Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0006061

Physical Location & Seq

Genomic Coordinates Forward (+)

13228675 .. 13231401

Gene Structure 2727 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G102700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

ATGTCGAGAAGGAAGACCAGGGAGCCCAAGGAGGAAAATGTCACTCTCGGACCTGCTCTCCGAGATGGAGAGCATGCTTTTGGTGTTGCTCATATTTTTGCCTCATTTAATGATACATTCATTCATGTAACTGACCTGTCTGGAAGGGAGACACTTGTTCGCATCACTGGTGGTATGAAGGTGAAAGCTGATAGAGATGAATCATCGCCATATGCAGCCATGCTTGCGGCTCAGGATGTTTCTCAACGGTGCAAGGAGCTTGGCATTACTGCTTTACATATAAAGCTCCGGGCTACTGGAGGGAACAAGACTAAGACTCCTGGTCCTGGTGCCCAATCAGCACTCAGAGCCCTGGCTCGTTCTGGCATGAGAATTGGTCGTATTGAGGATGTGACTCCAATTCCCACTGACAGTACTCGTAGAAAGGGTGGCAGAAGGGGAAGAAGGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000028 GO:0000462 GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0003735 GO:0005198 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0005844 GO:0006139 GO:0006364 GO:0006396 GO:0006412 GO:0006518 GO:0006725 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0010467 GO:0015935 GO:0016043 GO:0016070 GO:0016072 GO:0019538 GO:0019843 GO:0022607 GO:0022613 GO:0022618 GO:0022626 GO:0022627 GO:0030490 GO:0031974 GO:0031981 GO:0032991 GO:0034470 GO:0034622 GO:0034641 GO:0034645 GO:0034660 GO:0042254 GO:0042255 GO:0042274 GO:0042788 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043603 GO:0043604 GO:0043933 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0046483 GO:0048027 GO:0065003 GO:0070013 GO:0070181 GO:0070925 GO:0071704 GO:0071826 GO:0071840 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_S11

Protein Analysis

151

Amino Acids

16.35

Weight (kDa)

10.85

Isoelectric Point (pI)

58.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006061)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36160 AT3G11510 AT3G52580
fragaria_vesca	FvH4_3g05730 FvH4_6g19310
malus_domestica	MD10G1263300.v1.1 MD12G1028700.v1.1
prunus_persica	Prupe.4G079500_v2.0.a1 Prupe.6G133500_v2.0.a1 Prupe.7G102700_v2.0.a1 Prupe.7G102700_v2.0.a1
pyrus_communis	pycom05g26420 pycom10g21950 pycom12g02750 pycom14g02700
rosa_chinensis	RchiOBHm_Chr3g0474551 RchiOBHm_Chr5g0013941
rosa_laevigata	RLG00000032053
rosa_multiflora	Rmu_sc0003598.1_g000017
rosa_roxburghii	Rroxscaffold_1G00062780 Rroxscaffold_6G00407080
rosa_rugosa	Rorug03G0141300 Rorug05G0013400
rosa_samantha	Rh3DG217500 Rh5CG116200 Rh5DG102900
rosa_wichuraiana	Rw3G017530

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	61
AccB1I	GGYRCC	1 cut(s)	329
AciI	CCGC	1 cut(s)	227
AfaI	GTAC	1 cut(s)	415
AfiI	CCNNNNNNNGG	1 cut(s)	326
AhdI	GACNNNNNGTC	1 cut(s)	321
AjnI	CCWGG	4 cut(s)	17, 319, 325, 351
AluBI	AGCT	3 cut(s)	188, 259, 286
AluI	AGCT	3 cut(s)	188, 259, 286
Alw26I	GTCTC	1 cut(s)	143
ApeKI	GCWGC	1 cut(s)	215
AspS9I	GGNCC	2 cut(s)	50, 323
AsuC2I	CCSGG	1 cut(s)	290
AsuHPI	GGTGA	1 cut(s)	193
AvaII	GGWCC	2 cut(s)	50, 323
BaeGI	GKGCMC	1 cut(s)	334
BanI	GGYRCC	1 cut(s)	329
BanII	GRGCYC	2 cut(s)	27, 352
BbsI	GAAGAC	1 cut(s)	20
BbvI	GCAGC	1 cut(s)	227
BccI	CCATC	1 cut(s)	59
BciT130I	CCWGG	4 cut(s)	19, 321, 327, 353
BcnI	CCSGG	1 cut(s)	290
BcoDI	GTCTC	1 cut(s)	143
BfuAI	ACCTGC	1 cut(s)	61
BisI	GCNGC	2 cut(s)	216, 228
BlsI	GCNGC	2 cut(s)	217, 229
BmcAI	AGTACT	1 cut(s)	415
Bme1390I	CCNGG	5 cut(s)	19, 290, 321, 327, 353
Bme18I	GGWCC	2 cut(s)	50, 323
BmeRI	GACNNNNNGTC	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	50, 323
BmiI	GGNNCC	2 cut(s)	24, 331
BmrFI	CCNGG	5 cut(s)	19, 290, 321, 327, 353
BmsI	GCATC	1 cut(s)	171
BpiI	GAAGAC	1 cut(s)	20
BpmI	CTGGAG	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	231
BpuMI	CCSGG	1 cut(s)	290
BsaJI	CCNNGG	3 cut(s)	18, 27, 351
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 301, 331
Bsc4I	CCNNNNNNNGG	1 cut(s)	326
Bse1I	ACTGG	2 cut(s)	172, 301
BseBI	CCWGG	4 cut(s)	19, 321, 327, 353
BseDI	CCNNGG	3 cut(s)	18, 27, 351
BseGI	GGATG	2 cut(s)	241, 394
BseLI	CCNNNNNNNGG	1 cut(s)	326
BseMII	CTCAG	2 cut(s)	245, 358
BseNI	ACTGG	2 cut(s)	172, 301
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	1 cut(s)	227
BshNI	GGYRCC	1 cut(s)	329
BsiSI	CCGG	1 cut(s)	289
BslI	CCNNNNNNNGG	1 cut(s)	326
BsmAI	GTCTC	1 cut(s)	143
Bsp1286I	GDGCHC	3 cut(s)	27, 334, 352
BspACI	CCGC	1 cut(s)	227
BspCNI	CTCAG	2 cut(s)	244, 357
BspLI	GGNNCC	2 cut(s)	24, 331
BspMI	ACCTGC	1 cut(s)	61
BspT107I	GGYRCC	1 cut(s)	329
BsrI	ACTGG	2 cut(s)	172, 301
BssECI	CCNNGG	3 cut(s)	18, 27, 351
BssT1I	CCWWGG	1 cut(s)	27
Bst2UI	CCWGG	4 cut(s)	19, 321, 327, 353
Bst4CI	ACNGT	2 cut(s)	249, 413
BstC8I	GCNNGC	2 cut(s)	75, 225
BstDEI	CTNAG	3 cut(s)	231, 312, 344
BstF5I	GGATG	2 cut(s)	241, 394
BstMAI	GTCTC	1 cut(s)	143
BstMWI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
BstNI	CCWGG	4 cut(s)	19, 321, 327, 353
BstNSI	RCATGY	1 cut(s)	77
BstSCI	CCNGG	5 cut(s)	17, 288, 319, 325, 351
BstSLI	GKGCMC	1 cut(s)	334
BstV1I	GCAGC	1 cut(s)	227
BstV2I	GAAGAC	1 cut(s)	20
BtgZI	GCGATG	1 cut(s)	189
BtsCI	GGATG	2 cut(s)	241, 394
BtsIMutI	CAGTG	2 cut(s)	165, 405
BveI	ACCTGC	1 cut(s)	61
Cac8I	GCNNGC	2 cut(s)	75, 225
Cfr13I	GGNCC	2 cut(s)	50, 323
Csp6I	GTAC	1 cut(s)	414
CviAII	CATG	4 cut(s)	74, 125, 220, 367
CviJI	RGCY	9 cut(s)	25, 188, 218, 230, 259, 286, 293, 350, 356
CviKI_1	RGCY	9 cut(s)	25, 188, 218, 230, 259, 286, 293, 350, 356
CviQI	GTAC	1 cut(s)	414
DdeI	CTNAG	3 cut(s)	231, 312, 344
DriI	GACNNNNNGTC	1 cut(s)	321
Eam1105I	GACNNNNNGTC	1 cut(s)	321
Eco130I	CCWWGG	1 cut(s)	27
Eco24I	GRGCYC	2 cut(s)	27, 352
Eco47I	GGWCC	2 cut(s)	50, 323
EcoRII	CCWGG	4 cut(s)	17, 319, 325, 351
EcoT14I	CCWWGG	1 cut(s)	27
EcoT38I	GRGCYC	2 cut(s)	27, 352
ErhI	CCWWGG	1 cut(s)	27
FaeI	CATG	4 cut(s)	77, 128, 223, 370
FatI	CATG	4 cut(s)	73, 124, 219, 366
FauNDI	CATATG	1 cut(s)	211
Fnu4HI	GCNGC	2 cut(s)	216, 228
FokI	GGATG	2 cut(s)	248, 401
FriOI	GRGCYC	2 cut(s)	27, 352
Fsp4HI	GCNGC	2 cut(s)	216, 228
GluI	GCNGC	2 cut(s)	216, 228
GsuI	CTGGAG	1 cut(s)	318
HapII	CCGG	1 cut(s)	289
Hin1II	CATG	4 cut(s)	77, 128, 223, 370
HinfI	GANTC	3 cut(s)	200, 316, 394
HpaII	CCGG	1 cut(s)	289
HphI	GGTGA	1 cut(s)	193
Hpy188I	TCNGA	3 cut(s)	50, 62, 347
Hpy188III	TCNNGA	3 cut(s)	6, 141, 233
HpyAV	CCTTC	5 cut(s)	3, 138, 172, 429, 438
HpyCH4III	ACNGT	2 cut(s)	249, 413
HpyCH4V	TGCA	2 cut(s)	215, 252
HpyF10VI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
HpyF3I	CTNAG	3 cut(s)	231, 312, 344
Hsp92II	CATG	4 cut(s)	77, 128, 223, 370
LmnI	GCTCC	3 cut(s)	22, 256, 291
Lsp1109I	GCAGC	1 cut(s)	227
LweI	GCATC	1 cut(s)	171
MaeIII	GTNAC	3 cut(s)	40, 127, 391
MboII	GAAGA	2 cut(s)	25, 453
MhlI	GDGCHC	3 cut(s)	27, 334, 352
MluCI	AATT	2 cut(s)	372, 399
MlyI	GAGTC	2 cut(s)	310, 388
MnlI	CCTC	4 cut(s)	25, 112, 293, 379
MseI	TTAA	1 cut(s)	108
MspI	CCGG	1 cut(s)	289
MspR9I	CCNGG	5 cut(s)	19, 290, 321, 327, 353
MvaI	CCWGG	4 cut(s)	19, 321, 327, 353
MwoI	GCNNNNNNNGC	3 cut(s)	224, 338, 347
NciI	CCSGG	1 cut(s)	290
NdeI	CATATG	1 cut(s)	211
NlaIII	CATG	4 cut(s)	77, 128, 223, 370
NlaIV	GGNNCC	2 cut(s)	24, 331
NmuCI	GTSAC	2 cut(s)	40, 391
NspI	RCATGY	1 cut(s)	77
PaeI	GCATGC	1 cut(s)	77
PfeI	GAWTC	1 cut(s)	200
PkrI	GCNGC	2 cut(s)	217, 229
PleI	GAGTC	2 cut(s)	310, 388
PpsI	GAGTC	2 cut(s)	310, 388
Psp6I	CCWGG	4 cut(s)	17, 319, 325, 351
PspGI	CCWGG	4 cut(s)	17, 319, 325, 351
PspN4I	GGNNCC	2 cut(s)	24, 331
PspPI	GGNCC	2 cut(s)	50, 323
RsaI	GTAC	1 cut(s)	415
RsaNI	GTAC	1 cut(s)	414
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	216, 228
Sau96I	GGNCC	2 cut(s)	50, 323
ScaI	AGTACT	1 cut(s)	415
SchI	GAGTC	2 cut(s)	310, 388
ScrFI	CCNGG	5 cut(s)	19, 290, 321, 327, 353
SduI	GDGCHC	3 cut(s)	27, 334, 352
SetI	ASST	7 cut(s)	55, 138, 183, 190, 261, 288, 449
SfaNI	GCATC	1 cut(s)	171
SinI	GGWCC	2 cut(s)	50, 323
SphI	GCATGC	1 cut(s)	77
Sse9I	AATT	2 cut(s)	372, 399
SsiI	CCGC	1 cut(s)	227
StyD4I	CCNGG	5 cut(s)	17, 288, 319, 325, 351
StyI	CCWWGG	1 cut(s)	27
TaaI	ACNGT	2 cut(s)	249, 413
TaqI	TCGA	1 cut(s)	5
TasI	AATT	2 cut(s)	372, 399
TatI	WGTACW	1 cut(s)	413
TauI	GCSGC	1 cut(s)	230
TfiI	GAWTC	1 cut(s)	200
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	2 cut(s)	172, 412
TseFI	GTSAC	2 cut(s)	40, 391
TseI	GCWGC	1 cut(s)	215
Tsp45I	GTSAC	2 cut(s)	40, 391
TspDTI	ATGAA	4 cut(s)	109, 113, 191, 213
TspRI	CASTG	2 cut(s)	172, 412
VpaK11BI	GGWCC	2 cut(s)	50, 323
XceI	RCATGY	1 cut(s)	77
ZrmI	AGTACT	1 cut(s)	415

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.