pycom10g21950

Ribosomal protein S11

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0006061
Physical Location & Seq
Forward (+)
24505807 .. 24507624
1818 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g21950.3

Sequence Viewer

Length: 453 bp
ATGTCGAAGAAGAAGGTTAGAGAGCCAAAGGAAGACAATGTCACCCTTGGTCCCATCCTCAAGGATGGAGAACATGCCTTTGGTGTTGCACACATTTATGCGTCATTCAATGACACATTCATTCACGTGACTGATCTTTCAGGAAGAGAAACCCTTGTCCGTATCACTGGTGGTATGAAGGTGAAGGCTGACAGGGACGAGTCTTCCCCATATGCTGCTATGCTTGCAGCACAGGATGTTGCGCAGAGATGCAAGGAATTGGGTATTACTGCACTTCATATTAAGCTCCGTGCCACTGGTGGGAACAAAACTAAAACACCTGGTCCAGGTGCCCAGTCTGCCCTCCGGGCTCTTGCTCGTTCTGGAATGAGAATTGGTCGTATAGAGGATGTGACTCCAATTCCAACTGACAGCACCCGTAGAAAGGGTGGAAGGAGAGGAAGGAGGCTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03010 map03010
Pfam Domains
Protein Families
Ribosomal_S11

Protein Analysis

151

Amino Acids

16.29

Weight (kDa)

10.35

Isoelectric Point (pI)

50.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 243
AccB1I GGYRCC 1 cut(s) 329
AcvI CACGTG 1 cut(s) 127
AfiI CCNNNNNNNGG 3 cut(s) 300, 326, 424
AgsI TTSAA 1 cut(s) 109
AjnI CCWGG 2 cut(s) 319, 325
AjuI GAANNNNNNNTTGG 2 cut(s) 63, 95
AluBI AGCT 1 cut(s) 286
AluI AGCT 1 cut(s) 286
ApeKI GCWGC 2 cut(s) 215, 227
AspLEI GCGC 1 cut(s) 244
AspS9I GGNCC 2 cut(s) 50, 323
AsuC2I CCSGG 1 cut(s) 347
AsuHPI GGTGA 2 cut(s) 34, 193
AvaII GGWCC 2 cut(s) 50, 323
BaeGI GKGCMC 1 cut(s) 334
BanI GGYRCC 1 cut(s) 329
BanII GRGCYC 1 cut(s) 352
BbrPI CACGTG 1 cut(s) 127
BbsI GAAGAC 2 cut(s) 39, 195
BbvI GCAGC 2 cut(s) 202, 239
BccI CCATC 2 cut(s) 59, 62
BciT130I CCWGG 2 cut(s) 321, 327
BcnI CCSGG 1 cut(s) 347
BglI GCCNNNNNGGC 1 cut(s) 347
BisI GCNGC 2 cut(s) 216, 228
BlsI GCNGC 2 cut(s) 217, 229
Bme1390I CCNGG 3 cut(s) 321, 327, 347
Bme18I GGWCC 2 cut(s) 50, 323
BmgT120I GGNCC 2 cut(s) 50, 323
BmiI GGNNCC 2 cut(s) 52, 331
BmrFI CCNGG 3 cut(s) 321, 327, 347
BmrI ACTGGG 1 cut(s) 328
BmsI GCATC 1 cut(s) 239
BmuI ACTGGG 1 cut(s) 328
BpiI GAAGAC 2 cut(s) 39, 195
BpuEI CTTGAG 1 cut(s) 44
BpuMI CCSGG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 127
BsaJI CCNNGG 1 cut(s) 46
Bsc4I CCNNNNNNNGG 3 cut(s) 300, 326, 424
Bse1I ACTGG 3 cut(s) 172, 301, 334
BseBI CCWGG 2 cut(s) 321, 327
BseDI CCNNGG 1 cut(s) 46
BseGI GGATG 4 cut(s) 54, 70, 241, 394
BseLI CCNNNNNNNGG 3 cut(s) 300, 326, 424
BseNI ACTGG 3 cut(s) 172, 301, 334
BseSI GKGCMC 1 cut(s) 334
BseXI GCAGC 2 cut(s) 202, 239
BsgI GTGCAG 1 cut(s) 255
BshNI GGYRCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 346
BslFI GGGAC 2 cut(s) 36, 209
BslI CCNNNNNNNGG 3 cut(s) 300, 326, 424
BsmFI GGGAC 2 cut(s) 36, 209
Bsp1286I GDGCHC 2 cut(s) 334, 352
Bsp143I GATC 1 cut(s) 133
BspLI GGNNCC 2 cut(s) 52, 331
BspT107I GGYRCC 1 cut(s) 329
BsrI ACTGG 3 cut(s) 172, 301, 334
BssECI CCNNGG 1 cut(s) 46
BssMI GATC 1 cut(s) 133
BssT1I CCWWGG 1 cut(s) 46
Bst2UI CCWGG 2 cut(s) 321, 327
Bst6I CTCTTC 1 cut(s) 139
BstBAI YACGTR 1 cut(s) 127
BstC8I GCNNGC 1 cut(s) 225
BstENI CCTNNNNNAGG 1 cut(s) 324
BstF5I GGATG 4 cut(s) 54, 70, 241, 394
BstHHI GCGC 1 cut(s) 244
BstKTI GATC 1 cut(s) 136
BstMBI GATC 1 cut(s) 133
BstMWI GCNNNNNNNGC 3 cut(s) 224, 338, 347
BstNI CCWGG 2 cut(s) 321, 327
BstNSI RCATGY 1 cut(s) 77
BstSCI CCNGG 3 cut(s) 319, 325, 345
BstSLI GKGCMC 1 cut(s) 334
BstV1I GCAGC 2 cut(s) 202, 239
BstV2I GAAGAC 2 cut(s) 39, 195
BtsCI GGATG 4 cut(s) 54, 70, 241, 394
BtsIMutI CAGTG 2 cut(s) 165, 294
Cac8I GCNNGC 1 cut(s) 225
CfoI GCGC 1 cut(s) 244
Cfr13I GGNCC 2 cut(s) 50, 323
CseI GACGC 1 cut(s) 90
CsiI ACCWGGT 1 cut(s) 319
CviAII CATG 1 cut(s) 74
CviJI RGCY 5 cut(s) 25, 188, 286, 350, 448
CviKI_1 RGCY 5 cut(s) 25, 188, 286, 350, 448
DpnI GATC 1 cut(s) 135
DpnII GATC 1 cut(s) 133
Eam1104I CTCTTC 1 cut(s) 139
EarI CTCTTC 1 cut(s) 139
Eco130I CCWWGG 1 cut(s) 46
Eco24I GRGCYC 1 cut(s) 352
Eco47I GGWCC 2 cut(s) 50, 323
Eco72I CACGTG 1 cut(s) 127
EcoNI CCTNNNNNAGG 1 cut(s) 324
EcoRII CCWGG 2 cut(s) 319, 325
EcoT14I CCWWGG 1 cut(s) 46
EcoT38I GRGCYC 1 cut(s) 352
ErhI CCWWGG 1 cut(s) 46
FaeI CATG 1 cut(s) 77
FaiI YATR 8 cut(s) 75, 99, 176, 211, 213, 221, 279, 383
FaqI GGGAC 2 cut(s) 36, 209
FatI CATG 1 cut(s) 73
FauNDI CATATG 1 cut(s) 211
Fnu4HI GCNGC 2 cut(s) 216, 228
FokI GGATG 4 cut(s) 41, 77, 248, 401
FriOI GRGCYC 1 cut(s) 352
Fsp4HI GCNGC 2 cut(s) 216, 228
FspI TGCGCA 1 cut(s) 243
GlaI GCGC 1 cut(s) 243
GluI GCNGC 2 cut(s) 216, 228
HapII CCGG 1 cut(s) 346
HgaI GACGC 1 cut(s) 90
HhaI GCGC 1 cut(s) 244
Hin1II CATG 1 cut(s) 77
Hin6I GCGC 1 cut(s) 242
HinP1I GCGC 1 cut(s) 242
HinfI GANTC 2 cut(s) 200, 394
HpaII CCGG 1 cut(s) 346
HphI GGTGA 2 cut(s) 34, 193
Hpy188III TCNNGA 2 cut(s) 141, 363
HpyAV CCTTC 5 cut(s) 7, 172, 178, 426, 435
HpyCH4IV ACGT 1 cut(s) 126
HpyCH4V TGCA 4 cut(s) 89, 227, 252, 272
HpyF10VI GCNNNNNNNGC 3 cut(s) 224, 338, 347
HpySE526I ACGT 1 cut(s) 126
Hsp92II CATG 1 cut(s) 77
HspAI GCGC 1 cut(s) 242
Kzo9I GATC 1 cut(s) 133
LmnI GCTCC 1 cut(s) 291
Lsp1109I GCAGC 2 cut(s) 202, 239
LweI GCATC 1 cut(s) 239
MabI ACCWGGT 1 cut(s) 319
MaeII ACGT 1 cut(s) 126
MaeIII GTNAC 3 cut(s) 40, 127, 391
MalI GATC 1 cut(s) 135
MboI GATC 1 cut(s) 133
MboII GAAGA 5 cut(s) 19, 22, 44, 156, 195
MhlI GDGCHC 2 cut(s) 334, 352
MluCI AATT 3 cut(s) 257, 372, 399
MlyI GAGTC 2 cut(s) 209, 388
MmeI TCCRAC 1 cut(s) 428
MnlI CCTC 5 cut(s) 68, 353, 379, 431, 438
MseI TTAA 1 cut(s) 282
MslI CAYNNNNRTG 2 cut(s) 96, 125
MspI CCGG 1 cut(s) 346
MspR9I CCNGG 3 cut(s) 321, 327, 347
MvaI CCWGG 2 cut(s) 321, 327
MwoI GCNNNNNNNGC 3 cut(s) 224, 338, 347
NciI CCSGG 1 cut(s) 347
NdeI CATATG 1 cut(s) 211
NdeII GATC 1 cut(s) 133
NlaIII CATG 1 cut(s) 77
NlaIV GGNNCC 2 cut(s) 52, 331
NmuCI GTSAC 3 cut(s) 40, 127, 391
NsbI TGCGCA 1 cut(s) 243
NspI RCATGY 1 cut(s) 77
PflFI GACNNNGTC 1 cut(s) 38
PkrI GCNGC 2 cut(s) 217, 229
PleI GAGTC 2 cut(s) 208, 388
PmaCI CACGTG 1 cut(s) 127
PmlI CACGTG 1 cut(s) 127
PpsI GAGTC 2 cut(s) 208, 388
Ppu21I YACGTR 1 cut(s) 127
Psp6I CCWGG 2 cut(s) 319, 325
PspCI CACGTG 1 cut(s) 127
PspGI CCWGG 2 cut(s) 319, 325
PspN4I GGNNCC 2 cut(s) 52, 331
PspPI GGNCC 2 cut(s) 50, 323
PsyI GACNNNGTC 1 cut(s) 38
RseI CAYNNNNRTG 2 cut(s) 96, 125
SaqAI TTAA 1 cut(s) 282
SatI GCNGC 2 cut(s) 216, 228
Sau3AI GATC 1 cut(s) 133
Sau96I GGNCC 2 cut(s) 50, 323
SchI GAGTC 2 cut(s) 209, 388
ScrFI CCNGG 3 cut(s) 321, 327, 347
SduI GDGCHC 2 cut(s) 334, 352
SetI ASST 6 cut(s) 18, 129, 183, 288, 322, 331
SexAI ACCWGGT 1 cut(s) 319
SfaNI GCATC 1 cut(s) 239
SinI GGWCC 2 cut(s) 50, 323
SmiMI CAYNNNNRTG 2 cut(s) 96, 125
SmlI CTYRAG 1 cut(s) 59
SmoI CTYRAG 1 cut(s) 59
Sse9I AATT 3 cut(s) 257, 372, 399
StyD4I CCNGG 3 cut(s) 319, 325, 345
StyI CCWWGG 1 cut(s) 46
TaiI ACGT 1 cut(s) 129
TaqI TCGA 1 cut(s) 5
TasI AATT 3 cut(s) 257, 372, 399
Tru1I TTAA 1 cut(s) 282
Tru9I TTAA 1 cut(s) 282
TscAI CASTG 2 cut(s) 172, 301
TseFI GTSAC 3 cut(s) 40, 127, 391
TseI GCWGC 2 cut(s) 215, 227
Tsp45I GTSAC 3 cut(s) 40, 127, 391
TspDTI ATGAA 3 cut(s) 109, 191, 266
TspGWI ACGGA 2 cut(s) 149, 278
TspRI CASTG 2 cut(s) 172, 301
Tth111I GACNNNGTC 1 cut(s) 38
VpaK11BI GGWCC 2 cut(s) 50, 323
XagI CCTNNNNNAGG 1 cut(s) 324
XceI RCATGY 1 cut(s) 77
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.