Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Reverse (-)

10477401 .. 10480206

Gene Structure 2806 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G133500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 456 bp

ATGTCGTCCAGGAGGAAGCAAAGGGAACCAAAGGAAGAAAATGTGACCCTTGGACCTGCTTTACGGGACGGAGAACATGCATTTGGTGTGGCTCACATTTTTGCATCATTTAATGATACTTTCATTCATGTGACTGATTTGTCTGGAAGAGAAACCCTCGTTCGCATTACTGGTGGTATGAAGGTAAAGGCTGATAGAGACGAGTCTTCACCATATGCGGCCATGCTTGCAGCACAGGATGTGTCTCAGAGATGCAAGGAACTAGGAATTACTGCTCTTCATATTAAGCTCCGTGCCACTGGCGGCAACAAAACCAAGACACCTGGTCCTGGTGCTCAGTCTGCACTACGGGCTCTTGCTCGTTCAGGAATGAGAATTGGCCGCATTGAGGATGTGACTCCAATCCCAACTGACAGCACCCGAAGAAAGGGTGGTAGAAGAGGTAGAAGATTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

152

Amino Acids

16.46

Weight (kDa)

10.85

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	139
Acc36I	ACCTGC	1 cut(s)	64
AciI	CCGC	3 cut(s)	218, 303, 382
AcoI	YGGCCR	2 cut(s)	219, 379
AfiI	CCNNNNNNNGG	3 cut(s)	329, 388, 427
AhdI	GACNNNNNGTC	1 cut(s)	324
AjnI	CCWGG	3 cut(s)	8, 322, 328
AjuI	GAANNNNNNNTTGG	2 cut(s)	66, 98
AluBI	AGCT	1 cut(s)	289
AluI	AGCT	1 cut(s)	289
Alw21I	GWGCWC	1 cut(s)	337
Alw26I	GTCTC	2 cut(s)	192, 249
AoxI	GGCC	2 cut(s)	219, 379
ApeKI	GCWGC	1 cut(s)	230
AspS9I	GGNCC	2 cut(s)	53, 326
AsuHPI	GGTGA	1 cut(s)	201
AvaII	GGWCC	2 cut(s)	53, 326
BanII	GRGCYC	1 cut(s)	355
BbsI	GAAGAC	1 cut(s)	198
Bbv12I	GWGCWC	1 cut(s)	337
BbvI	GCAGC	1 cut(s)	242
BciT130I	CCWGG	3 cut(s)	10, 324, 330
BcoDI	GTCTC	2 cut(s)	192, 249
BfaI	CTAG	1 cut(s)	263
BfuAI	ACCTGC	1 cut(s)	64
BisI	GCNGC	4 cut(s)	219, 231, 304, 382
BlsI	GCNGC	4 cut(s)	220, 232, 305, 383
Bme1390I	CCNGG	3 cut(s)	10, 324, 330
Bme18I	GGWCC	2 cut(s)	53, 326
BmeRI	GACNNNNNGTC	1 cut(s)	324
BmgT120I	GGNCC	2 cut(s)	53, 326
BmiI	GGNNCC	1 cut(s)	27
BmrFI	CCNGG	3 cut(s)	10, 324, 330
BmsI	GCATC	2 cut(s)	113, 242
BpiI	GAAGAC	1 cut(s)	198
BplI	GAGNNNNNCTC	2 cut(s)	141, 173
BsaJI	CCNNGG	1 cut(s)	49
Bsc4I	CCNNNNNNNGG	3 cut(s)	329, 388, 427
Bse1I	ACTGG	2 cut(s)	175, 304
BseBI	CCWGG	3 cut(s)	10, 324, 330
BseDI	CCNNGG	1 cut(s)	49
BseGI	GGATG	2 cut(s)	244, 397
BseLI	CCNNNNNNNGG	3 cut(s)	329, 388, 427
BseMII	CTCAG	2 cut(s)	260, 350
BseNI	ACTGG	2 cut(s)	175, 304
BseXI	GCAGC	1 cut(s)	242
BsgI	GTGCAG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	221, 381
BsiHKAI	GWGCWC	1 cut(s)	337
BslFI	GGGAC	1 cut(s)	80
BslI	CCNNNNNNNGG	3 cut(s)	329, 388, 427
BsmAI	GTCTC	2 cut(s)	192, 249
BsmBI	CGTCTC	1 cut(s)	192
BsmFI	GGGAC	1 cut(s)	80
BsnI	GGCC	2 cut(s)	221, 381
Bsp1286I	GDGCHC	2 cut(s)	337, 355
BspACI	CCGC	3 cut(s)	218, 303, 382
BspANI	GGCC	2 cut(s)	221, 381
BspCNI	CTCAG	2 cut(s)	259, 349
BspLI	GGNNCC	1 cut(s)	27
BspMI	ACCTGC	1 cut(s)	64
BspQI	GCTCTTC	1 cut(s)	282
BsrI	ACTGG	2 cut(s)	175, 304
BssECI	CCNNGG	1 cut(s)	49
BssT1I	CCWWGG	1 cut(s)	49
Bst2UI	CCWGG	3 cut(s)	10, 324, 330
Bst6I	CTCTTC	3 cut(s)	142, 282, 433
BstC8I	GCNNGC	1 cut(s)	228
BstDEI	CTNAG	2 cut(s)	246, 336
BstF5I	GGATG	2 cut(s)	244, 397
BstMAI	GTCTC	2 cut(s)	192, 249
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
BstNI	CCWGG	3 cut(s)	10, 324, 330
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	8, 322, 328
BstV1I	GCAGC	1 cut(s)	242
BstV2I	GAAGAC	1 cut(s)	198
BsuRI	GGCC	2 cut(s)	221, 381
BtsCI	GGATG	2 cut(s)	244, 397
BtsIMutI	CAGTG	1 cut(s)	297
BveI	ACCTGC	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	228
Cfr13I	GGNCC	2 cut(s)	53, 326
CsiI	ACCWGGT	1 cut(s)	322
CviAII	CATG	3 cut(s)	77, 128, 223
CviJI	RGCY	6 cut(s)	92, 191, 221, 289, 353, 381
CviKI_1	RGCY	6 cut(s)	92, 191, 221, 289, 353, 381
DdeI	CTNAG	2 cut(s)	246, 336
DrdI	GACNNNNNNGTC	1 cut(s)	139
DriI	GACNNNNNGTC	1 cut(s)	324
DseDI	GACNNNNNNGTC	1 cut(s)	139
EaeI	YGGCCR	2 cut(s)	219, 379
Eam1104I	CTCTTC	3 cut(s)	142, 282, 433
Eam1105I	GACNNNNNGTC	1 cut(s)	324
EarI	CTCTTC	3 cut(s)	142, 282, 433
Eco130I	CCWWGG	1 cut(s)	49
Eco24I	GRGCYC	1 cut(s)	355
Eco47I	GGWCC	2 cut(s)	53, 326
EcoRII	CCWGG	3 cut(s)	8, 322, 328
EcoT14I	CCWWGG	1 cut(s)	49
EcoT22I	ATGCAT	1 cut(s)	82
EcoT38I	GRGCYC	1 cut(s)	355
ErhI	CCWWGG	1 cut(s)	49
Esp3I	CGTCTC	1 cut(s)	192
FaeI	CATG	3 cut(s)	80, 131, 226
FaiI	YATR	7 cut(s)	78, 129, 179, 214, 216, 224, 282
FaqI	GGGAC	1 cut(s)	80
FatI	CATG	3 cut(s)	76, 127, 222
FauNDI	CATATG	1 cut(s)	214
Fnu4HI	GCNGC	4 cut(s)	219, 231, 304, 382
FokI	GGATG	2 cut(s)	251, 404
FriOI	GRGCYC	1 cut(s)	355
Fsp4HI	GCNGC	4 cut(s)	219, 231, 304, 382
FspBI	CTAG	1 cut(s)	263
GluI	GCNGC	4 cut(s)	219, 231, 304, 382
HaeIII	GGCC	2 cut(s)	221, 381
Hin1II	CATG	3 cut(s)	80, 131, 226
HinfI	GANTC	2 cut(s)	203, 397
HphI	GGTGA	1 cut(s)	201
Hpy188I	TCNGA	1 cut(s)	249
Hpy188III	TCNNGA	2 cut(s)	144, 366
HpyAV	CCTTC	1 cut(s)	175
HpyCH4V	TGCA	5 cut(s)	80, 104, 230, 255, 344
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
HpyF3I	CTNAG	2 cut(s)	246, 336
Hsp92II	CATG	3 cut(s)	80, 131, 226
LguI	GCTCTTC	1 cut(s)	282
LmnI	GCTCC	1 cut(s)	294
Lsp1109I	GCAGC	1 cut(s)	242
LweI	GCATC	2 cut(s)	113, 242
MabI	ACCWGGT	1 cut(s)	322
MaeI	CTAG	1 cut(s)	263
MaeIII	GTNAC	3 cut(s)	43, 130, 394
MboII	GAAGA	6 cut(s)	47, 159, 198, 269, 435, 450
MhlI	GDGCHC	2 cut(s)	337, 355
MluCI	AATT	2 cut(s)	267, 375
MlyI	GAGTC	2 cut(s)	212, 391
MnlI	CCTC	4 cut(s)	6, 167, 382, 434
Mph1103I	ATGCAT	1 cut(s)	82
MseI	TTAA	2 cut(s)	111, 285
MslI	CAYNNNNRTG	1 cut(s)	128
MspR9I	CCNGG	3 cut(s)	10, 324, 330
MvaI	CCWGG	3 cut(s)	10, 324, 330
MwoI	GCNNNNNNNGC	3 cut(s)	227, 341, 350
NdeI	CATATG	1 cut(s)	214
NlaIII	CATG	3 cut(s)	80, 131, 226
NlaIV	GGNNCC	1 cut(s)	27
NmuCI	GTSAC	3 cut(s)	43, 130, 394
NsiI	ATGCAT	1 cut(s)	82
NspI	RCATGY	1 cut(s)	80
PciSI	GCTCTTC	1 cut(s)	282
PfoI	TCCNGGA	1 cut(s)	8
PkrI	GCNGC	4 cut(s)	220, 232, 305, 383
PleI	GAGTC	2 cut(s)	211, 391
PpsI	GAGTC	2 cut(s)	211, 391
Psp6I	CCWGG	3 cut(s)	8, 322, 328
PspGI	CCWGG	3 cut(s)	8, 322, 328
PspN4I	GGNNCC	1 cut(s)	27
PspPI	GGNCC	2 cut(s)	53, 326
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	282
SaqAI	TTAA	2 cut(s)	111, 285
SatI	GCNGC	4 cut(s)	219, 231, 304, 382
Sau96I	GGNCC	2 cut(s)	53, 326
SchI	GAGTC	2 cut(s)	212, 391
ScrFI	CCNGG	3 cut(s)	10, 324, 330
SduI	GDGCHC	2 cut(s)	337, 355
SetI	ASST	5 cut(s)	58, 186, 291, 325, 445
SexAI	ACCWGGT	1 cut(s)	322
SfaNI	GCATC	2 cut(s)	113, 242
SinI	GGWCC	2 cut(s)	53, 326
SmiMI	CAYNNNNRTG	1 cut(s)	128
Sse9I	AATT	2 cut(s)	267, 375
SsiI	CCGC	3 cut(s)	218, 303, 382
SspMI	CTAG	1 cut(s)	263
StyD4I	CCNGG	3 cut(s)	8, 322, 328
StyI	CCWWGG	1 cut(s)	49
TasI	AATT	2 cut(s)	267, 375
TauI	GCSGC	3 cut(s)	221, 306, 384
Tru1I	TTAA	2 cut(s)	111, 285
Tru9I	TTAA	2 cut(s)	111, 285
TscAI	CASTG	1 cut(s)	304
TseFI	GTSAC	3 cut(s)	43, 130, 394
TseI	GCWGC	1 cut(s)	230
Tsp45I	GTSAC	3 cut(s)	43, 130, 394
TspDTI	ATGAA	4 cut(s)	112, 116, 194, 269
TspGWI	ACGGA	2 cut(s)	84, 281
TspRI	CASTG	1 cut(s)	304
VpaK11BI	GGWCC	2 cut(s)	53, 326
XceI	RCATGY	1 cut(s)	80
XspI	CTAG	1 cut(s)	263
Zsp2I	ATGCAT	1 cut(s)	82

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.