Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr14

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

2071701 .. 2073312

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom14g02690.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGCAGATTTTCGTGAAAACCCTAACCGGGAAGACCATCACCCTCGAGGTCGAGAGCAGCGACACCATCGACAATGTCAAGGCCAAGATCCAGGACAAGGAGGGCATTCCGCCGGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTCGAAGACGGCCGCACCCTAGCTGACTACAACATCCAGAAAGAGTCGACTCTTCATCTCGTGCTGAGGCTCCGCGGAGGGATTATCGAACCTTCTCTCATGGCTTTGGCTCGCAAGTACAATCAGGAGAAGATGATTTGCAGAAAGTGCTATGCTCGTCTTCATCCAAGGGCAGTGAACTGCAGGAAGAAGAAGTGCGGCCACAGCAATCAGTTGAGGCCGAAGAAGAAGATCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 ko03320 map03010 map03320

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

129

Amino Acids

14.69

Weight (kDa)

9.94

Isoelectric Point (pI)

33.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AbsI	CCTCGAGG	1 cut(s)	44
AccI	GTMKAC	1 cut(s)	194
AccII	CGCG	1 cut(s)	222
AciI	CCGC	5 cut(s)	110, 160, 220, 222, 345
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	2 cut(s)	157, 346
AfaI	GTAC	1 cut(s)	266
AfiI	CCNNNNNNNGG	2 cut(s)	27, 97
AjnI	CCWGG	1 cut(s)	90
AluBI	AGCT	2 cut(s)	148, 170
AluI	AGCT	2 cut(s)	148, 170
AlwI	GGATC	1 cut(s)	82
Ama87I	CYCGRG	1 cut(s)	44
AoxI	GGCC	4 cut(s)	81, 157, 346, 365
ApeKI	GCWGC	3 cut(s)	57, 121, 145
AspLEI	GCGC	1 cut(s)	126
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	28
AsuHPI	GGTGA	1 cut(s)	31
AvaI	CYCGRG	1 cut(s)	44
AvaII	GGWCC	1 cut(s)	115
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	3 cut(s)	38, 159, 299
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	69, 133, 157
BccI	CCATC	2 cut(s)	44, 74
BceAI	ACGGC	1 cut(s)	172
BcgI	CGANNNNNNTGC	2 cut(s)	130, 164
BciT130I	CCWGG	1 cut(s)	92
BcnI	CCSGG	1 cut(s)	28
BfaI	CTAG	1 cut(s)	167
BfmI	CTRYAG	1 cut(s)	328
BfoI	RGCGCY	1 cut(s)	127
BisI	GCNGC	5 cut(s)	58, 122, 146, 160, 346
BlsI	GCNGC	5 cut(s)	59, 123, 147, 161, 347
Bme1390I	CCNGG	2 cut(s)	28, 92
Bme18I	GGWCC	1 cut(s)	115
BmeT110I	CYCGRG	1 cut(s)	44
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	28, 92
BpiI	GAAGAC	3 cut(s)	38, 159, 299
Bpu10I	CCTNAGC	1 cut(s)	212
BpuMI	CCSGG	1 cut(s)	28
BsaJI	CCNNGG	2 cut(s)	220, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	27, 97
Bse118I	RCCGGY	1 cut(s)	137
BseBI	CCWGG	1 cut(s)	92
BseDI	CCNNGG	2 cut(s)	220, 314
BseGI	GGATG	2 cut(s)	180, 310
BseLI	CCNNNNNNNGG	2 cut(s)	27, 97
BseMII	CTCAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	69, 133, 157
Bsh1236I	CGCG	1 cut(s)	222
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	4 cut(s)	83, 159, 348, 367
BsiEI	CGRYCG	1 cut(s)	160
BsiHKCI	CYCGRG	1 cut(s)	44
BsiSI	CCGG	3 cut(s)	27, 113, 138
BslI	CCNNNNNNNGG	2 cut(s)	27, 97
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	4 cut(s)	83, 159, 348, 367
BsoBI	CYCGRG	1 cut(s)	44
Bsp143I	GATC	2 cut(s)	87, 378
BspACI	CCGC	5 cut(s)	110, 160, 220, 222, 345
BspANI	GGCC	4 cut(s)	83, 159, 348, 367
BspCNI	CTCAG	1 cut(s)	204
BspFNI	CGCG	1 cut(s)	222
BspLI	GGNNCC	1 cut(s)	218
BspMAI	CTGCAG	1 cut(s)	332
BspPI	GGATC	1 cut(s)	82
BsrFI	RCCGGY	1 cut(s)	137
BssAI	RCCGGY	1 cut(s)	137
BssECI	CCNNGG	2 cut(s)	220, 314
BssMI	GATC	2 cut(s)	87, 378
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	1 cut(s)	314
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	1 cut(s)	92
Bst6I	CTCTTC	1 cut(s)	204
BstAPI	GCANNNNNTGC	1 cut(s)	294
BstC8I	GCNNGC	3 cut(s)	139, 143, 259
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	2 cut(s)	180, 310
BstFNI	CGCG	1 cut(s)	222
BstH2I	RGCGCY	1 cut(s)	127
BstHHI	GCGC	1 cut(s)	126
BstKTI	GATC	2 cut(s)	90, 381
BstMBI	GATC	2 cut(s)	87, 378
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	3 cut(s)	118, 294, 351
BstNI	CCWGG	1 cut(s)	92
BstSCI	CCNGG	2 cut(s)	26, 90
BstSFI	CTRYAG	1 cut(s)	328
BstUI	CGCG	1 cut(s)	222
BstV1I	GCAGC	3 cut(s)	69, 133, 157
BstV2I	GAAGAC	3 cut(s)	38, 159, 299
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	4 cut(s)	83, 159, 348, 367
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	2 cut(s)	180, 310
BtsI	GCAGTG	1 cut(s)	327
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	3 cut(s)	139, 143, 259
CfoI	GCGC	1 cut(s)	126
Cfr10I	RCCGGY	1 cut(s)	137
Cfr13I	GGNCC	1 cut(s)	115
Cfr42I	CCGCGG	1 cut(s)	223
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	1 cut(s)	247
CviJI	RGCY	9 cut(s)	83, 148, 159, 170, 217, 251, 257, 348, 367
CviKI_1	RGCY	9 cut(s)	83, 148, 159, 170, 217, 251, 257, 348, 367
CviQI	GTAC	1 cut(s)	265
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	2 cut(s)	89, 380
DpnII	GATC	2 cut(s)	87, 378
EaeI	YGGCCR	2 cut(s)	157, 346
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EciI	GGCGGA	1 cut(s)	99
EclXI	CGGCCG	1 cut(s)	157
Eco130I	CCWWGG	1 cut(s)	314
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	157
Eco88I	CYCGRG	1 cut(s)	44
EcoRII	CCWGG	1 cut(s)	90
EcoT14I	CCWWGG	1 cut(s)	314
ErhI	CCWWGG	1 cut(s)	314
FaeI	CATG	1 cut(s)	250
FaiI	YATR	2 cut(s)	248, 300
FatI	CATG	1 cut(s)	246
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	5 cut(s)	58, 122, 146, 160, 346
FokI	GGATG	2 cut(s)	167, 297
Fsp4HI	GCNGC	5 cut(s)	58, 122, 146, 160, 346
FspBI	CTAG	1 cut(s)	167
GlaI	GCGC	1 cut(s)	125
GluI	GCNGC	5 cut(s)	58, 122, 146, 160, 346
HaeII	RGCGCY	1 cut(s)	127
HaeIII	GGCC	4 cut(s)	83, 159, 348, 367
HapII	CCGG	3 cut(s)	27, 113, 138
HhaI	GCGC	1 cut(s)	126
Hin1II	CATG	1 cut(s)	250
Hin6I	GCGC	1 cut(s)	124
HinP1I	GCGC	1 cut(s)	124
HincII	GTYRAC	1 cut(s)	195
HindII	GTYRAC	1 cut(s)	195
HinfI	GANTC	2 cut(s)	191, 196
HpaII	CCGG	3 cut(s)	27, 113, 138
HphI	GGTGA	1 cut(s)	31
Hpy166II	GTNNAC	2 cut(s)	195, 325
Hpy188III	TCNNGA	4 cut(s)	13, 52, 184, 272
Hpy8I	GTNNAC	2 cut(s)	195, 325
HpyAV	CCTTC	1 cut(s)	249
HpyCH4V	TGCA	3 cut(s)	4, 288, 330
HpyF10VI	GCNNNNNNNGC	3 cut(s)	118, 294, 351
HpyF3I	CTNAG	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	250
HspAI	GCGC	1 cut(s)	124
KroI	GCCGGC	1 cut(s)	137
KroNI	GCCGGC	1 cut(s)	139
KspI	CCGCGG	1 cut(s)	223
Kzo9I	GATC	2 cut(s)	87, 378
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	9 cut(s)	40, 77, 104, 126, 131, 151, 197, 257, 316
Lsp1109I	GCAGC	3 cut(s)	69, 133, 157
MaeI	CTAG	1 cut(s)	167
MalI	GATC	2 cut(s)	89, 380
MboI	GATC	2 cut(s)	87, 378
MflI	RGATCY	1 cut(s)	87
MlyI	GAGTC	2 cut(s)	190, 200
MnlI	CCTC	7 cut(s)	40, 53, 94, 137, 207, 218, 357
MroNI	GCCGGC	1 cut(s)	137
MspA1I	CMGCKG	1 cut(s)	222
MspI	CCGG	3 cut(s)	27, 113, 138
MspR9I	CCNGG	2 cut(s)	28, 92
Mva1269I	GAATGC	1 cut(s)	105
MvaI	CCWGG	1 cut(s)	92
MvnI	CGCG	1 cut(s)	222
MwoI	GCNNNNNNNGC	3 cut(s)	118, 294, 351
NaeI	GCCGGC	1 cut(s)	139
NciI	CCSGG	1 cut(s)	28
NdeII	GATC	2 cut(s)	87, 378
NgoMIV	GCCGGC	1 cut(s)	137
NlaIII	CATG	1 cut(s)	250
NlaIV	GGNNCC	1 cut(s)	218
PaeR7I	CTCGAG	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	57
PctI	GAATGC	1 cut(s)	105
PdiI	GCCGGC	1 cut(s)	139
PflFI	GACNNNGTC	1 cut(s)	74
PfoI	TCCNGGA	1 cut(s)	90
PkrI	GCNGC	5 cut(s)	59, 123, 147, 161, 347
PleI	GAGTC	2 cut(s)	190, 199
PpsI	GAGTC	2 cut(s)	190, 199
Psp6I	CCWGG	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	90
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	115
PspXI	VCTCGAGB	1 cut(s)	44
PstI	CTGCAG	1 cut(s)	332
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
SacII	CCGCGG	1 cut(s)	223
SalI	GTCGAC	1 cut(s)	193
SatI	GCNGC	5 cut(s)	58, 122, 146, 160, 346
Sau3AI	GATC	2 cut(s)	87, 378
Sau96I	GGNCC	1 cut(s)	115
SchI	GAGTC	2 cut(s)	190, 200
ScrFI	CCNGG	2 cut(s)	28, 92
SetI	ASST	4 cut(s)	51, 150, 172, 241
SfcI	CTRYAG	1 cut(s)	328
Sfr274I	CTCGAG	1 cut(s)	44
Sfr303I	CCGCGG	1 cut(s)	223
SgrBI	CCGCGG	1 cut(s)	223
SinI	GGWCC	1 cut(s)	115
SlaI	CTCGAG	1 cut(s)	44
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
SsiI	CCGC	5 cut(s)	110, 160, 220, 222, 345
SspMI	CTAG	1 cut(s)	167
StyD4I	CCNGG	2 cut(s)	26, 90
StyI	CCWWGG	1 cut(s)	314
TaqI	TCGA	6 cut(s)	45, 51, 69, 150, 194, 234
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	2 cut(s)	162, 348
TscAI	CASTG	1 cut(s)	327
TseI	GCWGC	3 cut(s)	57, 121, 145
TspDTI	ATGAA	2 cut(s)	191, 299
TspRI	CASTG	1 cut(s)	327
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	115
XhoI	CTCGAG	1 cut(s)	44
XmiI	GTMKAC	1 cut(s)	194
XspI	CTAG	1 cut(s)	167

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.