Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Forward (+)

15172061 .. 15173340

Gene Structure 1280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G36170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATTTTCGTGAAAACGCTAACCGGCAAGACCATCACCCTCGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAAGAAGGAATTCCTCCGGACCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGATGGTCGTACCTTGGCTGACTACAACATCCAGAAAGAGTCGACTTTGCATCTTGTTCTGAGGCTTAGGGGAGGTATCATTGAGCCTTCATTGATGATGTTGGCTCGTAAGTATAACCAAGACAAAATGATTTGTCGCAAGTGTTATGCTCGTCTCCACCCAAGAGCTGTGAACTGCAGGAAGAAGAAGTGTGGCCATAGCAACCAGTTGAGGCCAAAGAAGAAGATCAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0005840 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0015934 GO:0016567 GO:0019538 GO:0022625 GO:0022626 GO:0031974 GO:0031981 GO:0032446 GO:0032991 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044391 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0070013 GO:0070647 GO:0071704 GO:1901564 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

128

Amino Acids

14.73

Weight (kDa)

9.94

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	8.9e-18	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1.1e-32	Ubiquitin family
Ribosomal_L40e	PF01020	78 - 127	2.2e-31	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	194
AccIII	TCCGGA	1 cut(s)	112
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	1 cut(s)	105
AfaI	GTAC	1 cut(s)	163
AgsI	TTSAA	1 cut(s)	152
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	148, 320
AluI	AGCT	2 cut(s)	148, 320
Alw26I	GTCTC	1 cut(s)	311
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
Aor13HI	TCCGGA	1 cut(s)	112
AoxI	GGCC	3 cut(s)	81, 346, 365
ApoI	RAATTY	1 cut(s)	105
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	115
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	348
BccI	CCATC	3 cut(s)	44, 74, 149
BciT130I	CCWGG	1 cut(s)	92
BcoDI	GTCTC	1 cut(s)	311
BfmI	CTRYAG	1 cut(s)	328
Bme1390I	CCNGG	1 cut(s)	92
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	115
BmrFI	CCNGG	1 cut(s)	92
BmsI	GCATC	1 cut(s)	211
Bpu10I	CCTNAGC	1 cut(s)	218
BsaJI	CCNNGG	1 cut(s)	165
BsaWI	WCCGGW	1 cut(s)	112
Bse118I	RCCGGY	1 cut(s)	26
Bse1I	ACTGG	1 cut(s)	358
BseAI	TCCGGA	1 cut(s)	112
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	180
BseMII	CTCAG	1 cut(s)	203
BseNI	ACTGG	1 cut(s)	358
BshFI	GGCC	3 cut(s)	83, 348, 367
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	27, 113, 138
BsmAI	GTCTC	1 cut(s)	311
BsmBI	CGTCTC	1 cut(s)	311
BsnI	GGCC	3 cut(s)	83, 348, 367
BsoBI	CYCGRG	1 cut(s)	44
Bsp13I	TCCGGA	1 cut(s)	112
Bsp143I	GATC	3 cut(s)	87, 129, 378
BspANI	GGCC	3 cut(s)	83, 348, 367
BspCNI	CTCAG	1 cut(s)	204
BspEI	TCCGGA	1 cut(s)	112
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	26
BsrI	ACTGG	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	26
BssECI	CCNNGG	1 cut(s)	165
BssMI	GATC	3 cut(s)	87, 129, 378
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	1 cut(s)	92
BstDEI	CTNAG	2 cut(s)	212, 218
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	3 cut(s)	90, 132, 381
BstMAI	GTCTC	1 cut(s)	311
BstMBI	GATC	3 cut(s)	87, 129, 378
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	1 cut(s)	90
BstSFI	CTRYAG	1 cut(s)	328
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BsuRI	GGCC	3 cut(s)	83, 348, 367
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cfr10I	RCCGGY	1 cut(s)	26
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	1 cut(s)	162
CviJI	RGCY	9 cut(s)	83, 148, 170, 217, 238, 257, 320, 348, 367
CviKI_1	RGCY	9 cut(s)	83, 148, 170, 217, 238, 257, 320, 348, 367
CviQI	GTAC	1 cut(s)	162
DdeI	CTNAG	2 cut(s)	212, 218
DpnI	GATC	3 cut(s)	89, 131, 380
DpnII	GATC	3 cut(s)	87, 129, 378
EaeI	YGGCCR	1 cut(s)	346
Eco130I	CCWWGG	1 cut(s)	165
Eco47I	GGWCC	1 cut(s)	115
Eco88I	CYCGRG	1 cut(s)	44
EcoRI	GAATTC	1 cut(s)	105
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	165
ErhI	CCWWGG	1 cut(s)	165
Esp3I	CGTCTC	1 cut(s)	311
FaiI	YATR	3 cut(s)	267, 300, 351
FblI	GTMKAC	1 cut(s)	194
FokI	GGATG	1 cut(s)	167
HaeIII	GGCC	3 cut(s)	83, 348, 367
HapII	CCGG	3 cut(s)	27, 113, 138
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	1 cut(s)	191
HpaII	CCGG	3 cut(s)	27, 113, 138
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	195, 325
Hpy188I	TCNGA	1 cut(s)	213
Hpy188III	TCNNGA	4 cut(s)	13, 52, 113, 184
Hpy8I	GTNNAC	2 cut(s)	195, 325
HpyAV	CCTTC	2 cut(s)	95, 249
HpyCH4V	TGCA	3 cut(s)	4, 202, 330
HpyF3I	CTNAG	2 cut(s)	212, 218
Kpn2I	TCCGGA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	87, 129, 378
LpnPI	CCDG	9 cut(s)	40, 77, 104, 126, 131, 151, 197, 316, 371
LweI	GCATC	1 cut(s)	211
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	3 cut(s)	89, 131, 380
MboI	GATC	3 cut(s)	87, 129, 378
MboII	GAAGA	5 cut(s)	124, 164, 346, 349, 385
MflI	RGATCY	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	105
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	1 cut(s)	200
MnlI	CCTC	7 cut(s)	40, 53, 117, 120, 207, 218, 357
Mox20I	TGGCCA	1 cut(s)	348
MroI	TCCGGA	1 cut(s)	112
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	348
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	3 cut(s)	27, 113, 138
MspR9I	CCNGG	1 cut(s)	92
MvaI	CCWGG	1 cut(s)	92
NdeII	GATC	3 cut(s)	87, 129, 378
NmuCI	GTSAC	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	44
PdmI	GAANNNNTTC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	90
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspPI	GGNCC	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	163
RsaNI	GTAC	1 cut(s)	162
SalI	GTCGAC	1 cut(s)	193
Sau3AI	GATC	3 cut(s)	87, 129, 378
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	1 cut(s)	200
ScrFI	CCNGG	1 cut(s)	92
SetI	ASST	6 cut(s)	51, 128, 150, 167, 229, 322
SfaNI	GCATC	1 cut(s)	211
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	105
StyD4I	CCNGG	1 cut(s)	90
StyI	CCWWGG	1 cut(s)	165
TaqI	TCGA	4 cut(s)	45, 51, 69, 194
TasI	AATT	1 cut(s)	105
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	59
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	231
TspRI	CASTG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	105
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	105

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.