Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

2847321 .. 2850887

Gene Structure 3567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00002380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 426 bp

ATGCAGATTTTCGTGAAAACACTAACGGGGAAGACCATCACTCTTGAGGTCGAGAGCAGTGACACCATCGACAATGTCAAGGCCAAGATCCAAGACAAGGAAGGCATTCCCCCGGACCAGCAGCGTTTGATTTTCGCAGCAAAGCAGCTCGAAGACGGCCGCACCTTGGCCGACTACAACATCCAGAAAGAGTCGACTCTTCATCTGGTGCTGAGGCTCCGTGGAGGTATCATTGAGCCTTCTTTGATGGCCTTGGCTCGCAAGTACAATCAGGAGAAGATGATTTGCAGAAAATGTTATGCTCGTCTGCACCCAAGGGCTGTCAACTCTAGGAAGAAGAAGTGTGGCCACAGCAATCAGGTAAAATTTTATAACTTATTGTTGCGGAGGAAGCAGTACTACTTTAAGACTATGGTCTCGGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

141

Amino Acids

16.34

Weight (kDa)

9.94

Isoelectric Point (pI)

39.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Rad60-SLD	PF11976	1 - 71	6.1e-16	Ubiquitin-2 like Rad60 SUMO-like
ubiquitin	PF00240	3 - 74	1e-30	Ubiquitin family
Ribosomal_L40e	PF01020	78 - 122	1.9e-26	Ribosomal L40e family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	372
AccI	GTMKAC	1 cut(s)	194
AciI	CCGC	2 cut(s)	160, 385
AclWI	GGATC	1 cut(s)	82
AcoI	YGGCCR	3 cut(s)	157, 168, 346
AcsI	RAATTY	1 cut(s)	365
AfaI	GTAC	2 cut(s)	266, 398
AfiI	CCNNNNNNNGG	2 cut(s)	97, 166
AluBI	AGCT	1 cut(s)	148
AluI	AGCT	1 cut(s)	148
Alw26I	GTCTC	1 cut(s)	421
AlwI	GGATC	1 cut(s)	82
AoxI	GGCC	5 cut(s)	81, 157, 168, 249, 346
ApeKI	GCWGC	3 cut(s)	121, 137, 145
ApoI	RAATTY	1 cut(s)	365
Asp700I	GAANNNNTTC	1 cut(s)	105
AspS9I	GGNCC	1 cut(s)	115
AsuC2I	CCSGG	1 cut(s)	113
AvaII	GGWCC	1 cut(s)	115
BalI	TGGCCA	1 cut(s)	348
BarI	GAAGNNNNNNTAC	2 cut(s)	383, 415
BbsI	GAAGAC	2 cut(s)	38, 159
BbvCI	CCTCAGC	1 cut(s)	212
BbvI	GCAGC	3 cut(s)	133, 149, 157
BccI	CCATC	3 cut(s)	44, 74, 241
BceAI	ACGGC	1 cut(s)	172
BcnI	CCSGG	1 cut(s)	113
BcoDI	GTCTC	1 cut(s)	421
BfaI	CTAG	1 cut(s)	330
BisI	GCNGC	4 cut(s)	122, 138, 146, 160
BlsI	GCNGC	4 cut(s)	123, 139, 147, 161
BmcAI	AGTACT	1 cut(s)	398
Bme1390I	CCNGG	1 cut(s)	113
Bme18I	GGWCC	1 cut(s)	115
BmgT120I	GGNCC	1 cut(s)	115
BmiI	GGNNCC	1 cut(s)	218
BmrFI	CCNGG	1 cut(s)	113
BoxI	GACNNNNGTC	1 cut(s)	413
BpiI	GAAGAC	2 cut(s)	38, 159
Bpu10I	CCTNAGC	1 cut(s)	212
BpuEI	CTTGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	421
BsaJI	CCNNGG	5 cut(s)	111, 165, 220, 252, 314
Bsc4I	CCNNNNNNNGG	2 cut(s)	97, 166
BseDI	CCNNGG	5 cut(s)	111, 165, 220, 252, 314
BseGI	GGATG	1 cut(s)	180
BseLI	CCNNNNNNNGG	2 cut(s)	97, 166
BseMII	CTCAG	1 cut(s)	203
BseX3I	CGGCCG	1 cut(s)	157
BseXI	GCAGC	3 cut(s)	133, 149, 157
BsgI	GTGCAG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	160
BshFI	GGCC	5 cut(s)	83, 159, 170, 251, 348
BsiEI	CGRYCG	1 cut(s)	160
BsiSI	CCGG	1 cut(s)	113
BslI	CCNNNNNNNGG	2 cut(s)	97, 166
BsmAI	GTCTC	1 cut(s)	421
BsmI	GAATGC	1 cut(s)	105
BsnI	GGCC	5 cut(s)	83, 159, 170, 251, 348
Bso31I	GGTCTC	1 cut(s)	421
Bsp143I	GATC	1 cut(s)	87
BspACI	CCGC	2 cut(s)	160, 385
BspANI	GGCC	5 cut(s)	83, 159, 170, 251, 348
BspCNI	CTCAG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	82
BspTNI	GGTCTC	1 cut(s)	421
BssECI	CCNNGG	5 cut(s)	111, 165, 220, 252, 314
BssMI	GATC	1 cut(s)	87
BssT1I	CCWWGG	3 cut(s)	165, 252, 314
Bst6I	CTCTTC	1 cut(s)	204
BstC8I	GCNNGC	1 cut(s)	259
BstDEI	CTNAG	1 cut(s)	212
BstDSI	CCRYGG	1 cut(s)	220
BstF5I	GGATG	1 cut(s)	180
BstKTI	GATC	1 cut(s)	90
BstMAI	GTCTC	1 cut(s)	421
BstMBI	GATC	1 cut(s)	87
BstMCI	CGRYCG	1 cut(s)	160
BstMWI	GCNNNNNNNGC	1 cut(s)	391
BstPAI	GACNNNNGTC	1 cut(s)	413
BstSCI	CCNGG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	133, 149, 157
BstV2I	GAAGAC	2 cut(s)	38, 159
BstX2I	RGATCY	1 cut(s)	87
BstYI	RGATCY	1 cut(s)	87
BstZI	CGGCCG	1 cut(s)	157
BsuRI	GGCC	5 cut(s)	83, 159, 170, 251, 348
BtgI	CCRYGG	1 cut(s)	220
BtsCI	GGATG	1 cut(s)	180
BtsI	GCAGTG	1 cut(s)	64
BtsIMutI	CAGTG	1 cut(s)	64
Cac8I	GCNNGC	1 cut(s)	259
Cfr13I	GGNCC	1 cut(s)	115
Csp6I	GTAC	2 cut(s)	265, 397
CviQI	GTAC	2 cut(s)	265, 397
DdeI	CTNAG	1 cut(s)	212
DpnI	GATC	1 cut(s)	89
DpnII	GATC	1 cut(s)	87
EaeI	YGGCCR	3 cut(s)	157, 168, 346
EagI	CGGCCG	1 cut(s)	157
Eam1104I	CTCTTC	1 cut(s)	204
EarI	CTCTTC	1 cut(s)	204
EclXI	CGGCCG	1 cut(s)	157
Eco130I	CCWWGG	3 cut(s)	165, 252, 314
Eco31I	GGTCTC	1 cut(s)	421
Eco47I	GGWCC	1 cut(s)	115
Eco52I	CGGCCG	1 cut(s)	157
EcoT14I	CCWWGG	3 cut(s)	165, 252, 314
ErhI	CCWWGG	3 cut(s)	165, 252, 314
FaiI	YATR	4 cut(s)	300, 372, 413, 424
FblI	GTMKAC	1 cut(s)	194
Fnu4HI	GCNGC	4 cut(s)	122, 138, 146, 160
FokI	GGATG	1 cut(s)	167
Fsp4HI	GCNGC	4 cut(s)	122, 138, 146, 160
FspBI	CTAG	1 cut(s)	330
GluI	GCNGC	4 cut(s)	122, 138, 146, 160
HaeIII	GGCC	5 cut(s)	83, 159, 170, 251, 348
HapII	CCGG	1 cut(s)	113
HincII	GTYRAC	2 cut(s)	195, 325
HindII	GTYRAC	2 cut(s)	195, 325
HinfI	GANTC	2 cut(s)	191, 196
HpaII	CCGG	1 cut(s)	113
Hpy166II	GTNNAC	2 cut(s)	195, 325
Hpy188III	TCNNGA	5 cut(s)	13, 44, 52, 184, 272
Hpy8I	GTNNAC	2 cut(s)	195, 325
HpyAV	CCTTC	2 cut(s)	95, 249
HpyCH4V	TGCA	3 cut(s)	4, 288, 310
HpyF10VI	GCNNNNNNNGC	1 cut(s)	391
HpyF3I	CTNAG	1 cut(s)	212
Kzo9I	GATC	1 cut(s)	87
LmnI	GCTCC	1 cut(s)	222
LpnPI	CCDG	6 cut(s)	126, 131, 191, 197, 257, 344
Lsp1109I	GCAGC	3 cut(s)	133, 149, 157
MaeI	CTAG	1 cut(s)	330
MaeIII	GTNAC	1 cut(s)	59
MalI	GATC	1 cut(s)	89
MboI	GATC	1 cut(s)	87
MboII	GAAGA	6 cut(s)	43, 164, 191, 289, 346, 349
MflI	RGATCY	1 cut(s)	87
MlsI	TGGCCA	1 cut(s)	348
MluCI	AATT	1 cut(s)	365
MluNI	TGGCCA	1 cut(s)	348
MlyI	GAGTC	2 cut(s)	190, 200
MnlI	CCTC	4 cut(s)	40, 207, 218, 381
Mox20I	TGGCCA	1 cut(s)	348
MroXI	GAANNNNTTC	1 cut(s)	105
MscI	TGGCCA	1 cut(s)	348
MseI	TTAA	1 cut(s)	405
Msp20I	TGGCCA	1 cut(s)	348
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	105
MwoI	GCNNNNNNNGC	1 cut(s)	391
NciI	CCSGG	1 cut(s)	113
NdeII	GATC	1 cut(s)	87
NlaIV	GGNNCC	1 cut(s)	218
NmeAIII	GCCGAG	1 cut(s)	398
NmuCI	GTSAC	1 cut(s)	59
PctI	GAATGC	1 cut(s)	105
PdmI	GAANNNNTTC	1 cut(s)	105
PflFI	GACNNNGTC	1 cut(s)	74
PkrI	GCNGC	4 cut(s)	123, 139, 147, 161
PleI	GAGTC	2 cut(s)	190, 199
PpsI	GAGTC	2 cut(s)	190, 199
PshAI	GACNNNNGTC	1 cut(s)	413
PsiI	TTATAA	1 cut(s)	372
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	115
PsuI	RGATCY	1 cut(s)	87
PsyI	GACNNNGTC	1 cut(s)	74
RsaI	GTAC	2 cut(s)	266, 398
RsaNI	GTAC	2 cut(s)	265, 397
SalI	GTCGAC	1 cut(s)	193
SaqAI	TTAA	1 cut(s)	405
SatI	GCNGC	4 cut(s)	122, 138, 146, 160
Sau3AI	GATC	1 cut(s)	87
Sau96I	GGNCC	1 cut(s)	115
ScaI	AGTACT	1 cut(s)	398
SchI	GAGTC	2 cut(s)	190, 200
ScrFI	CCNGG	1 cut(s)	113
SetI	ASST	5 cut(s)	51, 150, 167, 229, 363
SinI	GGWCC	1 cut(s)	115
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	365
SsiI	CCGC	2 cut(s)	160, 385
SspMI	CTAG	1 cut(s)	330
StyD4I	CCNGG	1 cut(s)	111
StyI	CCWWGG	3 cut(s)	165, 252, 314
TaqI	TCGA	4 cut(s)	51, 69, 150, 194
TasI	AATT	1 cut(s)	365
TatI	WGTACW	2 cut(s)	264, 396
TauI	GCSGC	1 cut(s)	162
Tru1I	TTAA	1 cut(s)	405
Tru9I	TTAA	1 cut(s)	405
TscAI	CASTG	1 cut(s)	64
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	121, 137, 145
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	1 cut(s)	191
TspGWI	ACGGA	1 cut(s)	209
TspRI	CASTG	1 cut(s)	64
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	1 cut(s)	115
XapI	RAATTY	1 cut(s)	365
XmiI	GTMKAC	1 cut(s)	194
XmnI	GAANNNNTTC	1 cut(s)	105
XspI	CTAG	1 cut(s)	330
ZrmI	AGTACT	1 cut(s)	398

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.