(s)	40, 127, 302, 391
MboII	GAAGA	3 cut(s)	19, 444, 447
MhlI	GDGCHC	2 cut(s)	334, 352
MluCI	AATT	1 cut(s)	372
MlyI	GAGTC	3 cut(s)	37, 209, 388
MnlI	CCTC	4 cut(s)	214, 379, 431, 438
MslI	CAYNNNNRTG	2 cut(s)	125, 278
MspA1I	CMGCKG	1 cut(s)	56
MspR9I	CCNGG	2 cut(s)	321, 327
MvaI	CCWGG	2 cut(s)	321, 327
MwoI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
NlaIII	CATG	2 cut(s)	281, 370
NmuCI	GTSAC	3 cut(s)	40, 127, 391
NspI	RCATGY	1 cut(s)	281
PciI	ACATGT	1 cut(s)	277
PfeI	GAWTC	1 cut(s)	264
PkrI	GCNGC	2 cut(s)	217, 229
PleI	GAGTC	3 cut(s)	37, 208, 388
PmaCI	CACGTG	1 cut(s)	127
PmlI	CACGTG	1 cut(s)	127
PpsI	GAGTC	3 cut(s)	37, 208, 388
Ppu21I	YACGTR	1 cut(s)	127
PscI	ACATGT	1 cut(s)	277
Psp6I	CCWGG	2 cut(s)	319, 325
PspCI	CACGTG	1 cut(s)	127
PspGI	CCWGG	2 cut(s)	319, 325
PspPI	GGNCC	2 cut(s)	50, 323
PvuII	CAGCTG	1 cut(s)	56
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
RseI	CAYNNNNRTG	2 cut(s)	125, 278
SatI	GCNGC	2 cut(s)	216, 228
Sau96I	GGNCC	2 cut(s)	50, 323
SchI	GAGTC	3 cut(s)	37, 209, 388
ScrFI	CCNGG	2 cut(s)	321, 327
SduI	GDGCHC	2 cut(s)	334, 352
SetI	ASST	7 cut(s)	33, 58, 96, 129, 183, 211, 328
SexAI	ACCWGGT	1 cut(s)	325
SfaNI	GCATC	2 cut(s)	171, 239
SinI	GGWCC	2 cut(s)	50, 323
SmiMI	CAYNNNNRTG	2 cut(s)	125, 278
Sse9I	AATT	1 cut(s)	372
SsiI	CCGC	2 cut(s)	227, 418
StyD4I	CCNGG	2 cut(s)	319, 325
TaaI	ACNGT	1 cut(s)	413
TaiI	ACGT	2 cut(s)	96, 129
TaqI	TCGA	1 cut(s)	5
TasI	AATT	1 cut(s)	372
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	264
TscAI	CASTG	3 cut(s)	172, 274, 301
TseFI	GTSAC	3 cut(s)	40, 127, 391
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	3 cut(s)	40, 127, 391
TspDTI	ATGAA	4 cut(s)	93, 109, 191, 383
TspGWI	ACGGA	1 cut(s)	278
TspRI	CASTG	3 cut(s)	172, 274, 301
VpaK11BI	GGWCC	2 cut(s)	50, 323
XceI	RCATGY	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.