Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0009916.1

Orthogroup ID

OG0002166

Physical Location & Seq

Genomic Coordinates Reverse (-)

18229 .. 21042

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0009916.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgatgccggaagaggtggtggggatgggtctccaagaatatgatgtggtggtagtcacctccttctccttgctccaagctcttgatattgaagattctcacaaccatggtcctcctttgccagagaaaggatcctccataagtggcggctcgtcggaaaagtcgatttgtaattttcttccaatctccatgtcttcttttgctatcttcaaatctccgcatttcaagcctcaaatgccgtacacggagacagagagcaagagagagacagagattgagaagattcagatctttgtgaaaacggtaaccgggaagaccatcacccttgaggttgaatctagcgacactatcgacaacgggcgtcaaggccaagatccaggagaaagaaagtatcccccggaccagcagatgctcattttcatcgaaaagcagcttaaggatggtcgtactcctgctaattacaacattaagaaagaatcaaccctgcatttggttctgaggcttcatgatggtattatcgagccttctctcatggcattgactagaaagtataaccaagagaagatgatctaccgcaagtgttatgcactccttcattgcggtgttgtcaactgtaggaagaagtgtggacacaacaaccagctagttgaggcgaaagcagaagatcaagtagacattgattgcgttgggggaatgccatgtctttttacatcattggcttctgcatttgatcccgttcaattaaactaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L40e ubiquitin

Protein Analysis

249

Amino Acids

27.87

Weight (kDa)

5.68

Isoelectric Point (pI)

54.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002166)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G36170 AT3G52590
fragaria_vesca	FvH4_6g19302 FvH4_6g19302 FvH4_7g32551
malus_domestica	MD01G1226400.v1.1 MD07G1296800.v1.1 MD12G1028600.v1.1 MD14G1028800.v1.1
prunus_persica	Prupe.2G316400_v2.0.a1 Prupe.7G102800_v2.0.a1
pyrus_communis	pycom01g23500 pycom07g26950 pycom12g02740 pycom14g02690
rosa_chinensis	RchiOBHm_Chr1g0336321 RchiOBHm_Chr1g0382401 RchiOBHm_Chr2g0129851 RchiOBHm_Chr2g0148571 RchiOBHm_Chr2g0162391 RchiOBHm_Chr3g0474431 RchiOBHm_Chr3g0474471 RchiOBHm_Chr3g0485451 RchiOBHm_Chr4g0402971
rosa_multiflora	Rmu_sc0000048.1_g000015 Rmu_sc0009916.1_g000009
rosa_roxburghii	Rroxscaffold_1G00002380 Rroxscaffold_4G00278130
rosa_rugosa	Rorug01G0434100 Rorug03G0140900
rosa_samantha	Rh1AG458800 Rh1BG415100 Rh1CG429200 Rh1DG447200 Rh2BG576000 Rh3AG191600 Rh3AG267800 Rh3BG221100 Rh3BG221300 Rh4CG124000
rosa_wichuraiana	Rw1G041220 Rw3G017490 Rw6G010860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	672
AciI	CCGC	4 cut(s)	147, 218, 574, 600
AclWI	GGATC	4 cut(s)	126, 139, 368, 725
AcyI	GRCGYC	1 cut(s)	361
AfaI	GTAC	2 cut(s)	242, 448
AfiI	CCNNNNNNNGG	2 cut(s)	128, 490
AflII	CTTAAG	1 cut(s)	434
AgsI	TTSAA	5 cut(s)	92, 211, 226, 335, 740
AjnI	CCWGG	1 cut(s)	376
AluBI	AGCT	3 cut(s)	80, 433, 643
AluI	AGCT	3 cut(s)	80, 433, 643
Alw26I	GTCTC	3 cut(s)	35, 242, 260
AlwI	GGATC	4 cut(s)	126, 139, 368, 725
AoxI	GGCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	430
AspS9I	GGNCC	2 cut(s)	110, 400
AsuC2I	CCSGG	2 cut(s)	310, 398
AsuHPI	GGTGA	2 cut(s)	49, 313
AvaII	GGWCC	2 cut(s)	110, 400
BamHI	GGATCC	1 cut(s)	131
BarI	GAAGNNNNNNTAC	2 cut(s)	554, 586
BbsI	GAAGAC	2 cut(s)	186, 320
BbvI	GCAGC	1 cut(s)	442
BccI	CCATC	4 cut(s)	19, 326, 434, 503
BceAI	ACGGC	1 cut(s)	223
BciT130I	CCWGG	1 cut(s)	378
BciVI	GTATCC	1 cut(s)	402
BcnI	CCSGG	2 cut(s)	310, 398
BcoDI	GTCTC	3 cut(s)	35, 242, 260
BfaI	CTAG	3 cut(s)	339, 543, 644
BfmI	CTRYAG	1 cut(s)	613
BfrI	CTTAAG	1 cut(s)	434
BfuI	GTATCC	1 cut(s)	402
BglII	AGATCT	1 cut(s)	288
BisI	GCNGC	2 cut(s)	148, 431
BlsI	GCNGC	2 cut(s)	149, 432
Bme1390I	CCNGG	3 cut(s)	310, 378, 398
Bme18I	GGWCC	2 cut(s)	110, 400
BmgT120I	GGNCC	2 cut(s)	110, 400
BmiI	GGNNCC	1 cut(s)	133
BmrFI	CCNGG	3 cut(s)	310, 378, 398
BmsI	GCATC	1 cut(s)	399
BpiI	GAAGAC	2 cut(s)	186, 320
BpuEI	CTTGAG	1 cut(s)	347
BpuMI	CCSGG	2 cut(s)	310, 398
BsaBI	GATNNNNATC	1 cut(s)	287
BsaHI	GRCGYC	1 cut(s)	361
BsaI	GGTCTC	1 cut(s)	35
BsaJI	CCNNGG	2 cut(s)	106, 396
Bsc4I	CCNNNNNNNGG	2 cut(s)	128, 490
Bse3DI	GCAATG	1 cut(s)	595
Bse8I	GATNNNNATC	1 cut(s)	287
BseBI	CCWGG	1 cut(s)	378
BseDI	CCNNGG	2 cut(s)	106, 396
BseGI	GGATG	2 cut(s)	30, 445
BseJI	GATNNNNATC	1 cut(s)	287
BseLI	CCNNNNNNNGG	2 cut(s)	128, 490
BseMI	GCAATG	1 cut(s)	595
BseMII	CTCAG	1 cut(s)	488
BseXI	GCAGC	1 cut(s)	442
BshFI	GGCC	1 cut(s)	369
BsiSI	CCGG	3 cut(s)	8, 309, 398
BslI	CCNNNNNNNGG	2 cut(s)	128, 490
BsmAI	GTCTC	3 cut(s)	35, 242, 260
BsmI	GAATGC	1 cut(s)	699
BsnI	GGCC	1 cut(s)	369
Bso31I	GGTCTC	1 cut(s)	35
Bsp143I	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
Bsp19I	CCATGG	1 cut(s)	106
BspACI	CCGC	4 cut(s)	147, 218, 574, 600
BspANI	GGCC	1 cut(s)	369
BspCNI	CTCAG	1 cut(s)	489
BspHI	TCATGA	1 cut(s)	505
BspLI	GGNNCC	1 cut(s)	133
BspPI	GGATC	4 cut(s)	126, 139, 368, 725
BspTI	CTTAAG	1 cut(s)	434
BspTNI	GGTCTC	1 cut(s)	35
BsrDI	GCAATG	1 cut(s)	595
BssECI	CCNNGG	2 cut(s)	106, 396
BssMI	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
BssNI	GRCGYC	1 cut(s)	361
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	378
Bst4CI	ACNGT	2 cut(s)	304, 614
Bst6I	CTCTTC	1 cut(s)	6
BstACI	GRCGYC	1 cut(s)	361
BstAFI	CTTAAG	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	497
BstDSI	CCRYGG	1 cut(s)	106
BstEII	GGTNACC	1 cut(s)	304
BstF5I	GGATG	2 cut(s)	30, 445
BstKTI	GATC	6 cut(s)	134, 291, 376, 570, 667, 733
BstMAI	GTCTC	3 cut(s)	35, 242, 260
BstMBI	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
BstMWI	GCNNNNNNNGC	2 cut(s)	226, 235
BstNI	CCWGG	1 cut(s)	378
BstPI	GGTNACC	1 cut(s)	304
BstSCI	CCNGG	3 cut(s)	308, 376, 396
BstSFI	CTRYAG	1 cut(s)	613
BstV1I	GCAGC	1 cut(s)	442
BstV2I	GAAGAC	2 cut(s)	186, 320
BstX2I	RGATCY	3 cut(s)	131, 288, 373
BstYI	RGATCY	3 cut(s)	131, 288, 373
BsuI	GTATCC	1 cut(s)	402
BsuRI	GGCC	1 cut(s)	369
BtgI	CCRYGG	1 cut(s)	106
BtsCI	GGATG	2 cut(s)	30, 445
CciI	TCATGA	1 cut(s)	505
Cfr13I	GGNCC	2 cut(s)	110, 400
CseI	GACGC	1 cut(s)	350
Csp6I	GTAC	2 cut(s)	241, 447
CviAII	CATG	5 cut(s)	107, 190, 506, 532, 699
CviJI	RGCY	9 cut(s)	80, 150, 229, 369, 433, 502, 523, 643, 719
CviKI_1	RGCY	9 cut(s)	80, 150, 229, 369, 433, 502, 523, 643, 719
CviQI	GTAC	2 cut(s)	241, 447
DdeI	CTNAG	1 cut(s)	497
DpnI	GATC	6 cut(s)	133, 290, 375, 569, 666, 732
DpnII	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
Eam1104I	CTCTTC	1 cut(s)	6
EarI	CTCTTC	1 cut(s)	6
Eco130I	CCWWGG	1 cut(s)	106
Eco31I	GGTCTC	1 cut(s)	35
Eco47I	GGWCC	2 cut(s)	110, 400
Eco91I	GGTNACC	1 cut(s)	304
EcoO65I	GGTNACC	1 cut(s)	304
EcoRII	CCWGG	1 cut(s)	376
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	5 cut(s)	110, 193, 509, 535, 702
FaiI	YATR	9 cut(s)	42, 108, 140, 191, 507, 533, 552, 585, 700
FatI	CATG	5 cut(s)	106, 189, 505, 531, 698
FblI	GTMKAC	1 cut(s)	672
Fnu4HI	GCNGC	2 cut(s)	148, 431
FokI	GGATG	2 cut(s)	37, 452
Fsp4HI	GCNGC	2 cut(s)	148, 431
FspBI	CTAG	3 cut(s)	339, 543, 644
GluI	GCNGC	2 cut(s)	148, 431
HaeIII	GGCC	1 cut(s)	369
HapII	CCGG	3 cut(s)	8, 309, 398
HgaI	GACGC	1 cut(s)	350
Hin1I	GRCGYC	1 cut(s)	361
Hin1II	CATG	5 cut(s)	110, 193, 509, 535, 702
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HinfI	GANTC	4 cut(s)	95, 283, 335, 476
HpaII	CCGG	3 cut(s)	8, 309, 398
HphI	GGTGA	2 cut(s)	49, 313
Hpy166II	GTNNAC	4 cut(s)	243, 610, 629, 673
Hpy188I	TCNGA	3 cut(s)	157, 288, 498
Hpy188III	TCNNGA	2 cut(s)	83, 506
Hpy8I	GTNNAC	4 cut(s)	243, 610, 629, 673
Hpy99I	CGWCG	1 cut(s)	157
HpyAV	CCTTC	3 cut(s)	73, 534, 602
HpyCH4III	ACNGT	2 cut(s)	304, 614
HpyCH4V	TGCA	3 cut(s)	487, 587, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	226, 235
HpyF3I	CTNAG	1 cut(s)	497
Hsp92I	GRCGYC	1 cut(s)	361
Hsp92II	CATG	5 cut(s)	110, 193, 509, 535, 702
Kzo9I	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
LmnI	GCTCC	1 cut(s)	78
Lsp1109I	GCAGC	1 cut(s)	442
LweI	GCATC	1 cut(s)	399
MaeI	CTAG	3 cut(s)	339, 543, 644
MaeIII	GTNAC	2 cut(s)	55, 304
MalI	GATC	6 cut(s)	133, 290, 375, 569, 666, 732
MboI	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
MflI	RGATCY	3 cut(s)	131, 288, 373
MluCI	AATT	3 cut(s)	172, 457, 740
MmeI	TCCRAC	1 cut(s)	135
MnlI	CCTC	8 cut(s)	7, 70, 123, 145, 240, 322, 492, 643
MseI	TTAA	3 cut(s)	435, 468, 743
MslI	CAYNNNNRTG	2 cut(s)	105, 600
MspCI	CTTAAG	1 cut(s)	434
MspI	CCGG	3 cut(s)	8, 309, 398
MspR9I	CCNGG	3 cut(s)	310, 378, 398
Mva1269I	GAATGC	1 cut(s)	699
MvaI	CCWGG	1 cut(s)	378
MwoI	GCNNNNNNNGC	2 cut(s)	226, 235
NciI	CCSGG	2 cut(s)	310, 398
NcoI	CCATGG	1 cut(s)	106
NdeII	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
NlaIII	CATG	5 cut(s)	110, 193, 509, 535, 702
NlaIV	GGNNCC	1 cut(s)	133
NmuCI	GTSAC	1 cut(s)	55
PagI	TCATGA	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PctI	GAATGC	1 cut(s)	699
PfeI	GAWTC	4 cut(s)	95, 283, 335, 476
PfoI	TCCNGGA	1 cut(s)	376
PkrI	GCNGC	2 cut(s)	149, 432
Psp6I	CCWGG	1 cut(s)	376
PspEI	GGTNACC	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	376
PspN4I	GGNNCC	1 cut(s)	133
PspPI	GGNCC	2 cut(s)	110, 400
PsuI	RGATCY	3 cut(s)	131, 288, 373
RsaI	GTAC	2 cut(s)	242, 448
RsaNI	GTAC	2 cut(s)	241, 447
RseI	CAYNNNNRTG	2 cut(s)	105, 600
SaqAI	TTAA	3 cut(s)	435, 468, 743
SatI	GCNGC	2 cut(s)	148, 431
Sau3AI	GATC	6 cut(s)	131, 288, 373, 567, 664, 730
Sau96I	GGNCC	2 cut(s)	110, 400
ScrFI	CCNGG	3 cut(s)	310, 378, 398
SetI	ASST	6 cut(s)	18, 62, 82, 333, 435, 645
SfaNI	GCATC	1 cut(s)	399
SfcI	CTRYAG	1 cut(s)	613
SinI	GGWCC	2 cut(s)	110, 400
SmiMI	CAYNNNNRTG	2 cut(s)	105, 600
SmlI	CTYRAG	2 cut(s)	326, 434
SmoI	CTYRAG	2 cut(s)	326, 434
Sse9I	AATT	3 cut(s)	172, 457, 740
SsiI	CCGC	4 cut(s)	147, 218, 574, 600
SspMI	CTAG	3 cut(s)	339, 543, 644
StyD4I	CCNGG	3 cut(s)	308, 376, 396
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	2 cut(s)	304, 614
TaqI	TCGA	4 cut(s)	164, 351, 423, 519
TasI	AATT	3 cut(s)	172, 457, 740
TauI	GCSGC	1 cut(s)	150
TfiI	GAWTC	4 cut(s)	95, 283, 335, 476
Tru1I	TTAA	3 cut(s)	435, 468, 743
Tru9I	TTAA	3 cut(s)	435, 468, 743
TseFI	GTSAC	1 cut(s)	55
TseI	GCWGC	1 cut(s)	430
Tsp45I	GTSAC	1 cut(s)	55
TspDTI	ATGAA	3 cut(s)	409, 494, 584
TspGWI	ACGGA	1 cut(s)	260
Vha464I	CTTAAG	1 cut(s)	434
VpaK11BI	GGWCC	2 cut(s)	110, 400
XmiI	GTMKAC	1 cut(s)	672
XspI	CTAG	3 cut(s)	339, 543, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.